GENSCAN 1.0	Date run:  6-Nov-116	Time: 19:28:45

Sequence gi568815597r:22020053_22242922 : 222870 bp : 48.86% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   5240   5320   81  0  0   95  103    58 0.436   7.61
 1.02 Term +  25903  26048  146  2  2   97   41    64 0.431   0.67
 1.03 PlyA +  26105  26110    6                               1.05

 2.00 Prom +  26217  26256   40                              -4.66
 2.01 Init +  32449  32620  172  0  1   86   96   117 0.659   9.90
 2.02 Intr +  32642  32690   49  0  1   55  105    69 0.430   3.04
 2.03 Intr +  54946  55039   94  1  1   47   77    33 0.009  -1.93
 2.04 Intr +  61670  61742   73  1  1  115   67    96 0.998   9.18
 2.05 Intr +  66387  66496  110  1  2  113  121     7 0.993   6.50
 2.06 Intr +  66617  66814  198  1  0   29  110   124 0.605   8.25
 2.07 Intr +  71376  71449   74  2  2  104   89    94 0.782   9.30
 2.08 Intr +  93265  93400  136  1  1   60   69    78 0.263   3.67
 2.09 Intr +  94357  94528  172  0  1   33  105    65 0.332   2.22
 2.10 Term +  95185  95264   80  2  2   99   44    18 0.173  -3.57
 2.11 PlyA +  95977  95982    6                               1.05

 3.08 PlyA -  98978  98973    6                               1.05
 3.07 Term - 100465  99998  468  1  0  125   47   721 0.998  66.67
 3.06 Intr - 101301 101159  143  1  2   45   67   180 0.842  11.67
 3.05 Intr - 101524 101393  132  2  0  142   73   126 0.929  17.12
 3.04 Intr - 109799 109564  236  1  2   91  100   496 0.996  48.43
 3.03 Intr - 111051 110981   71  0  2   12   84    60 0.299  -4.02
 3.02 Intr - 116345 116219  127  1  1  107  100    47 0.712   8.48
 3.01 Init - 122870 122794   77  2  2   99   87   141 0.921  13.98
 3.00 Prom - 135968 135929   40                              -5.46

 4.06 PlyA - 136911 136906    6                               1.05
 4.05 Term - 139098 138801  298  2  1   71   52   139 0.255   3.34
 4.04 Intr - 143281 143154  128  1  2   73   15   131 0.481   3.78
 4.03 Intr - 156489 156410   80  1  2   98   46    42 0.222   0.27
 4.02 Intr - 165716 165663   54  0  0   85   82    65 0.412   4.55
 4.01 Init - 169552 169075  478  1  1   93   86   200 0.735  15.90
 4.00 Prom - 180077 180038   40                              -5.46

 5.00 Prom + 181032 181071   40                              -2.96
 5.01 Init + 181888 182015  128  0  2   82   34    90 0.279   2.74
 5.02 Term + 185376 185490  115  0  1   51   55    92 0.222   0.24
 5.03 PlyA + 186103 186108    6                               1.05

 6.00 Prom + 186570 186609   40                              -3.56
 6.01 Init + 187779 187842   64  2  1   86   23    74 0.837   0.26
 6.02 Term + 187923 188254  332  1  2   84   48   161 0.521   6.52
 6.03 PlyA + 189357 189362    6                               1.05

 7.10 PlyA - 189879 189874    6                               1.05
 7.09 Term - 190391 190221  171  2  0   91   54    40 0.270  -1.27
 7.08 Intr - 192306 192199  108  0  0   32  116    35 0.004   1.18
 7.07 Intr - 201448 201273  176  2  2   40   87    89 0.065   3.66
 7.06 Intr - 206144 206006  139  2  1   88   39    19 0.058  -2.96
 7.05 Intr - 212000 211827  174  2  0  136  103    35 0.699   9.94
 7.04 Intr - 212620 212566   55  0  1  105   59    30 0.105   0.78
 7.03 Intr - 216041 215995   47  2  2  108   77    14 0.103  -0.49
 7.02 Intr - 216826 216713  114  1  0   75   13    92 0.131   1.04
 7.01 Init - 218702 218544  159  2  0   52   75   103 0.900   5.22

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  48816  48686  131  1  2   36   42   149 0.931   3.44
S.002 Init -  49884  49818   67  0  1   63   82    55 0.919   1.73
S.003 Init +  58427  58531  105  1  0   69   93    39 0.964   2.72


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:22020053_22242922|GENSCAN_predicted_peptide_1|75_aa
XGQTAAQKDKELLRSEKAAKNVSKTPHDFKEKHWLFLCLEPAGLWTGTETSALLVLRPSG
LDWSYTIGSPGSPAQ

