Result of InterProScan for
pF1KB9466
hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /data/Pfam.bin
Sequence file: /tmp/20090424/iprscan-20090424-20545115/chunk_1/iprscan-20090424-20545115.nocrc
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Query sequence: pF1KB9466
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF02155.6.ls Glucocorticoid receptor 1056.2 0 1
PF02155.6.fs Glucocorticoid receptor 1054.2 0 1
PF00105.9.fs Zinc finger, C4 type (two domains) 161.5 7.7e-48 1
PF00104.20.fs Ligand-binding domain of nuclear hormon 159.5 2.1e-47 1
PF00105.9.ls Zinc finger, C4 type (two domains) 163.5 4.9e-46 1
PF00104.20.ls Ligand-binding domain of nuclear hormon 161.4 2.1e-45 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF02155.6.fs 1/1 26 401 .. 1 386 [] 1054.2 0
PF02155.6.ls 1/1 26 401 .. 1 386 [] 1056.2 0
PF00105.9.fs 1/1 419 494 .. 1 77 [] 161.5 7.7e-48
PF00105.9.ls 1/1 419 494 .. 1 77 [] 163.5 4.9e-46
PF00104.20.fs 1/1 568 756 .. 1 198 [] 159.5 2.1e-47
PF00104.20.ls 1/1 568 756 .. 1 198 [] 161.4 2.1e-45
Alignments of top-scoring domains:
PF02155.6.fs: domain 1 of 1, from 26 to 401: score 1054.2, E = 0
*->VidFfkilRGGvslkVSvSstslaaASQSdskQQqHFqKqLrllvDf
V+dF+k lRGG+++kVS+Ss+sla ASQSdskQ rllvDf
pF1KB9466 26 VMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR-------RLLVDF 65
tkGlvsNvqQPDLSKAVSLSMGLYMGEsdTKVMssDlaFPsQeQIslSsG
+kG+vsN+qQPDLSKAVSLSMGLYMGE++TKVM++Dl+FP+Q+QIslSsG
pF1KB9466 66 PKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSG 115
ETDlsLLEESIANLnakslvPdklkeiaessvsAdPKEKeffKtdsDvSa
ETDl LLEESIANLn++++vP+++k++a+ +vsA+P EKef+Kt+sDvS+
pF1KB9466 116 ETDLKLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSS 165
eqrnlkGQtGsNGsssvkLytkDQsTFDlLrDLeiSsdSPGkdtkssPWk
eq+ lkGQtG+NG ++vkLyt DQsTFD+L+DLe+Ss+SPGk+t+ sPW+
pF1KB9466 166 EQQHLKGQTGTNG-GNVKLYTTDQSTFDILQDLEFSSGSPGKETNESPWR 214
ddLlideeaFnLLSPLateddfFlkeevlsEdsKtLiLeDtkqklkDnad
+dLlide++ LLSPLa+edd+Fl+e++++Ed+K+LiL+Dtk+k+kDn+d
pF1KB9466 215 SDLLIDENC--LLSPLAGEDDSFLLEGNSNEDCKPLILPDTKPKIKDNGD 262
lvLlsSadvtlsQVKTEKEDyIELCTPGVvkeEKlstVYCvasFsGanli
lvL+s ++vtl+QVKTEKED+IELCTPGV+k+EKl+tVYC+asF+Gan+i
pF1KB9466 263 LVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTVYCQASFPGANII 312
GNKsSAISvHGVSTSGGQMYHYDlNTAslSQQqDvKPvFNlisPitviaE
GNK+SAISvHGVSTSGGQMYHYD+NTAslSQQqD+KP+FN+i+Pi+v++E
pF1KB9466 313 GNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVGSE 362
nWNRCqGSGdDtlaSlGtlNFPnRsVFSNGYSSPsiRsD<-*
nWNRCqGSGdD+l+SlGtlNFP+R+VFSNGYSSPs+R+D
pF1KB9466 363 NWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPD 401
PF02155.6.ls: domain 1 of 1, from 26 to 401: score 1056.2, E = 0
*->VidFfkilRGGvslkVSvSstslaaASQSdskQQqHFqKqLrllvDf
V+dF+k lRGG+++kVS+Ss+sla ASQSdskQ rllvDf
pF1KB9466 26 VMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR-------RLLVDF 65
tkGlvsNvqQPDLSKAVSLSMGLYMGEsdTKVMssDlaFPsQeQIslSsG
+kG+vsN+qQPDLSKAVSLSMGLYMGE++TKVM++Dl+FP+Q+QIslSsG
pF1KB9466 66 PKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSG 115
ETDlsLLEESIANLnakslvPdklkeiaessvsAdPKEKeffKtdsDvSa
ETDl LLEESIANLn++++vP+++k++a+ +vsA+P EKef+Kt+sDvS+
pF1KB9466 116 ETDLKLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSS 165
eqrnlkGQtGsNGsssvkLytkDQsTFDlLrDLeiSsdSPGkdtkssPWk
