hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080307/iprscan-20080307-00392239/chunk_1/iprscan-20080307-00392239.nocrc
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Query sequence: pF1KB7421
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    120.9    2.2e-40   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    122.8      9e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1      91   340 ..     1   272 []   120.9  2.2e-40
PF00001.12.ls   1/1      91   340 ..     1   272 []   122.8    9e-34

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 91 to 340: score 120.9, E = 2.2e-40
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                       N++ i++i    +l+tp+++++ +L++ D+++  t +p +l++++ 
   pF1KB7421    91    ANGVMIFLIQTDLRLHTPMYFLLSHLSLIDMMYISTIVPKMLVNYLL 137  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                     + +++ ++C  +++l+++ + a  +lL ++++DRY+AI++Plry++++
   pF1KB7421   138 -DQRTISFVGCTAQHFLYLTLVGAEFFLLGLMAYDRYVAICNPLRYPVLM 186  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   + +r+++ +i++ W+ + l +++  +  ++ +++++++ +n+++C    +
   pF1KB7421   187 S-RRVCWMIIAGSWFGGSLDGFLL-TPITMSFPFCNSREINHFFCEAPAV 234  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                      ++ + + + +++ + +++  ++P++v l  Y rIl t++ + +    
   pF1KB7421   235 LKLACADTALYETVMYVCCVLMLLIPFSVVLASYARILTTVQCMSS---- 280  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
                        + rk a+ ++  + ++v +++  +   ++ ++             
   pF1KB7421   281 ----VEGRKKAFATCSSHMTVVSLFYGAAMYTYMLPHSyHK--------- 317  

                   ervlptallvtlwLayvNsclNPiIY<-*
                      +   + ++++++ + ++lNP+IY   
   pF1KB7421   318 ---PAQDKVLSVFYTILTPMLNPLIY    340  

PF00001.12.ls: domain 1 of 1, from 91 to 340: score 122.8, E = 9e-34
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                       N++ i++i    +l+tp+++++ +L++ D+++  t +p +l++++ 
   pF1KB7421    91    ANGVMIFLIQTDLRLHTPMYFLLSHLSLIDMMYISTIVPKMLVNYLL 137  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                     + +++ ++C  +++l+++ + a  +lL ++++DRY+AI++Plry++++
   pF1KB7421   138 -DQRTISFVGCTAQHFLYLTLVGAEFFLLGLMAYDRYVAICNPLRYPVLM 186  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   + +r+++ +i++ W+ + l +++  +  ++ +++++++ +n+++C    +
   pF1KB7421   187 S-RRVCWMIIAGSWFGGSLDGFLL-TPITMSFPFCNSREINHFFCEAPAV 234  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                      ++ + + + +++ + +++  ++P++v l  Y rIl t++ + +    
   pF1KB7421   235 LKLACADTALYETVMYVCCVLMLLIPFSVVLASYARILTTVQCMSS---- 280  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
                        + rk a+ ++  + ++v +++  +   ++ ++             
   pF1KB7421   281 ----VEGRKKAFATCSSHMTVVSLFYGAAMYTYMLPHSyHK--------- 317  

                   ervlptallvtlwLayvNsclNPiIY<-*
                      +   + ++++++ + ++lNP+IY   
   pF1KB7421   318 ---PAQDKVLSVFYTILTPMLNPLIY    340  

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