GENSCAN 1.0	Date run:  8-Nov-116	Time: 12:45:53

Sequence gi568815597r:110263769_110489323 : 225555 bp : 44.85% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.09 PlyA -    352    347    6                               1.05
 1.08 Term -    996    987   10  2  1  122   50     2 0.048  -2.53
 1.07 Intr -   6516   6351  166  1  1   19   94   139 0.405   6.62
 1.06 Intr -   7263   7053  211  0  1   97   61    79 0.696   4.59
 1.05 Intr -   9885   9761  125  1  2   59   65    42 0.481  -0.70
 1.04 Intr -  19082  18921  162  0  0   48   44   134 0.621   4.95
 1.03 Intr -  19561  19475   87  2  0   54   75    64 0.165   1.64
 1.02 Intr -  29011  28973   39  2  0   84   98    24 0.031   1.20
 1.01 Init -  37954  37948    7  1  1   79   95     0 0.012   0.92
 1.00 Prom -  52175  52136   40                              -2.76

 2.00 Prom +  68535  68574   40                              -3.76
 2.01 Sngl +  75770  78511 2742  1  0   90   39  2080 0.917 196.22
 2.02 PlyA +  80485  80490    6                               1.05

 3.07 PlyA -  80611  80606    6                               1.05
 3.06 Term - 101887 101861   27  1  0  121   38    20 0.178  -1.63
 3.05 Intr - 113393 113182  212  0  2   48  105   182 0.992  14.53
 3.04 Intr - 115588 115085  504  2  0   81  110    89 0.687   3.35
 3.03 Intr - 117375 117214  162  1  0   90   98    48 0.969   5.95
 3.02 Intr - 118027 117884  144  2  0   82  117    17 0.940   4.25
 3.01 Init - 119177 119066  112  2  1   59   75    63 0.473   2.47
 3.00 Prom - 122046 122007   40                              -6.36

 4.00 Prom + 126317 126356   40                              -3.06
 4.01 Init + 132680 132755   76  1  1   98   68    96 0.602   8.03
 4.02 Term + 132797 132903  107  0  2   90   37    51 0.535  -1.23
 4.03 PlyA + 133383 133388    6                               1.05

 5.05 PlyA - 133641 133636    6                               1.05
 5.04 Term - 137815 137755   61  0  1   98   44    63 0.620   0.18
 5.03 Intr - 140268 140151  118  1  1   96   92    49 0.672   5.62
 5.02 Intr - 142611 142550   62  2  2   45   81    42 0.512  -2.42
 5.01 Init - 144098 143818  281  2  2  104   94    71 0.604   5.79
 5.00 Prom - 173173 173134   40                              -3.86

 6.00 Prom + 186998 187037   40                              -4.26
 6.01 Init + 187449 187520   72  2  0   78   98    37 0.630   3.32
 6.02 Intr + 190193 190318  126  1  0  130   73   146 0.991  18.18
 6.03 Term + 192464 192583  120  1  0  107   48   123 0.996   8.67
 6.04 PlyA + 193568 193573    6                               1.05

 7.06 PlyA - 194277 194272    6                              -0.45
 7.05 Term - 194926 194621  306  1  0   66   43   131 0.484   1.52
 7.04 Intr - 199955 199793  163  1  1   81   99     2 0.203   0.58
 7.03 Intr - 200600 200432  169  0  1   64   69   137 0.489   8.40
 7.02 Intr - 202601 202503   99  0  0   54  109    78 0.715   6.58
 7.01 Init - 204926 204869   58  2  1   84   95    53 0.984   7.07
 7.00 Prom - 212855 212816   40                              -1.96

