Result of InterProScan for
pF1KA0234
hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /data/Pfam.bin
Sequence file: /tmp/20080304/iprscan-20080304-22003268/chunk_1/iprscan-20080304-22003268.nocrc
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Query sequence: pF1KA0234
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF08429.1.ls PLU-1-like protein 472.5 4.7e-139 1
PF08429.1.fs PLU-1-like protein 472.5 4.9e-139 2
PF02373.13.fs JmjC domain 220.7 9.2e-65 1
PF02373.13.ls JmjC domain 222.7 7.8e-64 1
PF00628.19.fs PHD-finger 108.7 1.9e-34 2
PF00628.19.ls PHD-finger 112.5 1.1e-30 2
PF02928.6.ls C5HC2 zinc finger 107.5 3.7e-29 1
PF02928.6.fs C5HC2 zinc finger 105.6 1.4e-28 1
PF02375.7.ls jmjN domain 96.0 1e-25 1
PF02375.7.fs jmjN domain 94.2 3.6e-25 1
PF01388.11.fs ARID/BRIGHT DNA binding domain 57.3 1.7e-15 1
PF01388.11.ls ARID/BRIGHT DNA binding domain 16.6 3.3e-06 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF02375.7.ls 1/1 15 59 .. 1 53 [] 96.0 1e-25
PF02375.7.fs 1/1 15 59 .. 1 53 [] 94.2 3.6e-25
PF01388.11.fs 1/1 76 117 .. 1 43 [. 57.3 1.7e-15
PF01388.11.ls 1/1 76 172 .. 1 116 [] 16.6 3.3e-06
PF00628.19.ls 1/2 259 307 .. 1 51 [] 68.1 2.6e-17
PF00628.19.fs 1/2 259 307 .. 1 51 [] 66.2 7.8e-21
PF02373.13.ls 1/1 434 550 .. 1 126 [] 222.7 7.8e-64
PF02373.13.fs 1/1 434 550 .. 1 126 [] 220.7 9.2e-65
PF02928.6.fs 1/1 640 693 .. 1 59 [] 105.6 1.4e-28
PF02928.6.ls 1/1 640 693 .. 1 59 [] 107.5 3.7e-29
PF08429.1.ls 1/1 704 1030 .. 1 394 [] 472.5 4.7e-139
PF08429.1.fs 1/2 704 1030 .. 1 394 [] 470.8 1.6e-138
PF00628.19.fs 2/2 1117 1180 .. 1 51 [] 42.5 3.2e-13
PF00628.19.ls 2/2 1117 1180 .. 1 51 [] 44.4 3.5e-10
Alignments of top-scoring domains:
PF02375.7.ls: domain 1 of 1, from 15 to 59: score 96.0, E = 1e-25
*->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk
PvF+P++ EF Dpl YIak irp Aek+Gi+K++PP++W +
pF1KA0234 15 PVFEPSWAEFQDPLGYIAK--IRPIAEKSGICKIRPPADW------Q 53
Ppcald<-*
Pp+a++
pF1KA0234 54 PPFAVE 59
PF02375.7.fs: domain 1 of 1, from 15 to 59: score 94.2, E = 3.6e-25
*->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk
PvF+P++ EF Dpl YIak irp Aek+Gi+K++PP++W +
pF1KA0234 15 PVFEPSWAEFQDPLGYIAK--IRPIAEKSGICKIRPPADW------Q 53
Ppcald<-*
Pp+a++
pF1KA0234 54 PPFAVE 59
PF01388.11.fs: domain 1 of 1, from 76 to 117: score 57.3, E = 1.7e-15
*->eaqtrerkeFldrLikFmekrgtpltkiPvvgkkeLDLYrLyr<-*
eaqtr+++++ld+++kF+e +g+ +kiP+v++k+LDLY+L++
pF1KA0234 76 EAQTRVKLNYLDQIAKFWEIQGS-SLKIPNVERKILDLYSLSK 117
PF01388.11.ls: domain 1 of 1, from 76 to 172: score 16.6, E = 3.3e-06
*->eaqtrerkeFldrLikFmekrgtpltkiPvvgkkeLDLYrLyrlVke
eaqtr+++++ld+++kF+e +g+ +kiP+v++k+LDLY+L++ +
pF1KA0234 76 EAQTRVKLNYLDQIAKFWEIQGS-SLKIPNVERKILDLYSLSKQCNT 121
kGGfqqVtkdkkWseiareLgipdsisRGVPSsagslLrshYmryLypfE
++V +++ ++ ip + s PS ++s +
pF1KA0234 122 HPFDNEVKDKE-----YKPHSIPLRQS-VQPSKFSS------------YS 153
cyeeeenlrdeteaaddme<-*
