hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080305/iprscan-20080305-13172205/chunk_1/iprscan-20080305-13172205.nocrc
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Query sequence: pF1KSDA0414
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00651.21.ls BTB/POZ domain                                 122.2    1.4e-33   1
PF00651.21.fs BTB/POZ domain                                 120.4    4.2e-33   1
PF00096.16.ls Zinc finger, C2H2 type                          69.7    8.7e-18   3
PF00096.16.fs Zinc finger, C2H2 type                          63.8    5.1e-16   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00651.21.fs   1/1      23   127 ..     1   135 []   120.4  4.2e-33
PF00651.21.ls   1/1      23   127 ..     1   135 []   122.2  1.4e-33
PF00096.16.ls   1/3     373   394 ..     1    24 []    21.7   0.0025
PF00096.16.fs   2/3     400   422 ..     1    24 []    25.2  4.9e-05
PF00096.16.ls   2/3     400   422 ..     1    24 []    27.2  5.4e-05
PF00096.16.ls   3/3     428   450 ..     1    24 []    20.8   0.0045

Alignments of top-scoring domains:
PF00651.21.fs: domain 1 of 1, from 23 to 127: score 120.4, E = 4.2e-33
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      ln++r+qg+lcDV +vv+        g+ f+AHKavLaa+SpYF + 
  pF1KSDA041    23    LNQQRQQGQLCDVSIVVQ--------GHIFRAHKAVLAASSPYFCDQ 61   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                    + +       + +    ++  + ++p +fe++L   Ytg+l ++     
  pF1KSDA041    62 VLLK-------NSRR---IVLPDVMNPRVFENILLSSYTGRLVMP----- 96   

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                            ++++L aA ++lq++++vd+C+e l  +    
  pF1KSDA041    97 ------APEIVSYLTAA-SFLQMWHVVDKCTEVLEGNP    127  

PF00651.21.ls: domain 1 of 1, from 23 to 127: score 122.2, E = 1.4e-33
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      ln++r+qg+lcDV +vv+        g+ f+AHKavLaa+SpYF + 
  pF1KSDA041    23    LNQQRQQGQLCDVSIVVQ--------GHIFRAHKAVLAASSPYFCDQ 61   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                    + +       + +    ++  + ++p +fe++L   Ytg+l ++     
  pF1KSDA041    62 VLLK-------NSRR---IVLPDVMNPRVFENILLSSYTGRLVMP----- 96   

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                            ++++L aA ++lq++++vd+C+e l  +    
  pF1KSDA041    97 ------APEIVSYLTAA-SFLQMWHVVDKCTEVLEGNP    127  

PF00096.16.ls: domain 1 of 3, from 373 to 394: score 21.7, E = 0.0025
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+  CgksF++ks+  rH+ +H   
  pF1KSDA041   373    YPCQ--CGKSFTHKSQRDRHMSMH    394  

PF00096.16.fs: domain 2 of 3, from 400 to 422: score 25.2, E = 4.9e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C  +Cgk+F+ k++L  H+++H   
  pF1KSDA041   400    YGCG-VCGKKFKMKHHLVGHMKIH    422  

PF00096.16.ls: domain 2 of 3, from 400 to 422: score 27.2, E = 5.4e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C  +Cgk+F+ k++L  H+++H   
  pF1KSDA041   400    YGCG-VCGKKFKMKHHLVGHMKIH    422  

PF00096.16.ls: domain 3 of 3, from 428 to 450: score 20.8, E = 0.0045
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C k+F  +++++rH  ++   
  pF1KSDA041   428    YECN-ICAKRFMWRDSFHRHVTSC    450  

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