eq+ lkGQtG+NG ++vkLyt DQsTFD+L+DLe+Ss+SPGk+t+ sPW+
pF1KB9466 166 EQQHLKGQTGTNG-GNVKLYTTDQSTFDILQDLEFSSGSPGKETNESPWR 214
ddLlideeaFnLLSPLateddfFlkeevlsEdsKtLiLeDtkqklkDnad
+dLlide++ LLSPLa+edd+Fl+e++++Ed+K+LiL+Dtk+k+kDn+d
pF1KB9466 215 SDLLIDENC--LLSPLAGEDDSFLLEGNSNEDCKPLILPDTKPKIKDNGD 262
lvLlsSadvtlsQVKTEKEDyIELCTPGVvkeEKlstVYCvasFsGanli
lvL+s ++vtl+QVKTEKED+IELCTPGV+k+EKl+tVYC+asF+Gan+i
pF1KB9466 263 LVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTVYCQASFPGANII 312
GNKsSAISvHGVSTSGGQMYHYDlNTAslSQQqDvKPvFNlisPitviaE
GNK+SAISvHGVSTSGGQMYHYD+NTAslSQQqD+KP+FN+i+Pi+v++E
pF1KB9466 313 GNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVGSE 362
nWNRCqGSGdDtlaSlGtlNFPnRsVFSNGYSSPsiRsD<-*
nWNRCqGSGdD+l+SlGtlNFP+R+VFSNGYSSPs+R+D
pF1KB9466 363 NWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPD 401
PF00105.9.fs: domain 1 of 1, from 419 to 494: score 161.5, E = 7.7e-48
*->elCkVCGDkASGyHYGvlTCEGCKGFFrRSiqknlviYsCkrnkdCv
+lC+VC+D+ASG+HYGvlTC++CK+FF+R+++++++ Y C++++dC+
pF1KB9466 419 KLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHN-YLCAGRNDCI 464
IdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-*
IdK++R++C++CR++KCL++GM++ea++++
pF1KB9466 465 IDKIRRKNCPACRYRKCLQAGMNLEARKTK 494
PF00105.9.ls: domain 1 of 1, from 419 to 494: score 163.5, E = 4.9e-46
*->elCkVCGDkASGyHYGvlTCEGCKGFFrRSiqknlviYsCkrnkdCv
+lC+VC+D+ASG+HYGvlTC++CK+FF+R+++++++ Y C++++dC+
pF1KB9466 419 KLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHN-YLCAGRNDCI 464
IdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-*
IdK++R++C++CR++KCL++GM++ea++++
pF1KB9466 465 IDKIRRKNCPACRYRKCLQAGMNLEARKTK 494
PF00104.20.fs: domain 1 of 1, from 568 to 756: score 159.5, E = 2.1e-47
*->drelllivewaKklPgFseLsleDQiiLLksswlelllLrlayrsyk
r++ +v+waK +PgF++L+l+DQ++LL++sw+ l+ ++l++rsy
pF1KB9466 568 GRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYR 614
ek.elllfpdggdif.eeqlr.ggl.elvrilqelv.plreLkldeeEya
+ ++ ll++ ++i++e+++ + + +++++ +++ l++L+++ eEy+
pF1KB9466 615 QSsANLLCFAPDLIInEQRMTlPCMyDQCKHMLYVSsELHRLQVSYEEYL 664
lLkAivLfnpdvpglSlkgreiveklqekylsaLleYclltygkepgspq
++k+++L+++ ++++ lk++e+ +++++ y+++L + + ++ +s+q
pF1KB9466 665 CMKTLLLLSSVPKDG-LKSQELFDEIRMTYIKELGKAIVKRE---GNSSQ 710
.dprgpsRFakLLllLpelrslsksklieflfflklfgpvlfpiklppLl
+++ RF +L lL ++++++ ++l++++f + l +i++p +l
pF1KB9466 711 nWQ----RFYQLTKLLDSMHEVV-ENLLNYCFQTFLDKTM--SIEFPEML 753
dvLfkEi<-*
Ei
pF1KB9466 754 ----AEI 756
PF00104.20.ls: domain 1 of 1, from 568 to 756: score 161.4, E = 2.1e-45
*->drelllivewaKklPgFseLsleDQiiLLksswlelllLrlayrsyk
r++ +v+waK +PgF++L+l+DQ++LL++sw+ l+ ++l++rsy
pF1KB9466 568 GRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYR 614
ek.elllfpdggdif.eeqlr.ggl.elvrilqelv.plreLkldeeEya
+ ++ ll++ ++i++e+++ + + +++++ +++ l++L+++ eEy+
pF1KB9466 615 QSsANLLCFAPDLIInEQRMTlPCMyDQCKHMLYVSsELHRLQVSYEEYL 664
lLkAivLfnpdvpglSlkgreiveklqekylsaLleYclltygkepgspq
++k+++L+++ ++++ lk++e+ +++++ y+++L + + ++ +s+q
pF1KB9466 665 CMKTLLLLSSVPKDG-LKSQELFDEIRMTYIKELGKAIVKRE---GNSSQ 710
.dprgpsRFakLLllLpelrslsksklieflfflklfgpvlfpiklppLl
+++ RF +L lL ++++++ ++l++++f + l +i++p +l
pF1KB9466 711 nWQ----RFYQLTKLLDSMHEVV-ENLLNYCFQTFLDKTM--SIEFPEML 753
dvLfkEi<-*
Ei
pF1KB9466 754 ----AEI 756
//