GENSCAN 1.0 Date run: 4-Aug-121 Time: 20:38:04 Sequence gi568815597f:78527916_78741611 : 213696 bp : 36.66% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Term + 8491 8772 282 0 0 127 33 150 0.921 7.84 1.02 PlyA + 8930 8935 6 1.05 2.00 Prom + 22392 22431 40 -4.55 2.01 Init + 25756 25917 162 0 0 73 -21 172 0.244 4.58 2.02 Term + 26471 26776 306 1 0 11 47 208 0.217 3.13 2.03 PlyA + 27204 27209 6 1.05 3.00 Prom + 29205 29244 40 -6.85 3.01 Sngl + 35654 36742 1089 1 0 60 39 269 0.998 15.98 3.02 PlyA + 37422 37427 6 1.05 4.04 PlyA - 37918 37913 6 1.05 4.03 Term - 60174 59888 287 1 2 61 38 170 0.276 3.88 4.02 Intr - 64278 64201 78 1 0 112 53 108 0.330 8.30 4.01 Init - 80133 80025 109 0 1 77 92 14 0.016 -0.71 4.00 Prom - 80303 80264 40 -4.65 5.00 Prom + 82418 82457 40 -3.65 5.01 Sngl + 83379 84095 717 2 0 43 49 332 0.953 20.77 5.02 PlyA + 84136 84141 6 1.05 6.00 Prom + 85333 85372 40 -3.65 6.01 Init + 100001 100478 478 1 1 68 76 270 0.931 19.42 6.02 Intr + 101036 101084 49 0 1 68 89 41 0.935 -0.98 6.03 Intr + 101805 102000 196 0 1 63 114 90 0.893 7.60 6.04 Term + 102078 102122 45 2 0 98 49 12 0.686 -5.47 6.05 PlyA + 102350 102355 6 1.05 7.00 Prom + 104212 104251 40 -9.55 7.01 Init + 105774 106085 312 2 0 90 100 181 0.957 16.87 7.02 Intr + 107422 107574 153 0 0 58 110 42 0.842 2.75 7.03 Intr + 109117 109288 172 0 1 57 89 101 0.757 5.69 7.04 Intr + 113106 113206 101 1 2 58 65 24 0.292 -3.99 7.05 Intr + 113520 113694 175 2 1 81 49 106 0.508 4.59 7.06 Term + 119430 119581 152 1 2 28 44 147 0.026 1.39 7.07 PlyA + 121034 121039 6 1.05 8.00 Prom + 122180 122219 40 -5.75 8.01 Init + 122281 122737 457 0 1 49 100 262 0.994 19.51 8.02 Intr + 126328 126364 37 2 1 85 80 22 0.496 -2.50 8.03 Intr + 127099 127294 196 1 1 50 121 58 0.930 3.80 8.04 Intr + 127447 127596 150 0 0 92 90 72 0.957 7.24 8.05 Intr + 131397 131568 172 2 1 80 105 76 0.763 7.09 8.06 Intr + 132639 132739 101 1 2 60 90 9 0.634 -2.79 8.07 Intr + 134789 135002 214 1 1 79 68 135 0.759 7.97 8.08 Intr + 144977 145040 64 0 1 103 48 44 0.026 -1.24 8.09 Intr + 150352 150445 94 1 1 62 94 79 0.070 4.95 8.10 Term + 178814 179035 222 1 0 64 42 202 0.939 9.13 8.11 PlyA + 179272 179277 6 1.05 9.07 PlyA - 180757 180752 6 1.05 9.06 Term - 188537 188495 43 1 1 104 39 35 0.549 -4.15 9.05 Intr - 189907 189836 72 0 0 83 115 54 0.285 5.20 9.04 Intr - 196671 196563 109 1 1 81 39 62 0.014 -0.98 9.03 Intr - 197164 197026 139 1 1 89 61 48 0.445 1.32 9.02 Intr - 200723 200638 86 0 2 83 99 32 0.536 2.42 9.01 