GENSCAN 1.0	Date run:  8-Nov-116	Time: 12:58:22

Sequence gi568815597f:62703787_62964156 : 260370 bp : 38.81% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 Intr -    494     17  478  1  1   23  -35   430 0.440  16.32
 1.01 Init -   8892   8831   62  0  2  104   92    27 0.829   4.57
 1.00 Prom -  17044  17005   40                              -4.45

 2.00 Prom +  22511  22550   40                              -2.15
 2.01 Sngl +  36626  37174  549  1  0   90   36   252 0.859  16.06
 2.02 PlyA +  37207  37212    6                               1.05

 3.11 PlyA -  40697  40692    6                               1.05
 3.10 Term -  41240  41164   77  0  2   74   48    37 0.053  -4.68
 3.09 Intr -  50106  49933  174  1  0   37   35   225 0.856  11.09
 3.08 Intr -  50864  50739  126  0  0   39  101   120 0.699   8.13
 3.07 Intr -  51375  51156  220  0  1   79   49    93 0.051   1.45
 3.06 Intr -  52158  52054  105  0  0   55   58   109 0.003   4.09
 3.05 Intr -  57536  57428  109  1  1   75   44    51 0.000  -1.23
 3.04 Intr -  59792  59634  159  1  0  117   61    26 0.022   0.98
 3.03 Intr -  70270  70144  127  2  1   15   96   142 0.573   6.52
 3.02 Intr -  74645  74554   92  1  2  102   81    25 0.562   1.92
 3.01 Init -  77094  77045   50  0  2   72   75    21 0.216  -0.32
 3.00 Prom -  78435  78396   40                              -3.95

 4.00 Prom +  82425  82464   40                              -5.85
 4.01 Init +  83084  83216  133  1  1   75  100    95 0.627   9.75
 4.02 Term + 108816 109471  656  1  2   59   41   248 0.882  10.37
 4.03 PlyA + 109579 109584    6                               1.05

 5.00 Prom + 110337 110376   40                              -3.65
 5.01 Init + 110514 110658  145  2  1   83   20    68 0.747  -0.17
 5.02 Intr + 112789 112947  159  2  0   82   24   118 0.341   3.84
 5.03 Intr + 115258 115549  292  2  1   25   93   149 0.500   4.37
 5.04 Intr + 117353 117423   71  2  2   42  110    64 0.924   1.91
 5.05 Intr + 125254 125390  137  2  2   54   86   132 0.947   8.97
 5.06 Intr + 130252 130330   79  0  1  104   96    28 0.865   3.41
 5.07 Intr + 130990 131066   77  2  2   98   69    22 0.363  -0.38
 5.08 Intr + 137669 137761   93  1  0   50   65   108 0.167   3.94
 5.09 Term + 144024 144167  144  2  0   49   32   123 0.209  -0.27
 5.10 PlyA + 144887 144892    6                               1.05

 6.11 PlyA - 145313 145308    6                               1.05
 6.10 Term - 153370 153170  201  1  0   79   49    97 0.146   1.31
 6.09 Intr - 155775 155709   67  2  1   61   86     7 0.131  -4.21
 6.08 Intr - 156530 156336  195  1  0   53   57   143 0.067   5.31
 6.07 Intr - 200234 200158   77  2  2   50   98    65 0.177   1.09
 6.06 Intr - 202413 202247  167  1  2   75  115   119 0.821  12.06
 6.05 Intr - 220185 220023  163  0  1   24   60   107 0.002   0.13
 6.04 Intr - 224161 223954  208  0  1   62   71    90 0.006   2.86
 6.03 Intr - 244800 244670  131  0  2   70   23   126 0.051   2.87
 6.02 Intr - 248517 248429   89  1  2   39  103    43 0.062  -0.33
 6.01 Intr - 255082 254889  194  0  2   27   10   189 0.052   3.21

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  32224  32087  138  1  0   57   76   123 0.806   8.19
S.002 Term - 224292 224129  164  1  2  100   49   123 0.917   6.72
S.003 Term - 255082 254878  205  0  1   27   49   194 0.821   5.26


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:62703787_62964156|GENSCAN_predicted_peptide_1|180_aa
MKAEGRQLLVASFSLHYSLNIITNAEKSLKDLMELKTTARELRDECTSLSSRCDQLEERV
SVMEDEMNEMKREEKIREKRIKRKEQSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTL
QDITQENFPNLARQAIQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKSW

