hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080305/iprscan-20080305-19171737/chunk_1/iprscan-20080305-19171737.nocrc
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Query sequence: pF1KSDA0677
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02373.13.fs JmjC domain                                    218.8    3.3e-64   1
PF02373.13.ls JmjC domain                                    220.8    2.9e-63   1
PF02375.7.ls jmjN domain                                    100.8    3.7e-27   1
PF02375.7.fs jmjN domain                                     99.0    1.3e-26   1
PF00628.19.fs PHD-finger                                      25.7    7.6e-08   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02375.7.fs   1/1      15    60 ..     1    53 []    99.0  1.3e-26
PF02375.7.ls   1/1      15    60 ..     1    53 []   100.8  3.7e-27
PF02373.13.fs   1/1     175   291 ..     1   126 []   218.8  3.3e-64
PF02373.13.ls   1/1     175   291 ..     1   126 []   220.8  2.9e-63
PF00628.19.fs   1/2     735   769 ..    16    51 .]    21.0  2.4e-06

Alignments of top-scoring domains:
PF02375.7.fs: domain 1 of 1, from 15 to 60: score 99.0, E = 1.3e-26
                   *->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk
                      ++F+PtmeEF+++ +YIa+I +++gA+++G++KVvPPkeW      k
  pF1KSDA067    15    MTFYPTMEEFRNFSRYIAYI-ESQGAHRAGLAKVVPPKEW------K 54   

                   Ppcald<-*
                   P++++d   
  pF1KSDA067    55 PRASYD    60   

PF02375.7.ls: domain 1 of 1, from 15 to 60: score 100.8, E = 3.7e-27
                   *->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk
                      ++F+PtmeEF+++ +YIa+I +++gA+++G++KVvPPkeW      k
  pF1KSDA067    15    MTFYPTMEEFRNFSRYIAYI-ESQGAHRAGLAKVVPPKEW------K 54   

                   Ppcald<-*
                   P++++d   
  pF1KSDA067    55 PRASYD    60   

PF02373.13.fs: domain 1 of 1, from 175 to 291: score 218.8, E = 3.3e-64
                   *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek
                      +lY+Gm++++++wH+Ed++lySinylhfg+pk WY++P+e+++++e 
  pF1KSDA067   175    YLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLE- 220  

                   lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ
                     ++++ +  +P++ ++++ ++ lrh++tlisP +  L++ gip+ +++Q
  pF1KSDA067   221 --RLAKGF--FPGS-AQSCEAF-LRHKMTLISPLM--LKKYGIPFDKVTQ 262  

                   kpGEfVitfPgayHavfNlGfniaeavNF<-*
                   ++GEf+itfP++yHa+fN+Gfn+ae++NF   
  pF1KSDA067   263 EAGEFMITFPYGYHAGFNHGFNCAESTNF    291  

PF02373.13.ls: domain 1 of 1, from 175 to 291: score 220.8, E = 2.9e-63
                   *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek
                      +lY+Gm++++++wH+Ed++lySinylhfg+pk WY++P+e+++++e 
  pF1KSDA067   175    YLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLE- 220  

                   lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ
                     ++++ +  +P++ ++++ ++ lrh++tlisP +  L++ gip+ +++Q
  pF1KSDA067   221 --RLAKGF--FPGS-AQSCEAF-LRHKMTLISPLM--LKKYGIPFDKVTQ 262  

                   kpGEfVitfPgayHavfNlGfniaeavNF<-*
                   ++GEf+itfP++yHa+fN+Gfn+ae++NF   
  pF1KSDA067   263 EAGEFMITFPYGYHAGFNHGFNCAESTNF    291  

PF00628.19.fs: domain 1 of 2, from 735 to 769: score 21.0, E = 2.4e-06
                   *->llqCDgCdrwfHlaClgpplepeeipeWyCpeCkpk<-*
                      l+ C +C + +H++C+g p+ ++    W C +C +    
  pF1KSDA067   735    LVSCKKCSVRVHASCYGVPPAKASED-WMCSRCSAN    769  

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