hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080306/iprscan-20080306-04172260/chunk_1/iprscan-20080306-04172260.nocrc
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Query sequence: pF1KSDA0969
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00169.19.fs PH domain                                       91.9    1.7e-27   1
PF00169.19.ls PH domain                                       93.9    4.5e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.fs   1/1      60   158 ..     1    92 []    91.9  1.7e-27
PF00169.19.ls   1/1      60   158 ..     1    92 []    93.9  4.5e-25

Alignments of top-scoring domains:
PF00169.19.fs: domain 1 of 1, from 60 to 158: score 91.9, E = 1.7e-27
                   *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL
                      v+k GwL+k+ ++g k+w kR+fvL d++L+yykd+k+++  gsipL
  pF1KSDA096    60    VTKAGWLFKQAssGVKQWNKRWFVLVDRCLFYYKDEKeESILGSIPL 106  

                   sgiqvtkvpdn...krkncFeirt.dretlllqaeseeerkeWvkaiqsa
                    + +v  v ++++  rk++F+  + + +t++++aes+ee + W++a+ +a
  pF1KSDA096   107 LSFRVAAVQPSdniSRKHTFKAEHaGVRTYFFSAESPEEQEAWIQAMGEA 156  

                   ir<-*
                   +r   
  pF1KSDA096   157 AR    158  

PF00169.19.ls: domain 1 of 1, from 60 to 158: score 93.9, E = 4.5e-25
                   *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL
                      v+k GwL+k+ ++g k+w kR+fvL d++L+yykd+k+++  gsipL
  pF1KSDA096    60    VTKAGWLFKQAssGVKQWNKRWFVLVDRCLFYYKDEKeESILGSIPL 106  

                   sgiqvtkvpdn...krkncFeirt.dretlllqaeseeerkeWvkaiqsa
                    + +v  v ++++  rk++F+  + + +t++++aes+ee + W++a+ +a
  pF1KSDA096   107 LSFRVAAVQPSdniSRKHTFKAEHaGVRTYFFSAESPEEQEAWIQAMGEA 156  

                   ir<-*
                   +r   
  pF1KSDA096   157 AR    158  

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