 8.00 Prom + 216937 216976   40                              -3.96
 8.01 Init + 216998 217059   62  1  2   72  109    33 0.984   4.68
 8.02 Intr + 219007 219157  151  1  1   92   76   152 0.995  14.56
 8.03 Intr + 220146 220263  118  2  1   97   72   144 0.976  13.74
 8.04 Intr + 220938 221176  239  1  2   -2  103   151 0.434   4.93
 8.05 Intr + 223088 223242  155  1  2   99   12   217 0.794  14.07
 8.06 Intr + 224734 224866  133  1  1   42   94   100 0.094   6.65

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:110263769_110489323|GENSCAN_predicted_peptide_1|268_aa
MDALTAQAYKLTPREVLWFEFDPTKMHVETDPQCGGVGKWGPVTVFYWTQVHQSLRDLVT
VSQWFLNLNNYEHAYKSNVWNCKAKQGPSPGPQQPFEEASHCDQEHIVPRFAGEGQGGHQ
WAGRSNTVQIHSPNLVANSLNCHPQDPSIGFQAFLKRSFKRVPFSPPGSKSTEELIFHIN
RLLQCPGMCTSELRPPQSQSAGAEKCNATEAYFQRNEANAAGNIQTERTQRGESEGGMTS
TRGEDRGRSGTAHDQGKPVGRQCFSRDE

>gi568815597r:110263769_110489323|GENSCAN_predicted_CDS_1|807_bp
atggatgccctgacagcccaggcctataagctgacacccagagaagtgctatggtttgag
tttgaccccaccaaaatgcatgttgaaactgatccccaatgtggcggtgttgggaagtgg
ggcccggtgacagttttttactggactcaggttcatcagtctcttagggatttagtgact
gtaagtcaatggttcttgaacctgaacaactacgagcatgcttataaatccaatgtctgg
aactgcaaagccaagcaagggccatcccctggtccacagcaacccttcgaagaagcctcc
cactgtgaccaggagcacatagttccacgatttgctggagagggccagggtggccatcag
tgggcagggaggagcaacacagttcaaatccacagcccaaacctggtagccaattctctg
aactgtcatcctcaggatccttccattggcttccaagccttcctgaaaagatctttcaag
agggttccattcagccccccagggtctaaatctactgaagagctgatcttccacatcaat
agactcctccaatgtcctggaatgtgtacctctgaattgaggccaccgcagagccagtct
gcaggggctgaaaaatgcaatgcaactgaggcttatttccagaggaatgaggccaatgca
gcaggcaacatccaaacagaaaggacccagagaggagagtctgagggcggcatgacttca
acaaggggtgaggacagaggtagatcaggaactgctcatgaccaagggaagccagttgga
cgtcagtgtttttccagagacgagtag

>gi568815597r:110263769_110489323|GENSCAN_predicted_peptide_2|913_aa
MKGKERSPVKAKRSRGGEDSTSRGERSKKLGGSGGSNGSSSGKTDSGGGSRRSLHLDKSS
SRGGSREYDTGGGSSSSRLHSYSSPSTKNSSGGGESRSSSRGGGGESRSSGAASSAPGGG
DGAEYKTLKISELGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRR
PEDARAAKHARGRLVLYDRPLKIEAVYVSRRRSRSPLDKDTYPPSASVVGASVGGHRHPP
GGGGGQRSLSPGGAALGYRDYRLQQLALGRLPPPPPPPLPRDLERERDYPFYERVRPAYS
LEPRVGAGAGAAPFREVDEISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVD
IKRPSRGQTSTYGFLKFENLDMSHRAKLAMSGKIIIRNPIKIGYGKATPTTRLWVGGLGP
WVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRV
DFADTEHRYQQQYLQPLPLTHYELVTDAFGHRAPDPLRGARDRTPPLLYRDRDRDLYPDS
DWVPPPPPVRERSTRTAATSVPAYEPLDSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRL
PEESGGRHLDRSPESDRPRKRHCAPSPDRSPELSSSRDRYNSDNDRSSRLLLERPSPIRD
RRGSLEKSQGDKRDRKNSASAERDRKHRTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLK
SPSQKQDGGTAPVASASPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGG
KVAQLKITQRLRLDQPKLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSSSAASDTATST
QRPLRNLVSYLKQKQAAGVISLPVGGNKDKENTGVLHAFPPCEFSQQFLDSPAKALAKSE
EDYLVMIIVRGAS

