hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080305/iprscan-20080305-02280689/chunk_1/iprscan-20080305-02280689.nocrc
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Query sequence: pF1KB4380
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    331.7   3.5e-110   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    333.6    3.1e-97   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1      75   323 ..     1   272 []   331.7 3.5e-110
PF00001.12.ls   1/1      75   323 ..     1   272 []   333.6  3.1e-97

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 75 to 323: score 331.7, E = 3.5e-110
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GN++Vi+vilr+ k++t+tni+ilNLA+AD L++l++p+ ++++l+ 
   pF1KB4380    75    GNSMVIYVILRYAKMKTATNIYILNLAIADELLMLSVPFLVTSTLLR 121  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                     +WpfG +lC+lv ++d vnm++Si++Lt++S+DRY+A+vhP+++ r+r
   pF1KB4380   122 --HWPFGALLCRLVLSVDAVNMFTSIYCLTVLSVDRYVAVVHPIKAARYR 169  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   + p +Akvv l+vWvl+ll+ lP+++fs +  +++g       +C + +p
   pF1KB4380   170 R-PTVAKVVNLGVWVLSLLVILPIVVFSRTAANSDG-----TVACNMLMP 213  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                   e++    + wlv+++l+ +l+gF+lP+  i+ cY +I+ ++r +a k  +
   pF1KB4380   214 EPA----QRWLVGFVLYTFLMGFLLPVGAICLCYVLIIAKMRMVALKAGW 259  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
                   ++r+++erk++ ++ +vv vFv+CW+P+ +v+l++++++++         
   pF1KB4380   260 QQRKRSERKITLMVMMVVMVFVICWMPFYVVQLVNVFAeQD--------- 300  

                   ervlptallvtlwLayvNsclNPiIY<-*
                        t+ ++++ L+y+Nsc NPi+Y   
   pF1KB4380   301 ---DATVSQLSVILGYANSCANPILY    323  

PF00001.12.ls: domain 1 of 1, from 75 to 323: score 333.6, E = 3.1e-97
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GN++Vi+vilr+ k++t+tni+ilNLA+AD L++l++p+ ++++l+ 
   pF1KB4380    75    GNSMVIYVILRYAKMKTATNIYILNLAIADELLMLSVPFLVTSTLLR 121  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                     +WpfG +lC+lv ++d vnm++Si++Lt++S+DRY+A+vhP+++ r+r
   pF1KB4380   122 --HWPFGALLCRLVLSVDAVNMFTSIYCLTVLSVDRYVAVVHPIKAARYR 169  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   + p +Akvv l+vWvl+ll+ lP+++fs +  +++g       +C + +p
   pF1KB4380   170 R-PTVAKVVNLGVWVLSLLVILPIVVFSRTAANSDG-----TVACNMLMP 213  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                   e++    + wlv+++l+ +l+gF+lP+  i+ cY +I+ ++r +a k  +
   pF1KB4380   214 EPA----QRWLVGFVLYTFLMGFLLPVGAICLCYVLIIAKMRMVALKAGW 259  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
                   ++r+++erk++ ++ +vv vFv+CW+P+ +v+l++++++++         
   pF1KB4380   260 QQRKRSERKITLMVMMVVMVFVICWMPFYVVQLVNVFAeQD--------- 300  

                   ervlptallvtlwLayvNsclNPiIY<-*
                        t+ ++++ L+y+Nsc NPi+Y   
   pF1KB4380   301 ---DATVSQLSVILGYANSCANPILY    323  

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