hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080627/iprscan-20080627-01225248/chunk_1/iprscan-20080627-01225248.nocrc
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Query sequence: pF1KB7689
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00605.8.ls Interferon regulatory factor transcription f   311.6    1.3e-90   1
PF00605.8.fs Interferon regulatory factor transcription f   309.7    4.8e-90   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00605.8.fs   1/1       5   114 ..     1   111 []   309.7  4.8e-90
PF00605.8.ls   1/1       5   114 ..     1   111 []   311.6  1.3e-90

Alignments of top-scoring domains:
PF00605.8.fs: domain 1 of 1, from 5 to 114: score 309.7, E = 4.8e-90
                   *->RmRlRpWLveQInSnqiPGLiWenkeksiFrIPWkHAgKqdwdeekD
                      RmR+RpWL+eQInSn+iPGL+W+nkek+iF+IPW+HA++++wd+ekD
   pF1KB7689     5    RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKD 51   

                   AalFkaWAIfkGKyKeGvDkaPdPatWKtrlRCAlNksPDfeEVkDrSrl
                   A+lF++WAI++GK+++GvDk+ dP+tWK+++RCA+N++PD+eEVkD+S++
   pF1KB7689    52 APLFRNWAIHTGKHQPGVDKP-DPKTWKANFRCAMNSLPDIEEVKDKSIK 100  

                   dvsepykVYrlLPp<-*
                   +++++++VYr+LP+   
   pF1KB7689   101 KGNNAFRVYRMLPL    114  

PF00605.8.ls: domain 1 of 1, from 5 to 114: score 311.6, E = 1.3e-90
                   *->RmRlRpWLveQInSnqiPGLiWenkeksiFrIPWkHAgKqdwdeekD
                      RmR+RpWL+eQInSn+iPGL+W+nkek+iF+IPW+HA++++wd+ekD
   pF1KB7689     5    RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKD 51   

                   AalFkaWAIfkGKyKeGvDkaPdPatWKtrlRCAlNksPDfeEVkDrSrl
                   A+lF++WAI++GK+++GvDk+ dP+tWK+++RCA+N++PD+eEVkD+S++
   pF1KB7689    52 APLFRNWAIHTGKHQPGVDKP-DPKTWKANFRCAMNSLPDIEEVKDKSIK 100  

                   dvsepykVYrlLPp<-*
                   +++++++VYr+LP+   
   pF1KB7689   101 KGNNAFRVYRMLPL    114  

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