Init - 201283 201085 199 1 1 69 33 123 0.142 4.01 9.00 Prom - 202416 202377 40 -7.55 10.00 Prom + 206106 206145 40 -5.05 10.01 Sngl + 211420 212169 750 0 0 48 43 230 0.444 10.42 10.02 PlyA + 213342 213347 6 1.05 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815597f:78527916_78741611|GENSCAN_predicted_peptide_1|93_aa VTMANIGINGNHSLETCETTLFALRMATWNQILDPWVYILLRKAVLKNLYKLASQCCGVH VISLHIWELSSIKNSLKVAAISESPVAEKSAST >gi568815597f:78527916_78741611|GENSCAN_predicted_CDS_1|282_bp gttacaatggccaacattggaataaatggaaatcattctctggaaacctgtgaaacaaca ctttttgctctccgaatggcaacatggaatcaaatcttagatccttgggtatatattctt ctacgaaaggctgtccttaagaatctctataagcttgccagtcaatgctgtggagtgcat gtcatcagcttacatatttgggagcttagttccattaaaaattccttaaaggttgctgct atttctgagtcaccagttgcagagaaatcagcaagcacctag >gi568815597f:78527916_78741611|GENSCAN_predicted_peptide_2|155_aa MENTQNQRSNPQRSLHLMNGNYSLPKSILGQWKCGPTPAAEGGTAKAQEPMWRGNPTSSQ VMDSNKNEMSEMTNIEFRIRVAKKLNEIQEKLKSTQNQKNNPRFEIEHDYFHKELLELKN SLEEFLNTVVSLKNRLDQTEERISDFKDCIFESNQ >gi568815597f:78527916_78741611|GENSCAN_predicted_CDS_2|468_bp atggagaacactcagaaccagagatctaacccccagcgcagtcttcacctaatgaatggg aattacagcctgcctaagtccatcttgggccaatggaaatgtgggccaacaccagctgct gaaggtggcactgccaaagctcaggaaccgatgtggagagggaatcccactagctcccaa gtaatggattctaacaagaatgaaatgtctgaaatgacaaatatagaattcagaatacgg gtggcaaagaaactcaatgagatccaagagaagttgaaatccacacaaaaccagaaaaac aatccaagatttgaaatagaacatgactattttcacaaagaacttctggaattaaaaaat tcactggaggaatttctaaatacagttgtaagccttaagaatagactagaccaaacagaa gaaagaatttcagatttcaaagactgtatctttgaatcaaaccagtaa >gi568815597f:78527916_78741611|GENSCAN_predicted_peptide_3|362_aa MSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNKWKNIPCSWVGRINIV KTAILPKVIYRFNAIPIKLPVTFFTELEKITLKFIWNQKRACITKSILSQKNKARGITLP DFKLYYKATVTKTAWYWYQNRDTDQWNRTEPSEIMPHIYNHLIFDKPDKNKKWGKDSLFN KWCWENWLAICRKLKLDPFLTPYTKINSRWIKDLHVRPKTIKTLEENLCNTIQGIGLGKD FMSKTPKAMATKDKIDKWDLIKLKSFCTAKETTTRVNRQPTEWENIFATYSSEKGLISRI YNELKQIYKKKTNNPIKKWAKDMNRHFSRHLCSQKTHEKMLIITGHQRNANQNRNEIPSH TS >gi568815597f:78527916_78741611|GENSCAN_predicted_CDS_3|1089_bp atgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaactt acaagggatgtgaaggacctcttcaaggagaactacaaaccacttctcaatgaaataaaa gaggatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtg aaaacagctatactacccaaggtaatttatagattcaatgccatccccatcaagctacca gtgactttcttcacagaattggaaaaaattactttaaagttcatatggaaccaaaaaaga gcctgcatcaccaagtcaatcctaagccaaaagaacaaagccagaggcatcaccctacct gacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaac