GENSCAN 1.0	Date run:  4-Nov-116	Time: 23:04:33

Sequence gi568815597f:27730836_27950443 : 219608 bp : 45.58% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1768   1822   55  1  1   80  127    34 0.969   5.48
 1.02 Intr +   3196   3348  153  0  0   91   94   121 0.995  13.27
 1.03 Intr +   8350   8547  198  0  0    3   35   145 0.191   0.25
 1.04 Intr +   9160   9576  417  0  0   33    5   263 0.069   6.72
 1.05 Intr +  13819  13976  158  0  2  138   91    67 0.840  10.81
 1.06 Intr +  24360  24495  136  0  1   28   86   155 0.957   9.87
 1.07 Intr +  28691  28792  102  1  0   95   62    87 0.966   7.17
 1.08 Intr +  38096  38194   99  1  0   41   93    53 0.105   1.41
 1.09 Intr +  42389  42643  255  1  0   77   68   233 0.166  17.84
 1.10 Intr +  62106  62159   54  2  0  101   91     4 0.257   1.18
 1.11 Intr +  70843  70980  138  0  0   67   84    74 0.280   5.56
 1.12 Intr +  79411  79454   44  0  2   64   90    18 0.140  -3.36
 1.13 Intr +  81328  81433  106  1  1   83   78   169 0.892  15.62
 1.14 Intr +  87016  87088   73  0  1  121   76    63 0.988   7.38
 1.15 Term +  88815  88945  131  1  2  129   47    72 0.093   5.54
 1.16 PlyA +  89090  89095    6                               1.05

 2.00 Prom +  89867  89906   40                              -2.46
 2.01 Init + 100001 100056   56  1  2  100  105    61 0.965   9.34
 2.02 Intr + 101921 101981   61  2  1  111   64    11 0.554  -0.26
 2.03 Intr + 107864 108017  154  1  1   23   86   115 0.977   4.45
 2.04 Intr + 110179 110539  361  2  1   75   46   173 0.778   6.08
 2.05 Intr + 111612 111657   46  0  1  113   36    14 0.769  -2.89
 2.06 Intr + 112351 112495  145  0  1   41   94   167 0.908  12.46
 2.07 Intr + 116193 116257   65  1  2  109   97    -2 0.954   1.24
 2.08 Term + 119258 119611  354  1  0   34   40   264 0.987  10.69
 2.09 PlyA + 120813 120818    6                               1.05

 3.00 Prom + 133772 133811   40                              -4.46
 3.01 Init + 141737 141830   94  1  1  109   84   153 0.994  17.33
 3.02 Intr + 145753 145893  141  2  0   79   86   189 0.787  18.12
 3.03 Intr + 148809 149219  411  1  0  135   79   323 0.961  30.26
 3.04 Intr + 151136 152208 1073  0  2   95   74  1049 0.523  94.15
 3.05 Intr + 154460 154616  157  1  1   99   95    91 0.873  10.48
 3.06 Term + 156810 156862   53  1  2   77   55    60 0.415  -0.81
 3.07 PlyA + 158665 158670    6                               1.05

 4.11 PlyA - 160239 160234    6                               1.05
 4.10 Term - 161412 161328   85  2  1  150   36   104 0.999   8.53
 4.09 Intr - 163271 163177   95  2  2   67  108    43 0.991   2.96
 4.08 Intr - 163562 163455  108  2  0   40   91    52 0.689   1.18
 4.07 Intr - 166286 166170  117  2  0   70  109   106 0.977  11.56
 4.06 Intr - 166872 166798   75  0  0   66  103    29 0.772   1.91
 4.05 Intr - 176206 176093  114  1  0  103   95   131 0.989  15.94
 4.04 Intr - 176447 176346  102  2  0  107   91    39 0.985   6.47
 4.03 Intr - 183334 183228  107  2  2   71   39   152 0.970   8.53
 4.02 Intr - 183906 183587  320  2  2   65   33   254 0.668  13.20
 4.01 Init - 185710 185694   17  1  2   97   58    -4 0.557  -2.75
 4.00 Prom - 188467 188428   40                              -6.36

 5.00 Prom + 192734 192773   40                              -2.46
 5.01 Init + 204349 204409   61  0  1   69   92    68 0.456   4.73
 5.02 Intr + 207686 207739   54  0  0   74   88    47 0.419   2.25
 5.03 Intr + 210713 210741   29  0  2   48  115    33 0.292  -0.17
 5.04 Intr + 212732 212853  122  1  2   64   63    58 0.701   0.19
 5.05 Intr + 214350 214610  261  0  0  113   92   232 0.790  22.70
 5.06 Intr + 218230 218327   98  1  2   65  110    99 0.785   9.45
 5.07 Term + 218595 218602    8  1  2  109   52     0 0.337  -3.47
 5.08 PlyA + 219070 219075    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  29660  29746   87  1  0   96   48    75 0.926   1.96
S.002 Intr +  88815  88897   83  1  2  129   98    77 0.860  12.16