>gi568815597f:62703787_62964156|GENSCAN_predicted_CDS_1|540_bp
atgaaggcagaagggagacaattgctggtagccagcttcagcctgcactattctctcaat
ataataaccaatgcagagaagtccttaaaggacctgatggagctgaaaaccacagcacga
gaactacgcgacgaatgcacaagcctcagtagccgatgtgatcaactggaagaaagggta
tcagtgatggaagacgaaatgaatgaaatgaagcgagaagagaagattagagaaaaaaga
ataaaaagaaaggaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatcta
catctgattggtgtacctgaaagtgacggggagaatggaaccaagttggaaaacactctg
caggatattacccaggagaacttccccaatctagcaaggcaggccattcaaattcaggaa
atacagagaacgccacaaagatactcctcgagaagagcaactccaagacacataattgtc
agattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaagttgg

>gi568815597f:62703787_62964156|GENSCAN_predicted_peptide_2|182_aa
MDLTDIYRTFHPTTTEYTFYSTAHRTFSKIDHMIGVNTFKKIEIISSTLSDHSGIKLEIN
SKRNLLYHANTWKLNNLLLNEHWVKNEINMKIKKFFKLNNNNDTTYQNLWDPAKVVLRGK
FIALNAYIKKSERAQTDGLRSHLKEEEKQKQTKPKPSRKKEIAKIGAELNEIETTTTTKT
KR

>gi568815597f:62703787_62964156|GENSCAN_predicted_CDS_2|549_bp
atggacttaacagacatatacagaacatttcatccaacaaccacagaatacacattctat
tcaacagcacatagaactttctcaaagatagaccacatgataggcgtcaatacatttaag
aaaattgaaattatatcaagcactctctcagaccacagtggaataaaactggagatcaac
tccaaaaggaatcttctataccatgcaaatacgtggaaattaaataacctgctcctgaat
gagcattgggtcaaaaatgaaatcaatatgaaaattaaaaaattcttcaaactaaacaac
aataatgatacaacctatcaaaacctctgggatccagctaaggtggtgttaagaggaaag
ttcatagccctaaatgcctacatcaaaaaatctgaaagagcacaaacagacggtctaagg
tcacacctcaaggaagaagagaaacaaaaacaaaccaaacccaaacccagcagaaaaaag
gaaatagccaagatcggagcagaactaaatgaaattgaaacaacaacaacaacaaaaacc
aaaagataa

>gi568815597f:62703787_62964156|GENSCAN_predicted_peptide_3|412_aa
MTEAPKLPFHEYCVVLMSGLLLECGSYDLLSVEVGQRIPFRPALTLKGTSLATVGKSTKW
AFGVPDSRPWLVDSISGPTLGQKVARCPEGTYRLVAFYIIYLFLCLSILYLTSLKDKLYD
KRNYLSYIFTDVTQACKTVPKTLTPQLLLGIWPMTALATSCWIVAMTALATSCWIVAKKN
LQRSLDPADQNNCALRCSSRNTSFSPRPQGGPRKGQQTCCWDPGAEWLSSLSTLGSAQKY
GKSGSWFQANQPSHSEESGVVREPFPRKPDTRVFSLAAMLVAFNWPTGVKLQTFAVSVTA
LKGGASGVVRPSPGVHDLTGFRSEAADLHGGQLASPRGARAGAVGGAVHQSNAVRQQSSA
LGRSMGSGTAEQGVAPIGELLAAQEPQERDSTMSHQQPTLPKPEGNQCFDSK

>gi568815597f:62703787_62964156|GENSCAN_predicted_CDS_3|1239_bp
atgaccgaggccccgaaactgccttttcatgaatactgcgtagttttaatgtcaggactc
cttctggaatgtgggtcttatgatttactttcagtcgaggtaggtcagagaattcctttc
aggccagctcttacactgaaaggtaccagtttggccacagtggggaagagcaccaagtgg
gcatttggggtccctgattccaggccttggctcgtggacagcatttctggacctaccctg
ggccagaaagtggcccgttgtcctgaagggacttatcgccttgtagcattctacataatt
tacttatttctctgtttgtctattctctatctcacttcactaaaagataagctctatgac
aaaagaaattacttgagttacatcttcactgatgtaactcaagcctgtaaaacagtgcct
aagacattgacaccccaactgctgttgggaatttggccaatgactgctctagctacttcc
tgctggatagtggcaatgactgctctagctacttcctgctggatagtggcaaagaagaac
ctgcaacggtccctggaccctgctgatcagaataattgcgctctccgatgcagcagcaga
aacactagtttttcccccagaccacaaggaggaccgaggaagggtcaacaaacttgttgt
tgggaccctggagctgaatggctttcctctctgtcaaccctcggctcagcccagaagtac
gggaaaagcggaagctggttccaagcaaaccaaccctcccactccgaagagtcgggggtt
gttagagagccctttcccagaaagcctgacacccgtgtctttagtctggcagccatgcta
gttgcttttaactggccgacaggagtgaagctgcagaccttcgcagtgagtgttacagct
cttaaaggtggcgcgtctggagttgttcgtccctccccaggggtccatgatctcactggc
ttcaggagtgaagctgcagaccttcatggaggccagctggcttcacctagaggagcccgt
gccggggccgtgggtggagctgtccaccagtccaatgctgtgcgccagcagtcctcagcc
cttgggcggtcaatgggatcaggcaccgcagagcagggggtggcacccattggggagctt
ctggccgcgcaggaaccacaggaaagagactcaactatgagccatcagcagccaacactc
ccaaaacctgaaggaaaccaatgcttcgattctaaataa