agagatacagatcaatggaacagaacagagccctcagaaataatgccacatatctataac catctgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaat aaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttcctt acaccttatacaaaaattaattcaagatggattaaagacttacatgttagacctaaaacc ataaaaaccctagaagaaaacctatgcaataccattcagggcataggcttgggcaaggac ttcatgtctaaaacaccaaaagcaatggcaacaaaagacaaaattgacaaatgggatcta attaaactaaagagcttctgcacagcaaaagaaactaccaccagagtgaacagacaacct acagaatgggagaacatttttgcaacctactcatctgaaaaagggctaatatccagaatc tacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcg aaggatatgaacagacacttctcaagacatttatgcagccaaaaaacacatgaaaaaatg ctcatcatcactggccatcagagaaatgcaaatcaaaaccgcaatgagataccatctcac accagttag >gi568815597f:78527916_78741611|GENSCAN_predicted_peptide_4|157_aa MGMEPTEPGMGGYLLVCWLLRLWEKCSIWSECTISPDDMMTEVLPAVMDHAMSQRKETTP LDAVILAPVANSQVFFDSCGMGGHGPLKKCDPVHDPQREVKGPMLGPRLNLDVEGLQAYT ALQGPCYPRATEINWCRYLSLGLSLAPICPLSPGEAS >gi568815597f:78527916_78741611|GENSCAN_predicted_CDS_4|474_bp atgggcatggaacccaccgagcctggcatgggagggtatctcctggtctgctggttgcta agactgtgggaaaagtgcagtatttggtcagagtgtaccatttctccagatgacatgatg accgaagttctaccagctgttatggatcatgcgatgtcccagaggaaggaaaccacaccc ttggatgctgttattctggctcctgttgcaaattcacaggttttctttgacagctgtggc atgggcgggcatggtcctttgaagaagtgtgatccagtacatgatcctcagagggaggta aaaggacctatgttgggcccaagattgaatcttgatgtcgaaggccttcaggcatatact gcccttcaaggtccctgctatcccagagccacagaaatcaattggtgcaggtatctgagc cttgggttgtccctggcccctatctgtcctttgagtcccggagaagccagttag >gi568815597f:78527916_78741611|GENSCAN_predicted_peptide_5|238_aa MNIDAKILNKVLANQIQQHIKKLIYQDQVGFIPGMQCWFNIRKSINVIHCINRTNDKNHM IISIDAEKAFDKIQQGFMLKTLSKLSIDRMYLKIIRAIYDKPTDNIILNGQKLEGFPLKT GTRQVSLFSPLLLNTVLEVLTRAIRQKKEIKGIQLGKKEAKLSLFADDMIVRLENPIVSA QNLLKLIINFSKVSKYKINVQKSQAFLYTNNRQPNHELTPIHNYYKENKIPRNPTQGM >gi568815597f:78527916_78741611|GENSCAN_predicted_CDS_5|717_bp atgaacattgatgcaaaaatcctcaataaagtactggcaaatcaaatccagcagcacatc aaaaagcttatctaccaggatcaagtgggcttcatccctgggatgcaatgctggttcaac atacgcaaatcaataaacgtaatacattgcataaacagaaccaatgacaaaaaccacatg attatctcaatagatgcagaaaaggccttcgacaaaattcagcagggcttcatgctaaaa actctcagtaaactaagtattgatagaatgtatctcaaaattataagagctatttatgac aaacccacagacaatatcatactgaatgggcaaaagctggaaggattccctttgaaaact ggcacaagacaagtatcccttttctcaccactcctactcaacacagtgttggaagttctg actagggcaatcaggcaaaagaaagaaataaagggtattcaattaggaaaaaaggaagcc aaattgtctctgtttgcagatgacatgattgtacgtttagaaaaccccattgtctcagcc caaaatctccttaagctgataatcaacttcagcaaagtctcaaaatacaaaatcaatgtg caaaaatcacaagcattcctatacaccaataatagacagccaaatcatgagttaactccc