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:27730836_27950443|GENSCAN_predicted_peptide_1|706_aa
XKTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQC
AFDRKDDRKKDAGGKAGAPIVCMLNQGLKHVSEGCVFAYCQVEEKPYWKDPNNDFRKNLE
VTTVPTLLKYGTPQKLQPGQFRGQVPPYSRLWVHLDVMDGHFVPNVTFGYPVVESFQKQL
VQDLFFDIHVMVSKLEQWVKSIAIAEASQYTFHLEATKYSEALIEDIWENGMKVGLTIKP
GTTVEYLAPWTNQIDTALVITVEPGFGRQKFMDDMVDGKLLCWLCTLSYKRVLQKTKEQR
KHLSSSSRAGHQEKEQYSRLSGGGHYNSFSPDLALDSPGTDHFVIIAQLKEEVATLKKML
HQKDQMILEKEKKITELKADFQYQESQMRAKMNQMEKTHKEVTEQLQFGTSKNKYCYELH
NNTKLETMQTSINKRMDNQTFLRQPAGPGWRLLPVGERCRASRSQLLVMSYGPLDMYRNP
GPSGPQLRDFSSIIQTCSGNIQRISQASEPGYRAGGRELSRGQAWVRLLCFGGKSQKLRY
KEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESIARARAGSRLSAEERQREEQLV
SFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQG
DLIDSIEANVESSEVHVERATEQLQRAAYYQVKAGTKESHSVLQTF

>gi568815597f:27730836_27950443|GENSCAN_predicted_CDS_1|2121_bp
nntaaaaccaatacaatatgcaagaaatgtgctcagaacgtgcagttgtatggaacgccc
aaaccttgtcagtattgcaacataattgcagcatttattgggaataaatgccagcgctgc
acaaattcagaaaagaagtatggaccaccctattcttgtgaacagtgcaagcagcagtgt
gcatttgacaggaaagatgatagaaagaaggatgctggaggaaaagctggtgcccctatt
gtatgcatgctgaaccaggggctgaagcatgttagtgaaggatgtgtgttcgcctactgc
caagtagaagaaaagccttattggaaagatccaaataatgacttcagaaaaaacttggaa
gtaaccacagtgcctacactacttaaatatggaacacctcaaaaactgcaacctggccag
tttaggggtcaagtgcctccgtattctagactctgggtccacctggatgtcatggatggg
cactttgttcccaacgtcacctttggttatcctgtggtagaaagctttcaaaagcagcta
gtccaggaccttttctttgacatacatgtgatggtgtccaagctggaacagtgggtaaaa
tcaatagctatagcagaagccagtcagtacacctttcatcttgaggctactaagtactca
gaggctttgattgaagacatttgggagaatgggatgaaggttggccttaccatcaaacca
ggaactacagttgagtatttggcaccatggactaatcaaatagatacggccttggttatc
acagtggaacctgggtttggaaggcagaaattcatggatgatatggtagatgggaaattg
ctgtgctggctgtgcacactttcatacaaacgggtccttcagaagaccaaagagcagagg
aaacacctgagtagctcttctcgtgctggccaccaggagaaggagcagtatagtcgcctg
agtggtggtggccattataacagcttctccccagacctggctctggactcaccaggcact
gaccactttgtcatcattgcccaactgaaggaagaagtggctaccctgaagaagatgttg
catcaaaaggatcaaatgattttagagaaagagaagaagattacagagttgaaggctgat
tttcagtaccaggaatcgcagatgagagccaaaatgaaccagatggagaaaacccacaaa
gaagtcacagaacaactgcagtttggaactagtaaaaataaatactgctatgaacttcat
aataacaccaaattggaaacaatgcaaacatccatcaataagagaatggataatcaaact
tttctccgtcagcctgcgggtcccggctggcggctgcttccggtaggagagcggtgtaga
gcgagcaggtctcagctcctcgtcatgtcatacggtcccttagacatgtaccggaacccg
gggccctcggggccccagctccgggacttcagcagcatcatccagacgtgcagcggcaac
atccagcggatcagccaagccagtgagccggggtaccgagctggggggcgggagctgtcc
cggggacaggcctgggtaaggcttctttgttttggagggaagagccagaaactcaggtat
aaagagcagcgccagcagagacttcagaaggaacgcctcatgaatgacttctctgcagcc
ttaaacaatttccaggctgtgcagagaagggtatctgaaaaggaaaaggagagtattgcc
agagcaagagctggatctcgtctttctgcagaagagaggcaaagagaggagcagctggtc
tcatttgacagccatgaggagtggaaccagatgcagagccaggaggatgaggtggccatc
actgagcaggatttggaacttattaaagaaagagaaacggcaattcggcagctggaggct
gacattttggatgtcaatcagatatttaaagatttggccatgatgatccatgaccagggt
gatctgattgatagcatagaagccaatgtggaaagctcagaggtgcacgtcgaaagagcc
actgaacagttacagcgagctgcttactatcaggtaaaagcgggtaccaaagaaagtcac
tctgtgttgcagactttttag

