hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080305/iprscan-20080305-03211992/chunk_1/iprscan-20080305-03211992.nocrc
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Query sequence: pF1KSDA0111
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00270.19.ls DEAD/DEAH box helicase                       205.6    1.1e-58   1
PF00270.19.fs DEAD/DEAH box helicase                       203.7    3.8e-58   1
PF00271.21.fs Helicase conserved C-terminal domain         130.2    2.1e-37   1
PF00271.21.ls Helicase conserved C-terminal domain         132.2    1.4e-36   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00270.19.fs   1/1      62   228 ..     1   213 []   203.7  3.8e-58
PF00270.19.ls   1/1      62   228 ..     1   213 []   205.6  1.1e-58
PF00271.21.fs   1/1     296   372 ..     1    76 []   130.2  2.1e-37
PF00271.21.ls   1/1     296   372 ..     1    76 []   132.2  1.4e-36

Alignments of top-scoring domains:
PF00270.19.fs: domain 1 of 1, from 62 to 228: score 203.7, E = 3.8e-58
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx
                   *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq
                      ++iQ++ai++i++GrDv++q++ G+GKT+ f + +lq l+ +     
  pF1KSDA011    62    SAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIqV---- 104  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv
                            + +qal+laPTreLa Qi + l +lg +        +++ +
  pF1KSDA011   105 ---------RETQALILAPTRELAVQIQKGLLALGDY--------MNVQC 137  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   allyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkreg
                   ++++GG++++e+++kl      g     +++ gTPgr++d++    +r +
  pF1KSDA011   138 HACIGGTNVGEDIRKL--D--YG----QHVVAGTPGRVFDMI----RR-R 174  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   asldlknlkllVlDEAhrlldmkGfgedleeilrrlprpklrrlsqdlpn
                   + l+ + +k+lVlDEA+++l++ Gf+e++++++r lp p           
  pF1KSDA011   175 S-LRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLP-PA---------- 211  

                RF xxxxxxxxxxxxxxxxx   
                   rqtllfSATlprnvedl<-*
                    q++l SATlp ++ +    
  pF1KSDA011   212 TQVVLISATLPHEILEM    228  

PF00270.19.ls: domain 1 of 1, from 62 to 228: score 205.6, E = 1.1e-58
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx
                   *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq
                      ++iQ++ai++i++GrDv++q++ G+GKT+ f + +lq l+ +     
  pF1KSDA011    62    SAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIqV---- 104  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv
                            + +qal+laPTreLa Qi + l +lg +        +++ +
  pF1KSDA011   105 ---------RETQALILAPTRELAVQIQKGLLALGDY--------MNVQC 137  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   allyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkreg
                   ++++GG++++e+++kl      g     +++ gTPgr++d++    +r +
  pF1KSDA011   138 HACIGGTNVGEDIRKL--D--YG----QHVVAGTPGRVFDMI----RR-R 174  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   asldlknlkllVlDEAhrlldmkGfgedleeilrrlprpklrrlsqdlpn
                   + l+ + +k+lVlDEA+++l++ Gf+e++++++r lp p           
  pF1KSDA011   175 S-LRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLP-PA---------- 211  

                RF xxxxxxxxxxxxxxxxx   
                   rqtllfSATlprnvedl<-*
                    q++l SATlp ++ +    
  pF1KSDA011   212 TQVVLISATLPHEILEM    228  

PF00271.21.fs: domain 1 of 1, from 296 to 372: score 130.2, E = 2.1e-37
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                      +++e ++ v ++hG+++q+eRe i+++Fr+g s+vL++Tdv +rG+D
  pF1KSDA011   296    KMrEANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 342  

                   ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   +p+v+l+Inydlp n+e yi+RiGR GR G   
  pF1KSDA011   343 VPQVSLIINYDLPNNRELYIHRIGRSGRYG    372  

PF00271.21.ls: domain 1 of 1, from 296 to 372: score 132.2, E = 1.4e-36
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                      +++e ++ v ++hG+++q+eRe i+++Fr+g s+vL++Tdv +rG+D
  pF1KSDA011   296    KMrEANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 342  

                   ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   +p+v+l+Inydlp n+e yi+RiGR GR G   
  pF1KSDA011   343 VPQVSLIINYDLPNNRELYIHRIGRSGRYG    372  

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