>gi568815597f:62703787_62964156|GENSCAN_predicted_peptide_4|262_aa
MGRGQLEDCWSGPIERWYFGQGGGGKMDSRGVQEVELGDGLDMEVLEVLAREIRQEKAIK
GIQIGREEVKLSLFADDMIVYLENPVVSAQNLLMLISNFSKVSEYKINVQKSQAFLYTSD
RQTESQIMSELPFTIATKRIKYLGIQLTRDVKDLFKENYKPLLKGIKEDTNKWKNIPCSW
IGRINIMKMAILPKVIYRFNAIPIKLPFTFFTELEKTTLKFIWNQKRARVAKTILSKKNK
AGGITLPDFKLYYRATVTKTDI

>gi568815597f:62703787_62964156|GENSCAN_predicted_CDS_4|789_bp
atggggagaggccagttagaagattgttggagtggcccaattgagagatggtattttgga
caaggtggtggtggtaagatggattccagaggtgttcaggaggtggaactaggcgatgga
ttagatatggaagtattggaagttctggccagggaaatcaggcaagagaaagcaataaag
ggtattcaaataggaagagaggaagtcaaattatctctttttgcagatgacatgattgta
tatttagaaaaccctgttgtctcagcccaaaatctccttatgctgataagcaatttcagc
aaagtctcagaatacaaaatcaatgtgcaaaaatcgcaagcattcctatataccagtgat
agacaaacagagagccaaatcatgagtgaactcccattcacaattgccacgaagagaata
aaatacttaggaatccaacttacaagggatgtgaaggacctcttcaaggagaactacaaa
ccgctgctcaagggaataaaagaggacacaaacaaatggaaaaacattccatgctcatgg
ataggaagaatcaatatcatgaaaatggccatactgcccaaagtaatttatagattcaat
gctatccccatcaagctaccattcactttcttcacagaattggaaaaaactaccttaaag
ttcatatggaaccaaaaaagagctcgcgtagccaagacaatcctaagcaaaaagaacaaa
gctggaggcatcacactacctgacttcaaactatactacagggctacagtaaccaaaaca
gatatatag

>gi568815597f:62703787_62964156|GENSCAN_predicted_peptide_5|398_aa
MDEAGNHPSQQTNTGTENQTLHVLTHKWELNNENTWRLGGEHHTPGPVNEDKTLPAESGC
TIEDHVIAGNVEEFRKDFISRIWLTYREEFPQIEGSALTTDYSESWTSHTVKKFTASFEA
SLSGEREFKTPTISLKETIGKYSDDHEMRNEVYHRKIISWFGDSPLALFGLHQLIEYGKK
SGKKAGDWYGPAVVAHILRKAVEEARHPDLQGITIYVAQDCTVYNSDVIDKQSASMTSDN
ADDKAVIILVPVRLGGERTNTDYLEFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIY
MDPHYCQSFVDVSIKDFPLEMSFRKMDPSCTIGFYCRNVQDFKRASEEITKGGKWSGRVE
SGKLEGQMSMMKSGLLEVPPKQPLFRSLPSSDFSISME

>gi568815597f:62703787_62964156|GENSCAN_predicted_CDS_5|1197_bp
atggatgaagctggaaaccatccttctcagcagactaacacaggaacagaaaaccaaaca
ctgcatgttctcactcataagtgggagttgaacaatgagaatacatggagactgggaggg
gaacatcacacaccagggcctgtcaatgaagataaaacgttacctgcagagtcgggatgt
acaatagaggatcacgtaattgcaggaaatgtagaagaatttcgtaaagatttcatttct
agaatatggctgacctacagggaagaattccctcaaatagaaggctcagctttgacaaca
gactactctgaatcatggacttcccacactgtcaaaaaatttactgcatcatttgaagca
tcactttcaggggaaagagaattcaaaaccccaacaatttctctgaaggaaacaattggg
aaatattctgatgatcatgaaatgcgaaatgaagtttatcataggaaaatcatctcttgg
tttggtgattcccccttggctctttttggcttacatcaactaatagaatatggaaagaag
tctgggaaaaaagcaggagattggtatggaccagctgtggttgctcacattttaagaaaa
gcagttgaagaagcaaggcatcctgatttacaaggaataactatttatgttgcacaagat
tgtacagtttacaattctgatgtaattgataaacagagtgcttccatgacttctgataat
gcagatgacaaagctgttattattctagttcctgttagacttggtggagaaagaaccaac
accgactacttagaatttgtgaagggtattttaagcctggaatattgtgtgggtattatt
ggtggcaaacctaaacagtcatattactttgctggatttcaagatgacagtttgatttac
atggatcctcattactgccaatcttttgtagatgtcagcataaaggatttccctcttgag
atgtcttttcgaaaaatggatcccagctgtacaataggattttactgtcgaaatgttcag
gacttcaaacgagcttctgaagaaatcaccaagggaggcaaatggtccgggagagttgag
agtggaaaacttgaaggtcagatgagtatgatgaagtcaggtttactggaagtgcctcca
aaacaaccactcttccgttctctgccttcttcagacttcagcatctctatggaatag