>gi568815597r:22020053_22242922|GENSCAN_predicted_CDS_1|228_bp
nttgggcaaactgcggctcagaaagataaagaacttctccggagcgaaaaagctgctaag
aatgtatccaaaactccgcacgacttcaaagagaaacactggctcttcctctgtcttgag
cctgctggcctttggactggaactgaaacatcagctctcctggttctcaggccttcaggc
ttggactggagctacaccattggctctcctgggtctccagctcagtga

>gi568815597r:22020053_22242922|GENSCAN_predicted_peptide_2|385_aa
MQSIAPNSRAAPARACATGGRSQGSPGTALTRPSLFPFPVPPTSAGTQLCVSCALTSAEE
TPRSAANAPVEKLRVKAEGTSLSFQLKIESGLFGKLAVISPVSQKVFDNYAVTVMIGGEP
YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPF
LLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD
EAILAALEPPEPKKSRREAMSVAFSSRSFKEATVPDVATKSIVDPYIWQEACEDLRKKGS
PWAWEQWLPFWGSQGTWPECALSGTVSSSAGPGPPLNLEKALGYWCCSWRTTEPLSKQGD
FPWTGCSQEEAEKEVYFVTAFSRLS

>gi568815597r:22020053_22242922|GENSCAN_predicted_CDS_2|1158_bp
atgcagagcatagccccgaactcacgagctgcgccggcccgcgcgtgcgcgacaggcggg
cggagccagggcagtccaggcaccgccttgacccgccccagcctcttccccttccctgtt
cctcccacttccgcgggcacccaactgtgcgtctcctgcgcgctgacgtcagccgaggag
accccgcgcagtgctgccaacgccccggtggagaagctgagggttaaagcagagggaact
tcattatcattccaattgaagattgaaagtggcctgtttggtaaactggctgtcatctct
cctgtttctcagaaggtttttgacaactatgcagtcacagttatgattggtggagaacca
tatactcttggactttttgatactgcagggcaagaggattatgacagattacgaccgctg
agttatccacaaacagatgtatttctagtctgtttttcagtggtctctccatcttcattt
gaaaacgtgaaagaaaagtgggtgcctgagataactcaccactgtccaaagactcctttc
ttgcttgttgggactcaaattgatctcagagatgacccctctactattgagaaacttgcc
aagaacaaacagaagcctatcactccagagactgctgaaaagctggcccgtgacctgaag
gctgtcaagtatgtggagtgttctgcacttacacagaaaggcctaaagaatgtatttgac
gaagcaatattggctgccctggagcctccagaaccgaagaagagccgcagggaggccatg
tctgttgctttctcaagtagaagcttcaaggaggcaactgttcctgatgtcgctacaaag
tccattgttgacccttatatctggcaggaggcctgtgaggacttaagaaaaaaagggagt
ccttgggcttgggaacagtggctgcctttttggggcagccagggcacctggccagagtgt
gctctgtcgggcactgtcagctcttcagcaggccccggtcctcctcttaacctagagaag
gccctgggttattggtgttgttcttggcggaccaccgagcccctcagcaaacagggagac
ttcccatggactggttgttctcaggaagaggctgagaaggaggtctactttgtcactgca
ttttcacggctctcctag

>gi568815597r:22020053_22242922|GENSCAN_predicted_peptide_3|417_aa
MSPRSCLRSLRLLVFAVFSAAASNWLFPQPSREDSSMGQWPQDMKGCGDTGRMGLAKEEL
SAGKLGDKAVKPGKCQVQVLLNLTGCVALHMRYLAKLSSVGSISEEETCEKLKGLIQRQV
QMCKRNLEVMDSVRRGAQLAIEECQYQFRNRRWNCSTLDSLPVFGKVVTQGTREAAFVYA
ISSAGVAFAVTRACSSGELEKCGCDRTVHGVSPQGFQWSGCSDNIAYGVAFSQSFVDVRE
RSKGASSSRALMNLHNNEAGRKAILTHMRVECKCHGVSGSCEVKTCWRAVPPFRQVGHAL
KEKFDGATEVEPRRVGSSRALVPRNAQFKPHTDEDLVYLEPSPDFCEQDMRSGVLGTRGR
TCNKTSKAIDGCELLCCGRGFHTAQVELAERCSCKFHWCCFVKCRQCQRLVELHTCR