attcacaattactacaaagagaataaaatacctaggaatccaactcaagggatgtga >gi568815597f:78527916_78741611|GENSCAN_predicted_peptide_6|255_aa MEVTTRLTWNDENHLRKLLGNVSLSLLYKSSVHGGSIEDMVERCSRQGCTITMAYIDYNM IVAFMLGNYINLHESSTEPNDSLWFSLQKKNDTTEIETLLLNTAPKIIDEQLVCRLSKTD IFIICRDNKIYLDKMITRNLKLRFYGHRQYLECEVFRVEGIKDNLDDIKRIIKAREHRNR LLADIRDYRPYADLVSEIRILLVGPVGSGKSSFFNSVKSIFHGHVTGQAVVGSDITSITE RGNPNIQLNAKSNGK >gi568815597f:78527916_78741611|GENSCAN_predicted_CDS_6|768_bp atggaagtgacaacaagattgacatggaatgatgaaaatcatctgcgcaagctgcttgga aatgtttctttgagtcttctctataagtctagtgttcatggaggtagcattgaagatatg gttgaaagatgcagccgtcagggatgtactataacaatggcttacattgattacaatatg attgtagcctttatgcttggaaattatattaatttacatgaaagttctacagagccaaat gattccctatggttttcacttcaaaagaaaaatgacaccactgaaatagaaactttactc ttaaatacagcaccaaaaattattgatgagcaactggtgtgtcgtttatcgaaaacggat attttcattatatgtcgagataataaaatttatctagataaaatgataacaagaaacttg aaactaaggttttatggccaccgtcagtatttggaatgtgaagtttttcgagttgaagga attaaggataacctagacgacataaagaggataattaaagccagagagcacagaaatagg cttctagcagacatcagagactataggccctatgcagacttggtttcagaaattcgtatt cttttggtgggtccagttgggtctggaaagtccagttttttcaattcagtcaagtctatt tttcatggccatgtgactggccaagccgtagtggggtctgatatcaccagcataaccgag cggggcaatcctaatatacaattaaatgctaaatcaaatggaaaatag >gi568815597f:78527916_78741611|GENSCAN_predicted_peptide_7|354_aa MTSVKRENNVPVANPKEMEMYEPPEEFKIIILRKHSKLQENTEKQFNKMRKMMSDQNKKF NRKVVIIIKKKQISEMKNTMGEMRNEIESINSRIDQVEESVNLKYRIYSVKDGKNGKSLP FMLCDTMGLDGAEGAGLCMDDIPHILKGCMPDRYQFNSRKPITPEHSTFITSPSLKDRIH CVAYVLDINSIDNLYSKMLAKVKQVHKEVLNCGIAYVALLTKVDDCSEVLQDNFLNMSRS MTSQSRVMNVHKMLGIPISNILMVGNYASDLELDPMKDILILSALRQMLRAADDFLEDLP LEETVPLGSAPEGTLCGGFDPTFSFHIALAEVLYEGSDLAADFYLDIQVFPYIL >gi568815597f:78527916_78741611|GENSCAN_predicted_CDS_7|1065_bp atgacgtcagtaaagagagaaaataacgtgccagtggccaatcctaaagaaatggagatg tatgaaccacccgaagaattcaaaataattattttaaggaagcacagcaaacttcaagaa aatacagagaaacaatttaacaaaatgagaaaaatgatgagtgatcagaataagaaattt aatagaaaggttgtaataattataaaaaagaaacaaatttcagagatgaaaaatacaatg ggtgaaatgagaaatgaaatagagagcatcaacagcagaattgatcaagtagaagagtct gtgaacttaaagtataggatatattctgttaaagatggaaaaaatggaaaatctctgcca tttatgttgtgtgacactatggggctagatggggcagaaggagcaggactgtgcatggat gacattccccacatcttaaaaggttgtatgccagacagatatcagtttaattcccgtaaa ccaattacacctgagcattctacttttatcacctctccatctctgaaggacaggattcac tgtgtggcttatgtcttagacatcaactctattgacaatctctactctaaaatgttggca aaagtgaagcaagttcacaaagaagtattaaactgtggtatagcatatgtggccttgctt actaaagtggatgattgcagtgaggttcttcaagacaactttttaaacatgagtagatct