hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080306/iprscan-20080306-12303318/chunk_1/iprscan-20080306-12303318.nocrc
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Query sequence: pF1KB8993
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00447.8.fs HSF-type DNA-binding                        28.3    4.5e-08   3
PF00447.8.ls HSF-type DNA-binding                       -29.7    1.5e-07   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00447.8.fs   1/3      80   117 ..     1    44 [.     1.0      5.2
PF00447.8.ls   1/1      80   285 ..     1   207 []   -29.7  1.5e-07
PF00447.8.fs   2/3     133   147 ..    55    69 ..    14.3  0.00061
PF00447.8.fs   3/3     177   195 ..    89   107 ..    13.1   0.0014

Alignments of top-scoring domains:
PF00447.8.fs: domain 1 of 3, from 80 to 117: score 1.0, E = 5.2
                   *->PaNEFLsKLwrlVeDpstddl..IcWStnGnSFvVlDeerFAkelL<
                          F +KLw +Ve   +d++++I+W +nG   +V++ee F ke+L 
   pF1KB8993    80    ----FPRKLWKIVE---SDQFksISWDENGTC-IVINEELFKKEIL  117  

                   -*
                     
   pF1KB8993     -    -    

PF00447.8.ls: domain 1 of 1, from 80 to 285: score -29.7, E = 1.5e-07
                   *->PaNEFLsKLwrlVeDpstddl..IcWStnGnSFvVlDeerFAkelL.
                          F +KLw +Ve   +d++++I+W +nG   +V++ee F ke+L+
   pF1KB8993    80    ----FPRKLWKIVE---SDQFksISWDENGTC-IVINEELFKKEILe 118  

                   ...P.kYFKHNNFASFVRQLNmYGFrKVvhiesG.....rkvdpdrdelw
                   ++ P + F    + SFVRQLN YGF K++   + +      ++ ++++++
   pF1KB8993   119 tkaPyRIFQTDAIKSFVRQLNLYGFSKIQQNFQRsaflaTFLSEEKESSV 168  

                   .....EFqhPnFkrGqehLLenIkRKksasrskpeeqknqqedlhkilse
                    ++ +   +PnFkrG++ LL  +kR++ + +        ++  ++++ +e
   pF1KB8993   169 lsklkFYYNPNFKRGYPQLLVRVKRRIGVKN-------ASP--ISTLFNE 209  

                   ..lqvmrgsQsnlesrlsalkeE......NeaLWrEvavLRqkhvKLRqQ
                   +  ++    ++n+e+  sal  E ++++   a++  ++ L ++ +     
   pF1KB8993   210 dfNKKHFRAGANMENHNSALAAEaseeslFSASKNLNMPLTRESS----V 255  

                   QqvidKllqflvslvqpnklksisgvkrksliHEL<-*
                    q+i +    + s + p +  +  +v +  +   +   
   pF1KB8993   256 RQIIANSSVPIRSGFPPPS--PSTSVGPSEQ---I    285  

PF00447.8.fs: domain 2 of 3, from 133 to 147: score 14.3, E = 0.00061
                   *->SFVRQLNmYGFrKVv<-*
                      SFVRQLN YGF K++   
   pF1KB8993   133    SFVRQLNLYGFSKIQ    147  

PF00447.8.fs: domain 3 of 3, from 177 to 195: score 13.1, E = 0.0014
                   *->hPnFkrGqehLLenIkRKk<-*
                      +PnFkrG++ LL  +kR++   
   pF1KB8993   177    NPNFKRGYPQLLVRVKRRI    195  

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