++ + +++ e + +d+ +
pF1KA0234 154 RRAKRLQPDPEPTEEDIEK 172
PF00628.19.ls: domain 1 of 2, from 259 to 307: score 68.1, E = 2.6e-17
*->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC
+C+vC++ d++++ll+CDgCd+ +H++Cl ppl+ eip + W C
pF1KA0234 259 ICQVCSR--GDEDDKLLFCDGCDDNYHIFCLLPPLP--EIPRgiWRC 301
peCkpk<-*
p+C+ +
pF1KA0234 302 PKCILA 307
PF00628.19.fs: domain 1 of 2, from 259 to 307: score 66.2, E = 7.8e-21
*->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC
+C+vC++ d++++ll+CDgCd+ +H++Cl ppl+ eip + W C
pF1KA0234 259 ICQVCSR--GDEDDKLLFCDGCDDNYHIFCLLPPLP--EIPRgiWRC 301
peCkpk<-*
p+C+ +
pF1KA0234 302 PKCILA 307
PF02373.13.ls: domain 1 of 1, from 434 to 550: score 222.7, E = 7.8e-64
*->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek
wlYvGm fS ++wHiEd+++ySinylh+g+pk+WYg+Ps +ae++e
pF1KA0234 434 WLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLE- 479
lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ
+v++ P+l +++qpdl l++lvtl++P+ L+++g+pv r++Q
pF1KA0234 480 --EVMKML--TPEL-FDSQPDL-LHQLVTLMNPNT--LMSHGVPVVRTNQ 521
kpGEfVitfPgayHavfNlGfniaeavNF<-*
++GEfVitfP+ayH++fN G+n+aeavNF
pF1KA0234 522 CAGEFVITFPRAYHSGFNQGYNFAEAVNF 550
PF02373.13.fs: domain 1 of 1, from 434 to 550: score 220.7, E = 9.2e-65
*->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek
wlYvGm fS ++wHiEd+++ySinylh+g+pk+WYg+Ps +ae++e
pF1KA0234 434 WLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLE- 479
lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ
+v++ P+l +++qpdl l++lvtl++P+ L+++g+pv r++Q
pF1KA0234 480 --EVMKML--TPEL-FDSQPDL-LHQLVTLMNPNT--LMSHGVPVVRTNQ 521
kpGEfVitfPgayHavfNlGfniaeavNF<-*
++GEfVitfP+ayH++fN G+n+aeavNF
pF1KA0234 522 CAGEFVITFPRAYHSGFNQGYNFAEAVNF 550
PF02928.6.fs: domain 1 of 1, from 640 to 693: score 105.6, E = 1.4e-28
*->CqiCkttlyLSAvvCs.CspnklvCLeCALRHvkdLCssCepkdltL
C++Cktt++LSA++C++C p+ lvCL+ H++dLC+ C++++++L
pF1KA0234 640 CIKCKTTCFLSALACYdC-PDGLVCLS----HINDLCK-CSSSRQYL 680
lYRYtlDeLpsLv<-*
+YRYtlDeLp ++
pF1KA0234 681 RYRYTLDELPTML 693
PF02928.6.ls: domain 1 of 1, from 640 to 693: score 107.5, E = 3.7e-29
*->CqiCkttlyLSAvvCs.CspnklvCLeCALRHvkdLCssCepkdltL
C++Cktt++LSA++C++C p+ lvCL+ H++dLC+ C++++++L
pF1KA0234 640 CIKCKTTCFLSALACYdC-PDGLVCLS----HINDLCK-CSSSRQYL 680
lYRYtlDeLpsLv<-*
+YRYtlDeLp ++
pF1KA0234 681 RYRYTLDELPTML 693
PF08429.1.ls: domain 1 of 1, from 704 to 1030: score 472.5, E = 4.7e-139
*->etWrervreaLeaeskrLkrsLkelreLlsEgILNEkikfplFpeLl
+tW+++vr aLe+e++r krs++elr+L+sE+ ++++fp+ +eLl
pF1KA0234 704 DTWANKVRVALEVEDGR-KRSFEELRALESEA---RERRFPN-SELL 745
enLrafvqeAeswvekaqqLlsrKmqqtRrktgkavpagrrkkskaasvd
++L++++ e e+++ ++ +L s++ ++
pF1KA0234 746 QRLKNCLSEVEACIAQVLGLVSGQ-VAR---------------------- 772
deksrnkrtveeLraLlkqadsLpFdcpeliaqLkelleeiEeFreraqe
++ ++t++eLr Ll+q+ sLp+ +++ i +k++le++E+++ +a+e
pF1KA0234 773 --MDTPQLTLTELRVLLEQMGSLPCAMHQ-IGDVKDVLEQVEAYQAEARE 819