atgacttctcaaagccgggtcatgaatgtccataaaatgctaggcattcctatttccaat attttgatggttggaaattatgcttcagatttggaactggaccccatgaaggatattctc atcctctctgcactgaggcagatgctgcgggctgcagatgattttttagaagatttgcct cttgaggaaactgttccactaggcagtgccccagaggggactctgtgtgggggctttgat cccacattttccttccacattgccctagcagaggttctctatgagggctctgaccttgca gcagacttctacctggacatccaggtgtttccatatatcctctga >gi568815597f:78527916_78741611|GENSCAN_predicted_peptide_8|568_aa MAVTTRLTWLHEKILQNHFGGKRLSLLYKGSVHGFRNGVLLDRCCNQGPTLTVIYSEDHI IGAYAEESYQEGKYASIILFALQDTKISEWKLGLCTPETLFCCDVTKYNSPTNFQIDGRN RKVIMDLKTMENLGLAQNCTISIQDYEVFRCEDSLDERKIKGVIELRKSLLSALRTYEPY GSLVQQIRILLLGPIGAGKSSFFNSVRSVFQGHVTHQALVGTNTTGISEKYRTYSIRDGK DGKYLPFILCDSLGLSEKEGGLCRDDIFYILNGNIRDRYQFNPMESIKLNHHDYIDSPSL KDRIHCVAFVFDASSIQYFSSQMIVKIKRIRRELVNAGVVHVALLTHVDSMDLITKGDLI EIERCEPVRSKLEEVQRKLGFALSDISVVSNYSSEWELDPVKDVLILSALRRMLWAADDF LEDLPFEQIGRWFGGVEAWKRSGAGVPASQSTVNAATPRGLATLLKAENESNSGSCNKGH LRKKVGYKSAEEDEKRVSDPTQRGIPSAVYSYCAENENRKILKALATKNPKNLPCHQYCH KLLQPRPLSHSEIGNLEIEQHASEQPMG >gi568815597f:78527916_78741611|GENSCAN_predicted_CDS_8|1707_bp atggcagtgacaactcgtttgacatggttgcacgaaaagatcctgcaaaatcattttgga gggaagcggcttagccttctctataagggtagtgtccatggattccgtaatggagttttg cttgacagatgttgtaatcaagggcctactctaacagtgatttatagtgaagatcatatt attggagcatatgcagaagagagttaccaggaaggaaagtatgcttccatcatccttttt gcacttcaagatactaaaatttcagaatggaaactaggactatgtacaccagaaacactg ttttgttgtgatgttacaaaatataactccccaactaatttccagatagatggaagaaat agaaaagtgattatggacttaaagacaatggaaaatcttggacttgctcaaaattgtact atctctattcaggattatgaagtttttcgatgcgaagattcactggatgaaagaaagata aaaggggtcattgagctcaggaagagcttactgtctgccttgagaacttatgaaccatat ggatccctggttcaacaaatacgaattctgctgctgggtccaattggagctgggaagtcc agctttttcaactcagtgaggtctgttttccaagggcatgtaacgcatcaggctttggtg ggcactaatacaactgggatatctgagaagtataggacatactctattagagacgggaaa gatggcaaatacctgccgtttattctgtgtgactcactggggctgagtgagaaagaaggc ggcctgtgcagggatgacatattctatatcttgaacggtaacattcgtgatagataccag tttaatcccatggaatcaatcaaattaaatcatcatgactacattgattccccatcgctg aaggacagaattcattgtgtggcatttgtatttgatgccagctctattcaatacttctcc tctcagatgatagtaaagatcaaaagaattcgaagggagttggtaaacgctggtgtggta catgtggctttgctcactcatgtggatagcatggatttgattacaaaaggtgaccttata gaaatagagagatgtgagcctgtgaggtccaagctagaggaagtccaaagaaaacttgga tttgctctttctgacatctcggtggttagcaattattcctctgagtgggagctggaccct gtaaaggatgttctaattctttctgctctgagacgaatgctatgggctgcagatgacttc ttagaggatttgccttttgagcaaataggtagatggtttggtggtgtggaagcttggaag cggtcaggagcaggagtccctgccagtcagagtactgtgaatgctgctactcctcggggt