>gi568815597r:110263769_110489323|GENSCAN_predicted_CDS_2|2742_bp
atgaagggaaaagagcgctcgccagtgaaggccaaacgctcccgtggtggtgaggactcg
acttcccgcggtgagcggagcaagaagttagggggctctggtggcagcaatgggagcagc
agcggaaagaccgatagcggcggtgggtcgcggcggagtctccacctggacaagtccagc
agtcgaggtggcagccgcgagtatgataccggtgggggcagctccagtagccgcttgcat
agttatagctccccgagcaccaaaaattcttcgggcgggggcgaatcgcgcagcagctcc
cggggtggaggcggggagtcacgttcctctggggccgcctcctcagctcccggcggcggg
gacggcgcggaatacaagactctgaagataagcgagttggggtcccagcttagtgacgaa
gcggtggaggacggcctgtttcatgagttcaaacgcttcggtgatgtaagtgtgaaaatc
agtcatctgtcgggttctggcagcggggatgagcgggtagcctttgtgaacttccggcgg
ccagaggacgcgcgggcggccaagcatgccagaggccgcctggtgctctatgaccggcct
ctgaagatagaagctgtgtatgtgagccggcgccgcagccgctcccctttagacaaagat
acttatcctccatcagccagtgtggtcggggcctctgtaggtggtcaccggcacccccct
ggaggtggtggaggccagagatcactttcccctggtggcgctgctttgggatacagagac
taccggctgcagcagttggctcttggccgcctgccccctccacctccgccaccattgcct
cgagacctggagagagaaagagactacccgttctatgagagagtgcgccctgcatacagt
cttgagccaagggtgggagctggagcaggtgctgctcctttcagagaagtggatgagatt
tcacccgaggatgatcagcgagctaaccggacgctcttcttgggcaacctagacatcact
gtaacggagagtgatttaagaagggcgtttgatcgctttggagtcatcacagaagtagat
atcaagaggccttctcgcggccagactagtacttacggctttctcaaatttgagaactta
gatatgtctcaccgggccaaattagcaatgtctggcaaaattataattcggaatcctatc
aaaattggttatggtaaagctacacccaccacccgcctctgggtgggaggcctgggacct
tgggttcctcttgctgccctggcacgagaatttgatcgatttggcaccatacgcaccata
gactaccgaaaaggtgatagttgggcatatatccagtatgaaagcctggatgcagcgcat
gctgcctggacccatatgcggggcttcccacttggtggcccagatcgacgccttagagta
gactttgccgacaccgaacatcgttaccagcagcagtatctgcagcctctgcccttgact
cattatgagctggtgacagatgcttttggacatcgggcaccagaccctttgaggggtgct
cgggataggacaccacccttactatacagagatcgtgatagggacctttatcctgactct
gattgggtgccacccccacccccagtccgagaacgcagcactcggactgcagctacttct
gtgcctgcttacgagccactggatagcctagatcgcaggcgggatggttggtccttggac
cgggacagaggtgatcgagatctgcccagcagcagagaccagcctaggaagcgaaggctg
cctgaggagagtggaggacgtcatctggataggtctcctgagagtgaccgcccacgaaaa
cgtcactgcgctccttctcctgaccgcagtccagaattgagcagtagccgggatcgttac
aacagcgacaatgatcgatcttcccgtcttctcttggaaaggccctctccaatcagagac
agacgaggtagtttggagaagagccagggtgacaagcgagaccgtaaaaactctgcatca
gctgaacgagataggaagcaccggacaactgctcccactgagggaaaaagccctctgaaa
aaagaagaccgctctgatgggagtgcacctagcaccagcactgcttcctccaagctgaag
tccccgtcccagaaacaggatggggggacagcccctgtggcatcagcctctcccaaactc
tgtttggcctggcagggcatgcttctactgaagaacagcaactttccttccaacatgcat
ctgttgcagggtgacctccaagtggctagtagtcttcttgtggagggttcaactggaggc
aaagtggcccagctcaagatcactcagcgtctccgtttggaccagcccaagttggatgaa
gtaactcgacgcatcaaagtagcagggcccaatggttatgccattcttttggctgtgcct
ggaagttctgacagccggtcctcctcttcctcagctgcatcagacactgccacttctact
cagaggccacttaggaaccttgtgtcctatttaaagcaaaagcaggcagccggggtgatc
agcctccctgtggggggcaacaaagacaaggaaaacaccggggtccttcatgccttccca
ccttgtgagttctcccagcagttcctggattcccctgccaaggcactggccaaatctgaa
gaagattacctggtcatgatcattgtccgtggtgcgtcctaa