aLseeleslslqecesLleeGsslgvelPEleeLrkyleqakWldeYLIv
aL++ ++ s + + sLle G++lgve+PE+++L++++eqa+Wlde v
pF1KA0234 820 ALATLPS--SPGLLRSLLERGQQLGVEVPEAHQLQQQVEQAQWLDE---V 864
kestpwaststMEKDIDFEYKlrltlddvreLideGvslglpePadnkam
k++ +a++ r +l+ ++ L+++G+++++++ +++ka+
pF1KA0234 865 KQA--LAPSAH-----------RGSLVIMQGLLVMGAKIASSP-SVDKAR 900
aeLqelltkaeaWeekAkelLkyasqnhsldkLeslWkskeasnwfipvs
aeLqellt+ae+WeekA+ +L+ a+q+h +++Le++ ++e++n ipv+
pF1KA0234 901 AELQELLTIAERWEEKAHFCLE-ARQKHPPATLEAI--IRETEN--IPVH 945
lpnlrklkdaLqkarewikqvesLqsgldlkrsadpdgdsvptldelkel
lpn+++lk+aL+ka++wi++v ++q+ gd++p+ld+l++l
pF1KA0234 946 LPNIQALKEALTKAQAWIADVDEIQN-----------GDHYPCLDDLEGL 984
vaageelpvklSEelrqLekevarveaWrerakklFgKkNapltlLe<-*
va+g++lpv l EelrqLe +v+++++Wre+a+k+F+KkN+++tlLe
pF1KA0234 985 VAVGRDLPVGL-EELRQLELQVLTAHSWREKASKTFLKKNSCYTLLE 1030
PF08429.1.fs: domain 1 of 2, from 704 to 1030: score 470.8, E = 1.6e-138
*->etWrervreaLeaeskrLkrsLkelreLlsEgILNEkikfplFpeLl
+tW+++vr aLe+e++r krs++elr+L+sE+ ++++fp+ +eLl
pF1KA0234 704 DTWANKVRVALEVEDGR-KRSFEELRALESEA---RERRFPN-SELL 745
enLrafvqeAeswvekaqqLlsrKmqqtRrktgkavpagrrkkskaasvd
++L++++ e e+++ ++ +L s++ ++
pF1KA0234 746 QRLKNCLSEVEACIAQVLGLVSGQ-VAR---------------------- 772
deksrnkrtveeLraLlkqadsLpFdcpeliaqLkelleeiEeFreraqe
++ ++t++eLr Ll+q+ sLp+ +++ i +k++le++E+++ +a+e
pF1KA0234 773 --MDTPQLTLTELRVLLEQMGSLPCAMHQ-IGDVKDVLEQVEAYQAEARE 819
aLseeleslslqecesLleeGsslgvelPEleeLrkyleqakWldeYLIv
aL++ ++ s + + sLle G++lgve+PE+++L++++eqa+Wlde v
pF1KA0234 820 ALATLPS--SPGLLRSLLERGQQLGVEVPEAHQLQQQVEQAQWLDE---V 864
kestpwaststMEKDIDFEYKlrltlddvreLideGvslglpePadnkam
k++ +a++ r +l+ ++ L+++G+++++++ +++ka+
pF1KA0234 865 KQA--LAPSAH-----------RGSLVIMQGLLVMGAKIASSP-SVDKAR 900
aeLqelltkaeaWeekAkelLkyasqnhsldkLeslWkskeasnwfipvs
aeLqellt+ae+WeekA+ +L+ a+q+h +++Le++ ++e++n ipv+
pF1KA0234 901 AELQELLTIAERWEEKAHFCLE-ARQKHPPATLEAI--IRETEN--IPVH 945
lpnlrklkdaLqkarewikqvesLqsgldlkrsadpdgdsvptldelkel
lpn+++lk+aL+ka++wi++v ++q+ gd++p+ld+l++l
pF1KA0234 946 LPNIQALKEALTKAQAWIADVDEIQN-----------GDHYPCLDDLEGL 984
vaageelpvklSEelrqLekevarveaWrerakklFgKkNapltlLe<-*
va+g++lpv l EelrqLe +v+++++Wre+a+k+F+KkN+++tlLe
pF1KA0234 985 VAVGRDLPVGL-EELRQLELQVLTAHSWREKASKTFLKKNSCYTLLE 1030
PF00628.19.fs: domain 2 of 2, from 1117 to 1180: score 42.5, E = 3.2e-13
*->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe.....
+C vCg+ ag lqCD C +wfH+ C++ p + ++++ +++
pF1KA0234 1117 IC-VCGQ--VPAGVGVLQCDLCQDWFHGQCVSVPHLLTSPKPsltss 1160
...........WyCpeCkpk<-*
+ + +++++Cp C+++
pF1KA0234 1161 pllawwewdtkFLCPLCMRS 1180
PF00628.19.ls: domain 2 of 2, from 1117 to 1180: score 44.4, E = 3.5e-10
*->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe.....
+C vCg+ ag lqCD C +wfH+ C++ p + ++++ +++
pF1KA0234 1117 IC-VCGQ--VPAGVGVLQCDLCQDWFHGQCVSVPHLLTSPKPsltss 1160
...........WyCpeCkpk<-*
+ + +++++Cp C+++
pF1KA0234 1161 pllawwewdtkFLCPLCMRS 1180
//