ctagctaccctacttaaggcagaaaatgaaagcaactccgggtcttgtaacaaaggtcat ttaaggaagaaagttggctacaaaagtgctgaggaagatgagaagcgtgtatcagaccca acacaaagagggatcccttcagctgtgtattcttactgtgcggaaaatgagaacaggaag attcttaaagcccttgctaccaagaaccctaagaacctaccctgccaccaatactgccat aaactcctgcagcctagaccactgagtcattcagaaattggaaatttggaaattgaacaa catgcttctgaacaaccaatgggttga >gi568815597f:78527916_78741611|GENSCAN_predicted_peptide_9|215_aa MRQQATQDFDIQDQSPLTDLDPQKKQNKQDQPYYHPSFLPQGIALRRRTQAEQSRLTILR RQRPEFRTGVHRRWQGRTPLTGSCRTQPLVGGSTQTSELLLLGPLDFRTYTSTPSTPTLW FSGLWALTLSQSFGSVITKYLRLQLRLNYTTSFPGSPVCRQQIVELLGLHNHMNQFPYIE SFLRPLPEADAGSMFLVQTAERIKGGICGILRILV >gi568815597f:78527916_78741611|GENSCAN_predicted_CDS_9|648_bp atgagacaacaagcaacacaggactttgatatacaggatcaaagtcctcttacggactta gatccccaaaagaagcaaaacaaacaagatcagccttattatcacccaagctttttgcca caaggcatcgcactgagaaggagaacccaagcagagcagagcaggctcacaatattgagg aggcagagaccagagttcagaactggagtgcacaggcgctggcaagggcgaactccactc actggaagctgccgcactcaacccctagtgggagggagcacgcagacatcagagctcttg cttcttggacctttagacttccggacctatactagcactccttccacacccacactctgg ttctcaggtctttgggctttgaccttgtctcaatcttttggttctgtaataacaaaatac ctgaggcttcagctcagactgaattacaccactagctttcctggttctccagtctgcaga cagcagattgtggaacttcttggcttacataaccacatgaaccaattcccatatattgaa agcttcctgaggcccttgcctgaagcagatgctggctccatgtttcttgtacaaactgca gaacgaataaaaggaggaatctgtggaattctaagaatccttgtatga >gi568815597f:78527916_78741611|GENSCAN_predicted_peptide_10|249_aa MEEEISKQQSIQEVTWVLLTTFSFIREAEHKSLENMQADNAIEKKIPFSEEKFKLAAEIR ISNEELNVNPQNYGENVSRACQRASWQPLPSQAQRFRRKKWFHGLSPGSLCCMQSRNLMP YVPAAPAMTKRGQGIARAVASEGASPKSWQLPCGVESVGTQKSRIEVWEPLPRFQRMYGN AWVSRQKFAVRAGLSWRISAREVRKGNVGLHGPCRVPTEALTNGAVRRGPLSSRPQNGLS SRPQLTLCA >gi568815597f:78527916_78741611|GENSCAN_predicted_CDS_10|750_bp atggaggaagaaatttcgaagcagcaaagcattcaagaggtgacttgggtgctgttaaca acattcagttttataagggaagcagagcataaaagtttggaaaatatgcaggctgacaat gcaatagaaaagaaaatcccattttctgaggagaaattcaagctggctgcagaaattcgc ataagtaacgaggagctgaatgttaatcctcaaaactatggggaaaatgtctccagggca tgtcagagggcttcatggcaacccctcccatcacaggcccagagatttaggaggaaaaaa tggtttcatgggctgagcccagggtccctctgctgtatgcagtctagaaacttgatgccc tatgtcccagctgctccagccatgactaaaaggggccaaggtatagctagggctgttgct tcagagggtgcaagccccaagtcttggcagcttccatgtggtgttgagtctgtgggtaca cagaagtcaagaattgaggtttgggaacctctgcctagatttcaaaggatgtatggaaat gcctgggtgtccaggcagaagtttgctgtaagggcagggctttcatggagaatctctgct agggaagtgcggaagggaaatgtggggttgcatggcccatgcagagtccctactgaggca ctaactaatggagctgtgagaagagggccactgtcctccagaccccagaatggtctgtcc tccagaccccagcttacattgtgtgcctag