>gi568815597r:22020053_22242922|GENSCAN_predicted_CDS_3|1254_bp
atgagtccccgctcgtgcctgcgttcgctgcgcctcctcgtcttcgccgtcttctcagcc
gccgcgagcaactggctgttccctcagcccagcagggaggacagttcaatgggtcagtgg
ccacaggacatgaaaggttgtggggacacaggtcggatgggtctagcaaaggaagagctc
tctgctggcaaattgggggacaaggctgtgaagccaggcaaatgccaggttcaagtcctg
ctcaacctcactggctgtgtagccctgcacatgaggtacctggccaagctgtcgtcggtg
gggagcatctcagaggaggagacgtgcgagaaactcaagggcctgatccagaggcaggtg
cagatgtgcaagcggaacctggaagtcatggactcggtgcgccgcggtgcccagctggcc
attgaggagtgccagtaccagttccggaaccggcgctggaactgctccacactcgactcc
ttgcccgtcttcggcaaggtggtgacgcaagggactcgggaggcggccttcgtgtacgcc
atctcttcggcaggtgtggcctttgcagtgacgcgggcgtgcagcagtggggagctggag
aagtgcggctgtgacaggacagtgcatggggtcagcccacagggcttccagtggtcagga
tgctctgacaacatcgcctacggtgtggccttctcacagtcgtttgtggatgtgcgggag
agaagcaagggggcctcgtccagcagagccctcatgaacctccacaacaatgaggccggc
aggaaggccatcctgacacacatgcgggtggaatgcaagtgccacggggtgtcaggctcc
tgtgaggtaaagacgtgctggcgagccgtgccgcccttccgccaggtgggtcacgcactg
aaggagaagtttgatggtgccactgaggtggagccacgccgcgtgggctcctccagggca
ctggtgccacgcaacgcacagttcaagccgcacacagatgaggacctggtgtacttggag
cctagccccgacttctgtgagcaggacatgcgcagcggcgtgctgggcacgaggggccgc
acatgcaacaagacgtccaaggccatcgacggctgtgagctgctgtgctgtggccgcggc
ttccacacggcgcaggtggagctggctgaacgctgcagctgcaaattccactggtgctgc
ttcgtcaagtgccggcagtgccagcggctcgtggagttgcacacgtgccgatga

>gi568815597r:22020053_22242922|GENSCAN_predicted_peptide_4|345_aa
MATSKMAQVAQSLNSHIRGPPECQGPCWILEHHAAPELIPEVLNQLGLSGRTQVSELEAG
TTAQLALVIRKLQSEVEHFWYSNYSPAKLSSASSWDPASKSSVQRTPWQAPAERPALKEE
AKVLCHDPTFKEVLCPPHPSWLLPQDNGSKITPTKAPGQGEVNSVQEVKRIAKNLTTGPA
KVPLSSCQHLLLTSQGHVLHFARELLDVTHDAVTRQREDDSCSHPGGCSDNETSAVPAWD
STLTDRGELNQVTPEQISACTLASIAAKATPQGSPTMGARRAFAKAAQTVSLDLHWCWGS
DQHRDLSTVRAGKSMGVGAGRDLGRNLHFILNSLCDLDQSVPQLL

>gi568815597r:22020053_22242922|GENSCAN_predicted_CDS_4|1038_bp
atggccacctccaagatggcacaggtagctcaatctctcaatagccatatacgagggcct
cctgagtgtcagggcccatgctggatactggagcaccacgctgcaccagaactcatccca
gaagtgctcaaccagttgggactcagtggaagaacccaggtctctgagttggaagctggg
accacagcccagctggccctggtgatacggaagctgcagtccgaggtcgagcatttttgg
tattccaattactctccagccaagctcagctctgcaagctcatgggacccagccagcaaa
tcctctgtgcaacgcacaccttggcaagcacctgccgagcgcccagcactcaaggaagaa
gccaaggtgctgtgccatgatcccacctttaaggaagtcctctgtcctccacatccctcc
tggctccttccccaagacaatggaagcaagataacacccacgaaagccccaggccaaggt
gaggtgaatagtgttcaagaggtaaagcggattgccaaaaacctcaccactgggcctgcc
aaagtcccactctccagctgccagcacctgctcctcacctcacagggccacgtccttcac
tttgctcgggagttactggacgttactcatgacgcagtgacgcggcagcgtgaggatgac
agctgtagccaccccgggggctgctctgacaatgaaactagcgcagtgccggcatgggac
tcaacactgactgaccgaggggagctcaaccaagtcaccccagagcagatttcagcctgc
actctggccagcatagccgccaaagccacgccccagggctcccctactatgggagcaagg
agagcctttgccaaagctgctcagactgtctcactggacctccactggtgctggggaagt
gaccagcacagagacctgagcactgtccgtgcaggaaagagcatgggagttggggcaggc
agggacctaggccggaatctgcacttcatccttaattcactctgtgacctcgaccagtca
gtccctcagcttctctga

>gi568815597r:22020053_22242922|GENSCAN_predicted_peptide_5|80_aa
MQLVGNLTIRAALEPVQEVVCPLSLEVFKQKLQVWLDDPEASLSWHVGDDQEIRECTNEW
DGASFSSGRNWMCSRGHISG