>gi568815597r:110263769_110489323|GENSCAN_predicted_peptide_3|386_aa
MTKTFAIFFVVFQEEFEGTSEQIGWIGSIMSSLRFCAGPLVAIICDILGEKTTSILGAFV
VTGGYLISSWATSIPFLCVTMGLLPGLGSAFLYQVAAVVTTKYFKKRLALSTAIARSGMG
LTFLLAPFTKFLIDLYDWTGALILFGAIALNLVPSSMLLRPIHIKSENNSGIKDKGSSLS
AHGPEAHATETHCHETEESTIKDSTTQKAGLPSKNLTVSQNQSEEFYNGPNRNRLLLKSD
EESDKVISWSCKQLFDISLFRNPFFYIFTWSFLLSQLAYFIPTFHLVARAKTLGIDIMDA
SYLVSVAGILETVSQIISGWVADQNWIKKYHYHKSYLILCGITNLLAPLATTFPLLMTYT
ICFAIFAGGYLALILPVLKCLQEFRD

>gi568815597r:110263769_110489323|GENSCAN_predicted_CDS_3|1161_bp
atgaccaagacttttgcaattttctttgtggtctttcaagaagagtttgaaggcacctca
gagcaaattggttggattggatccatcatgtcatctcttcgtttttgtgcaggtcccctg
gttgctattatttgtgacatacttggagagaaaactacctccattcttggggctttcgtt
gttactggtggatatctgatcagcagctgggccacaagtattccttttctttgtgtgact
atgggacttctacccggtttgggttctgctttcttataccaagtggctgctgtggtaact
accaaatacttcaaaaaacgattggctctttctacagctattgcccgttctgggatggga
ctgacttttcttttggcaccctttacaaaattcctgatagatctgtatgactggacagga
gcccttatattatttggagctatcgcattgaatttggtgccttctagtatgctcttaaga
cccatccatatcaaaagtgagaacaattctggtattaaagataaaggcagcagtttgtct
gcacatggtccagaggcacatgcaacagaaacacactgccatgagacagaagagtctacc
atcaaggacagtactacgcagaaggctggactacctagcaaaaatttaacagtctcacaa
aatcaaagtgaagagttctacaatgggcctaacaggaacagactgttattaaagagtgat
gaagaaagtgataaggttatttcgtggagctgcaaacaactgtttgacatttctctcttt
agaaatcctttcttctacatatttacttggtcttttctcctcagtcagttagcatacttc
atccctacctttcacctggtagccagagccaaaacactggggattgacatcatggatgcc
tcttaccttgtttctgtagcaggtatccttgagacggtcagtcagattatttctggatgg
gttgctgatcaaaactggattaagaagtatcattaccacaagtcttacctcatcctctgc
ggcatcactaacctgcttgctcctttagccaccacatttccactacttatgacctacacc
atctgctttgccatctttgctggtggttacctggcattgatactgcctgtactgaaatgt
ctacaagagttcagagactag

