hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080306/iprscan-20080306-04563223/chunk_1/iprscan-20080306-04563223.nocrc
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Query sequence: pF1KB8823
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    272.5    1.4e-90   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    274.4    2.1e-79   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1      70   320 ..     1   272 []   272.5  1.4e-90
PF00001.12.ls   1/1      70   320 ..     1   272 []   274.4  2.1e-79

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 70 to 320: score 272.5, E = 1.4e-90
                   *->GNlLVilvilrtkklr.tptnifilNLAvADLLflltlppwalyylv
                      +NlLVi+v +r  + r   +n++ilN+A+ADL ++l+lp+w+l   +
   pF1KB8823    70    ENLLVICVNWR-GSGRaGLMNLYILNMAIADLGIVLSLPVWMLEVTL 115  

                   ggedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrr
                     ++W +Gs+ C++++++++vnmy+Si++L+++S+DRY++ + +  ++ r
   pF1KB8823   116 D-YTWLWGSFSCRFTHYFYFVNMYSSIFFLVCLSVDRYVTLTSASPSWQR 164  

                   rtsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidf
                      +r+ +++++++Wvl++++ lP +++ ++   +e+       +Cl++ 
   pF1KB8823   165 YQ-HRVRRAMCAGIWVLSAIIPLPEVVHIQLVEGPEP-------MCLFMA 206  

                   pevstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkga
                   p+++   ++tw +++al+ t++gF+lP+ +i+v++ +++++lr+  +   
   pF1KB8823   207 PFET---YSTWALAVALSTTILGFLLPFPLITVFNVLTACRLRQPGQ--- 250  

                   skkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCe
                         k r+ + +l+++v vFv CWlPy+++lll tl++++i  s++C 
   pF1KB8823   251 -----PKSRRHCLLLCAYVAVFVMCWLPYHVTLLLLTLHgTHI--SLHCH 293  

                   lervlptallvtlwLayvNsclNPiIY<-*
                   l ++l ++++v+ +++++++++NPi+Y   
   pF1KB8823   294 LVHLLYFFYDVIDCFSMLHCVINPILY    320  

PF00001.12.ls: domain 1 of 1, from 70 to 320: score 274.4, E = 2.1e-79
                   *->GNlLVilvilrtkklr.tptnifilNLAvADLLflltlppwalyylv
                      +NlLVi+v +r  + r   +n++ilN+A+ADL ++l+lp+w+l   +
   pF1KB8823    70    ENLLVICVNWR-GSGRaGLMNLYILNMAIADLGIVLSLPVWMLEVTL 115  

                   ggedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrr
                     ++W +Gs+ C++++++++vnmy+Si++L+++S+DRY++ + +  ++ r
   pF1KB8823   116 D-YTWLWGSFSCRFTHYFYFVNMYSSIFFLVCLSVDRYVTLTSASPSWQR 164  

                   rtsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidf
                      +r+ +++++++Wvl++++ lP +++ ++   +e+       +Cl++ 
   pF1KB8823   165 YQ-HRVRRAMCAGIWVLSAIIPLPEVVHIQLVEGPEP-------MCLFMA 206  

                   pevstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkga
                   p+++   ++tw +++al+ t++gF+lP+ +i+v++ +++++lr+  +   
   pF1KB8823   207 PFET---YSTWALAVALSTTILGFLLPFPLITVFNVLTACRLRQPGQ--- 250  

                   skkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCe
                         k r+ + +l+++v vFv CWlPy+++lll tl++++i  s++C 
   pF1KB8823   251 -----PKSRRHCLLLCAYVAVFVMCWLPYHVTLLLLTLHgTHI--SLHCH 293  

                   lervlptallvtlwLayvNsclNPiIY<-*
                   l ++l ++++v+ +++++++++NPi+Y   
   pF1KB8823   294 LVHLLYFFYDVIDCFSMLHCVINPILY    320  

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