hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080304/iprscan-20080304-23351255/chunk_1/iprscan-20080304-23351255.nocrc
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Query sequence: pF1KSDA0014
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                             33.1    8.8e-07   5
PF00560.23.fs Leucine Rich Repeat                             23.8    1.9e-05   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.fs   3/5     337   359 ..     1    24 []    14.8   0.0052
PF00560.23.ls   3/5     337   359 ..     1    24 []    16.7    0.077

Alignments of top-scoring domains:
PF00560.23.fs: domain 3 of 5, from 337 to 359: score 14.8, E = 0.0052
                   *->nLeeLdLsgCNpsltgs.lpssl.nl<-*
                      +L++LdLsg N  l+gs l++ +++l   
  pF1KSDA001   337    HLKKLDLSG-N-DLSGSqLAP-FqGL    359  

PF00560.23.ls: domain 3 of 5, from 337 to 359: score 16.7, E = 0.077
                   *->nLeeLdLsgCNpsltgs.lpssl.nl<-*
                      +L++LdLsg N  l+gs l++ +++l   
  pF1KSDA001   337    HLKKLDLSG-N-DLSGSqLAP-FqGL    359  

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