>gi568815597r:22020053_22242922|GENSCAN_predicted_CDS_5|243_bp
atgcagctggtgggtaatctgaccattagggctgccctagagcctgtccaggaggtagtg
tgccctctgtcactggaggtgtttaagcagaagctgcaggtttggctggatgatccagaa
gcttctctctcctggcacgtgggtgatgatcaagagattcgtgaatgcacgaatgaatgg
gatggtgccagcttttcaagtggaaggaactggatgtgtagcagaggccacatcagtgga
tga

>gi568815597r:22020053_22242922|GENSCAN_predicted_peptide_6|131_aa
MGPGQVACPLALEILEAVLAPWCPSLSGHGEAQSRQSPWPGSNTDSVPTVWHLLIREEFA
WRTELGQLVCCNRDAAGWHGLGPSDWAAVFASSKSLALLEQRGIQDADPTEDEKATGSQT
PHPLTPQGVFG

>gi568815597r:22020053_22242922|GENSCAN_predicted_CDS_6|396_bp
atggggcccggccaggtggcttgtccattggctttggaaatcctggaggcagtccttgca
ccctggtgtccctcactttcaggccatggggaagcgcagagcaggcagagcccgtggcca
gggagcaacacagattcggtccccactgtctggcatctcctgatccgggaggaattcgcc
tggagaacagagcttgggcagctggtgtgctgtaaccgagacgcagctggttggcacggg
ctagggccttctgattgggccgccgtgtttgcaagctccaaatccttggctctccttgaa
caacgaggaattcaggatgctgatcccaccgaggatgaaaaggccacgggctcccagaca
ccccaccctcttactccccagggggtgtttggctga

>gi568815597r:22020053_22242922|GENSCAN_predicted_peptide_7|380_aa
MQRPNAESKGKNSVAQCVETYAATLPNPSADFALATPLPPRPLTVTGSRQLRELPHLQNG
EEQVHYTHALSFLDFTQRTFIPSSLQRWKELVKSSLPCGEKKRTKERTGVYFSPSTDEKI
EQPRKDVSPGQPLSKQVVFLGAKKNSRELGSGSIHGTAPTSKAAQQRLTGCPQTGPGTGT
GGQDEKPHAGVGRDPDEFPPRSGDAVGRNVGPSGSLSGQSQILKRLSPTATSRCGLDIDH
SGSIYTTGIGKCQIRACFLERAFCEIFASTPLSKTQPNPMCADFSCTKGGLGGSRNSMGV
VGKPSWNEGRQNSALKYRSSPVDKQPRWGGTSQKQQQKGDAAGTATGRNGTHWALRGSDH
IGDPTLDFKIQQKGWHWGQR

>gi568815597r:22020053_22242922|GENSCAN_predicted_CDS_7|1143_bp
atgcagcggcccaatgcagagagtaaaggcaagaattcagtggcccaatgcgtggaaaca
tacgcagccacgctccccaacccatccgctgattttgccctggccactcccctcccgcca
aggcccctgacagttacgggctctaggcagctcagggagttacctcatctgcaaaacggg
gaggagcaggttcactacacccacgcactgtccttcctggacttcacacagaggaccttc
attccatcctccctgcaacgatggaaggagctggtcaagtccagccttccttgtggggag
aagaagaggacaaaggaaaggacaggtgtatatttctccccatctactgatgagaaaatc
gagcagcccagaaaggatgtgagcccaggacaacctttgtccaagcaggtggtctttctg
ggtgccaagaagaatagtagggaacttggttctggtagcatccatggcactgccccaact
tccaaagctgctcagcaaagactcactggatgtcctcagaccggccctggcactgggaca
ggagggcaggatgagaagccccatgccggggtggggagagaccctgatgagtttcctcct
aggagcggggatgccgtgggcaggaatgtgggcccctctgggagcctttcaggccaaagt
cagatcttgaaaaggctcagccccacggcaacttcacgctgcgggctcgacattgaccac
agtgggagtatttacaccacgggaattggcaaatgccaaatcagggcttgctttctcgag
agggccttttgtgaaatatttgccagcacaccactgagcaagacacagcccaaccctatg
tgtgctgatttttcttgtactaaaggaggactggggggctccaggaacagcatgggggtt
gtggggaagccttcctggaatgagggacgacagaattctgctttgaagtatagaagttcc
ccagtggacaagcagccaaggtggggcggcaccagtcagaagcagcaacagaagggagat
gctgcaggaacggcaacaggcagaaacggcacacactgggctctgagaggcagtgatcac
atcggagaccccacacttgatttcaagatccagcaaaagggctggcactggggtcagaga
tga