>gi568815597f:62703787_62964156|GENSCAN_predicted_peptide_6|497_aa
XCYQKLSTLKPKRNETGQRGGKGGEEKEKALGLKFVKPEMESIVTLIGHGVAPSLETLSP
PKSPEGDLLFQPVEGSFSLVFSARIKSSKIVPNQQDSRNKNALEDSEATKGKGSESLNEC
MEESCLLTRNTRTYYMNKKTVGKRESPSYKENTIFWGVILGRKEDRDICSSLGKDTRRKA
SFSQSPSHVQVRVKQVKHCHSWKRKSSQASNGCFTEGATRERKWGPSQILMRANAGHSSE
DVRTFCPFVVTQPCGVVYIYFIRSKRKRRRIQTARRQTELPEEESIAHPETKPRTLTACQ
VWAQLHSSSFNSRLGASALVKFMSNNKIIDNQMNYAGHSGDKERVYSFYFFKKKLPVEQP
QAGALGGTAEEGTVIIGDDSCMCVTIPGDLLVGQDVGVEDSGIDDPDPGLTNSPRATSSP
AGAIHGKFPTQATDWYESMVQGLGAPVNDNKEPDIKVLGEEHSRQGNQSVKVLGCQQTLH
VQRTESKPAWLAGRGKQ

>gi568815597f:62703787_62964156|GENSCAN_predicted_CDS_6|1494_bp
nnatgctatcaaaaattaagtacactgaagccaaaaagaaatgaaacaggacaaagagga
ggaaaaggaggagaagaaaaggagaaggcccttggactaaaatttgtaaaaccagagatg
gaatctatagtcactctaattggccatggtgtggctccaagcttggagaccttgagtcct
ccaaagtccccagagggagacctgttgttccaaccagtagaaggaagtttttcccttgtc
ttctctgctcgaataaaatcaagtaaaattgttccaaatcagcaggattcacgtaacaag
aatgccttagaggatagtgaagccacaaaagggaaggggtctgaatccctgaatgagtgc
atggaagagagctgcctgctgaccaggaataccaggacctattacatgaacaagaagact
gtgggaaagagggagtctccaagctataaggagaatacgattttctggggggtgatctta
ggcaggaaggaggacagagacatctgcagctccctaggaaaggacacaaggagaaaagcc
tccttttctcagagtccaagccatgtccaggtgcgggtgaagcaggtcaagcactgtcac
tcttggaaacgcaaaagctcccaggcgagcaatggctgcttcacagagggggccactcgt
gagagaaagtggggaccatctcaaatactcatgagagccaatgctggccactcttctgag
gatgtacgcacattctgtcctttcgtggtcacacagccctgtggagtggtttatatttac
ttcataaggtcaaaaagaaaaaggagacgaattcaaactgcacgacggcaaacagagctt
cccgaggaggaatccattgctcatcctgaaaccaagcccaggacactcactgcttgccag
gtatgggcccagttacattcgagctccttcaactcacgcctgggagcatcagcgcttgta
aaatttatgtccaataacaagataatagataatcagatgaattatgccggtcattcaggg
gacaaagaaagagtgtactcattttacttttttaaaaagaaattacctgtagaacagcct
caggcaggtgctttaggaggcactgcagaagaaggcactgttatcataggagatgacagc
tgcatgtgtgttaccatccctggagaccttctagtgggacaagatgtaggggtagaagat
agtggtattgatgatcctgaccctggactcactaattcacccagagcaacctccagtcct
gcaggtgccattcatggtaaattccctacacaggccacagactggtacgagtccatggtc
caggggctgggggcccctgtgaatgacaataaggagccagacataaaagttctgggcgaa
gagcactctaggcagggaaatcagagtgtaaaggtcctaggatgccagcaaactttgcat
gttcaaagaacagaaagcaagccagcgtggcttgcaggtagaggaaaacagtaa