hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20090425/iprscan-20090425-05333456/chunk_1/iprscan-20090425-05333456.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: pF1KB6475
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00069.15.ls Protein kinase domain                       310.1    3.8e-90   1
PF00069.15.fs Protein kinase domain                       308.1    1.5e-89   1
PF07714.7.fs Protein tyrosine kinase                      72.2    7.2e-21   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00069.15.fs   1/1      13   300 ..     1   287 []   308.1  1.5e-89
PF07714.7.fs   1/1      13   213 ..     1   210 [.    72.2  7.2e-21
PF00069.15.ls   1/1      13   300 ..     1   287 []   310.1  3.8e-90

Alignments of top-scoring domains:
PF00069.15.fs: domain 1 of 1, from 13 to 300: score 308.1, E = 1.5e-89
                   *->yelleklGsGsfGtVykakhkgtgk.iVAvKiikkrkekskkdktar
                      ye++  +G+G++G+V+ka++ ++g + VA+K++++++ +++++ + +
   pF1KB6475    13    YECVAEIGEGAYGKVFKARDLKNGGrFVALKRVRVQTGEEGMPLSTI 59   

                   rlsEiqilkrLs...HpNIvrlidvfed.....kdhlylVlEycegGLrv
                   r  E+++l++L + +HpN+vrl+dv++ ++++++++l lV+E+++     
   pF1KB6475    60 R--EVAVLRHLEtfeHPNVVRLFDVCTVsrtdrETKLTLVFEHVDQ---- 103  

                   ldLfdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPe
                    dL +yl     + ++  + +++k+++ Q+lrgl++LHs++++HRDLKP+
   pF1KB6475   104 -DLTTYLD-KVPEPGV--PTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQ 149  

                   NILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllg
                   NIL+ + g++    K+aDFGlA+   ++ +  lt++v+T+wY+APEvll 
   pF1KB6475   150 NILVTSSGQI----KLADFGLARI--YsFQMaLTSVVVTLWYRAPEVLL- 192  

                   gngygtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgppl
                   ++ y t+vD WS+G+i++e++ +kp+F+g+   s++dql +i  + g p 
   pF1KB6475   193 QSSYATPVDLWSVGCIFAEMFRRKPLFRGS---SdVDQLGKILDVIGLPG 239  

                   efdspewdsisrse.fr......r.l.pnlseeakdLikkcLnkDPskRl
                   e+d+p +   +r    +++ ++ +++ + ++e +kdL+ kcL+++P+kR+
   pF1KB6475   240 EEDWPRDVALPRQAfHSksaqpiEkFvTDIDELGKDLLLKCLTFNPAKRI 289  

                   taeeilqHPwf<-*
                   +a  +l HP+f   
   pF1KB6475   290 SAYSALSHPYF    300  

PF07714.7.fs: domain 1 of 1, from 13 to 213: score 72.2, E = 7.2e-21
                   *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie
                       +   ++GeGa+G+V+k++     ++++  VA K ++  ++ ee + 
   pF1KB6475    13    YECVAEIGEGAYGKVFKARDL---KNGGRFVALKRVRV-QTGEEGM- 54   

                   redFlrEAsiMkklGd...HpNiVrLlGvctkegePggpg.lyiVtEyme
                     + +rE++++++l  + +HpN+VrL  vct  ++  ++ +l +V+E++ 
   pF1KB6475    55 PLSTIREVAVLRHL-EtfeHPNVVRLFDVCTV-SRTDRETkLTLVFEHVD 102  

                   gGdLldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARN
                     dL ++L k  +++ ++++++ ++++Q  +G+++L+s++ vHRDL   N
   pF1KB6475   103 Q-DLTTYLDKV-PEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQN 150  

                   cLVsenlvVKIsDFGLaRdiynddyY.vrkkgggk.lPvkWmAPEslkyg
                   +LV++++++K +DFGLaR i     Y++++   +  +     APE+l  +
   pF1KB6475   151 ILVTSSGQIKLADFGLAR-I-----YsFQMALTSVvVTLWYRAPEVLLQS 194  

                   kFtskSDVWSFGVlLWEif<-*
                    + +  D WS G+   E+f   
   pF1KB6475   195 SYATPVDLWSVGCIFAEMF    213  

PF00069.15.ls: domain 1 of 1, from 13 to 300: score 310.1, E = 3.8e-90
                   *->yelleklGsGsfGtVykakhkgtgk.iVAvKiikkrkekskkdktar
                      ye++  +G+G++G+V+ka++ ++g + VA+K++++++ +++++ + +
   pF1KB6475    13    YECVAEIGEGAYGKVFKARDLKNGGrFVALKRVRVQTGEEGMPLSTI 59   

                   rlsEiqilkrLs...HpNIvrlidvfed.....kdhlylVlEycegGLrv
                   r  E+++l++L + +HpN+vrl+dv++ ++++++++l lV+E+++     
   pF1KB6475    60 R--EVAVLRHLEtfeHPNVVRLFDVCTVsrtdrETKLTLVFEHVDQ---- 103  

                   ldLfdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPe
                    dL +yl     + ++  + +++k+++ Q+lrgl++LHs++++HRDLKP+
   pF1KB6475   104 -DLTTYLD-KVPEPGV--PTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQ 149  

                   NILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllg
                   NIL+ + g++    K+aDFGlA+   ++ +  lt++v+T+wY+APEvll 
   pF1KB6475   150 NILVTSSGQI----KLADFGLARI--YsFQMaLTSVVVTLWYRAPEVLL- 192  

                   gngygtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgppl
                   ++ y t+vD WS+G+i++e++ +kp+F+g+   s++dql +i  + g p 
   pF1KB6475   193 QSSYATPVDLWSVGCIFAEMFRRKPLFRGS---SdVDQLGKILDVIGLPG 239  

                   efdspewdsisrse.fr......r.l.pnlseeakdLikkcLnkDPskRl
                   e+d+p +   +r    +++ ++ +++ + ++e +kdL+ kcL+++P+kR+
   pF1KB6475   240 EEDWPRDVALPRQAfHSksaqpiEkFvTDIDELGKDLLLKCLTFNPAKRI 289  

                   taeeilqHPwf<-*
                   +a  +l HP+f   
   pF1KB6475   290 SAYSALSHPYF    300  

//