>gi568815597r:110263769_110489323|GENSCAN_predicted_peptide_4|60_aa
MAGCRFQALPCGEAAKAWREIERSAAAGLGAKPLTARGRQGWRASLSECGARQAHTHPEL

>gi568815597r:110263769_110489323|GENSCAN_predicted_CDS_4|183_bp
atggcgggctgcaggttccaagccctgccctgcggggaggcagctaaggcctggcgagaa
atcgagcgcagcgccgctgctggcctgggtgctaagcccctcactgcccggggccggcag
ggctggcgggccagcctctccgagtgcggggcccgccaagcccacacccacccggaactc
tag

>gi568815597r:110263769_110489323|GENSCAN_predicted_peptide_5|173_aa
MEPGAGHLDGHRAGSPSLRQALCDGSAVMFSSKERGRCTVINFVPLEAPLRSTPRSRQVT
EACGGEGRAVPLGSEPEWSVGGMEATLEQHLEDTMKNPSIVGVLCTDSQGLNLGCRGTLS
DEHAGVISVLAQQAAKLTSDPTDIPVVCLESDNGNIMIQKHDGITVAVHKMAS

>gi568815597r:110263769_110489323|GENSCAN_predicted_CDS_5|522_bp
atggagccaggtgcaggtcacctcgacggtcaccgcgcggggagcccaagccttcgtcag
gctctgtgcgacggaagcgcagtgatgttttccagtaaagaacgcggacgttgcaccgtg
atcaattttgtccctttggaggcgccgttacggtccacgccccgctcgcgtcaagtgact
gaggcctgtggtggagaaggacgtgccgtgccgctgggttctgagccggagtggtcggtg
ggtgggatggaggcgaccttggagcagcacttggaagacacaatgaagaatccctccatt
gttggagtcctgtgcacagattcacaaggacttaatctgggttgccgcgggaccctgtca
gatgagcatgctggagtgatatctgttctagcccagcaagcagctaagctaacctctgac
cccactgatattcctgtggtgtgtctagaatcagataatgggaacattatgatccagaaa
cacgatggcatcacggtggcagtgcacaaaatggcctcttga

>gi568815597r:110263769_110489323|GENSCAN_predicted_peptide_6|105_aa
MRGATRVSIMLLLVTVSDCAVITGACERDVQCGAGTCCAISLWLRGLRMCTPLGREGEEC
HPGSHKVPFFRKRKHHTCPCLPNLLCSRFPDGRYRCSMDLKNINF

>gi568815597r:110263769_110489323|GENSCAN_predicted_CDS_6|318_bp
atgagaggtgccacgcgagtctcaatcatgctcctcctagtaactgtgtctgactgtgct
gtgatcacaggggcctgtgagcgggatgtccagtgtggggcaggcacctgctgtgccatc
agcctgtggcttcgagggctgcggatgtgcaccccgctggggcgggaaggcgaggagtgc
caccccggcagccacaaggtccccttcttcaggaaacgcaagcaccacacctgtccttgc
ttgcccaacctgctgtgctccaggttcccggacggcaggtaccgctgctccatggacttg
aagaacatcaatttttag

>gi568815597r:110263769_110489323|GENSCAN_predicted_peptide_7|264_aa
MRLSDIGKGESPDDHRGQAAAKTLACQTSSPEIQIQWLWDAAQDPGYFTSTPASGELKHI
REKIVRSFLDILLVYLTEEIPPGNASVVCWLQHVGAIFIIAIVQMGKLRYTETNMSVTDA
QQSLSSRQGAETGKDLLDKRTINHILPVTWTKWSSQDPSTAPQGGSQFRKGSTKVHQAAV
NGTSRKAMNVKGQAMVKMESWTWKGTLYPGPEPETKGESDSRAARRSQVTTAGDNVRKRR
QKQKQKQTKKGPCGGLAWLKWVLE

>gi568815597r:110263769_110489323|GENSCAN_predicted_CDS_7|795_bp
atgaggctcagtgacattggcaagggtgaaagcccagatgaccacaggggccaggcagct
gctaaaactctagcttgccagacttcctctccagaaatccagatccagtggctctgggat
gcggcacaggaccctgggtacttcacaagcaccccagcttctggggaattgaagcacatc
cgagaaaagattgttcgttccttcctggacatcttattggtttacctcactgaagagatc
cctccaggtaatgctagtgtggtgtgctggttacaacacgtaggtgctatttttattatt
gccattgtacagatggggaaactgaggtacacagaaacaaatatgtctgtgactgacgcg
cagcagagtctatcgagtaggcagggggctgagacaggaaaggatcttttggacaaaagg
accataaatcatatccttcctgtgacctggaccaagtggtcttcccaagacccaagcact
gcccctcagggagggtcacaatttagaaagggctccacaaaagtccaccaggcagcagtc
aatggtacctcgagaaaagctatgaatgtcaaaggacaagccatggtcaaaatggaatcc
tggacgtggaagggaactttatatccaggacctgagcctgaaaccaagggagaaagcgac
tcaagggctgcaagaaggtcccaagtcaccacagcaggtgacaatgtccgtaaaaggaga
caaaaacaaaaacaaaaacaaacaaagaaaggaccctgtgggggcctggcctggcttaag
tgggtcctggagtaa

>gi568815597r:110263769_110489323|GENSCAN_predicted_peptide_8|286_aa
MRGLVVFLAVFALSEVNAITRVPLHKGKSLRRALKERRLLEDFLRNHHYAVSRKHSSSGV
VASESLTNYLDCQYFGKIYIGTLPQKFTLVFDTGSPDIWVPSVYCNSDACQRIASIEAIF
LQGLLRGSALAGTVSGEKILRAPLTLGLCFRKPPTLRSVQVLHPQNMGKSLSIQYGTGSM
RGLLGYDTVTDLVEVMILLQVSNIVDPHQTVGLSTQEPGDVFTYSEFDGILGLAYPSLAS
EYALRLGFRNDQGSMLTLRAIDLSYYTGSLHWIPMTARILAVHCGQ

>gi568815597r:110263769_110489323|GENSCAN_predicted_CDS_8|858_bp
atgaggggccttgtggtattccttgcagtctttgctctctctgaggtcaatgccatcacc
agggttcctctgcacaaagggaagtcgctgaggagggccctgaaggagcgcaggctcctg
gaggacttcctgaggaatcaccattatgcagtcagcaggaagcactccagctctggggtg
gtggccagcgagtctctgaccaactacctggattgtcagtactttgggaagatctacatc
gggacccttccccagaagttcaccttggtgtttgatacaggctccccggatatctgggtg
ccctctgtctactgcaacagtgatgcctgtcagagaattgccagtattgaggccatattc
ttacaaggcctgctgaggggttcggccctggctggcaccgtgagtggtgagaagattcta
agggccccactaactctgggtctgtgtttcagaaaaccaccaacgcttcgatccgtccaa
gtcctccacccacagaacatgggcaagtccctgtccatccagtatggcacaggcagcatg
cggggcttgctgggctatgacactgtcaccgacctagtggaggtcatgattctcttgcag
gtctccaacattgtggacccccaccagactgtgggtctgagcacccaggaacctggcgac
gtcttcacctactccgagtttgatgggatcctggggctggcctatccctctcttgcctct
gagtacgcgctgcgccttggtttcaggaatgaccaggggagcatgctcacgctgagggcc
attgatctgtcgtactacacaggctccctgcactggatacccatgactgcaagaatactg
gcagttcactgtggacag