>gi568815597f:27730836_27950443|GENSCAN_predicted_peptide_2|413_aa
MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDF
TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS
TRAYTLREKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDVIPCLCHCFVFGDPGF
WSIQLFYVAGNASDLAAGGSLESSNGPLAIWPPYPGCCYTSMAFSSNLTEFNTAHNKRIS
TLTIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRV
EGPGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLA
PDVDLTPVVPSAVNMNPAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI

>gi568815597f:27730836_27950443|GENSCAN_predicted_CDS_2|1242_bp
atggcggcagccgcgaactccggctctagcctcccgctgttcgactgcccaacctgggca
ggtaagccccctcccggtttacatctggatgtagtcaaaggagacaaactaattgagaaa
ctgattattgatgagaagaagtattacttatttgggagaaaccctgatttgtgtgacttt
accattgaccaccagtcttgctctcgggtccatgctgcacttgtctaccacaagcatctg
aagagagttttcctgatagatctcaacagtacacacggcactttcttgggtcacattcgg
ttggaacctcacaagcctcagcaaattcccatcgattccacggtctcatttggcgcatcc
acaagggcatacactctgcgcgagaagcctcagacattgccatcggctgtgaaaggagat
gagaagatgggtggagaggatgatgaactcaagggcttactggggcttccagaggaggaa
actgagcttgatgtaattccctgtttatgtcattgttttgtctttggggaccctggtttt
tggagtatacagctgttctatgtagctggaaatgccagtgacttagcagcagggggttct
cttgagtccagtaatgggcctttggcaatctggccaccttatccaggctgctgctatact
tccatggcttttagttcaaacctgacagagttcaacactgcccacaacaagcggatttct
acccttaccattgaggagggaaatctggacattcaaagaccaaagaggaagaggaagaac
tcacgggtgacattcagtgaggatgatgagatcatcaacccagaggatgtggatccctca
gttggtcgattcaggaacatggtgcaaactgcagtggtcccagtcaagaagaagcgtgtg
gagggccctggctccctgggcctggaggaatcagggagcaggcgcatgcagaactttgcc
ttcagcggaggactctacgggggcctgccccccacacacagtgaagcaggctcccagcca
catggcatccatgggacagcactcatcggtggcttgcccatgccatacccaaaccttgcc
cctgatgtggacttgactcctgttgtgccgtcagcagtgaacatgaaccctgcaccaaac
cctgcagtctataaccctgaagctgtaaatgaacccaagaagaagaaatatgcaaaagag
gcttggccaggcaagaagcccacaccttccttgctgatttga

>gi568815597f:27730836_27950443|GENSCAN_predicted_peptide_3|642_aa
MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
VCENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTE
GRVVTEDQLLMLEAVVMHLGIRSARCVLGMEGQQVILHLPLSQKGPFWTWEPSAPRTLLQ
VLQDPALKDLVLTCPTLPWHSLILRPQYEIQAIMHMRRTIVKIPSTLEVDVEDVTASSRH
VHFIKPLLLSEVLAWEGPFPLSMEILEVPEGRPIFLSPWVGSLQKGQRLCVYGLASPPWR
VLASSKGRKVPRHFLVSGGYQGKLRRRPREFPTAYDLLGAFQPGRPLRVVATKDCEGERE
ENPEFTSLAVGDRLEVLGPGQAHGAQGSDVDVLVCQRLSDQAGEDEEEECKEEAESPERV
LLPFHFPGSFVEEMSDSRRYSLADLTAQFSLPCEVKVVAKDTSHPTDPLTSFLGLRLEEK
ITEPFLVVSLDSEPGMCFEIPPRWLDLTVVKAKGQPDLPEGSLPIATVEELTDTFYYRLR
KLPACEIQAPPPRPPKNQGLSKQRRHSSEGGVKSSQVLGLQQHARLPKPKAKTLPEFIKD
GSSTYSKIPAHRKGHRPAKPQRQDLAPMPFSREVNLRCKGGP

>gi568815597f:27730836_27950443|GENSCAN_predicted_CDS_3|1929_bp
atggagccggtgccgctgcaggacttcgtgcgcgccttggaccccgcctccctcccgcgc
gtgctgcgggtctgctcgggggtctacttcgagggctccatctatgagatctctgggaat
gagtgctgcctctccacgggggacctgatcaaggtcacccaggtccgcctccagaaggtg
gtctgtgagaacccgaagaccagccagaccatggagctcgcccccaacttccagggctac
ttcacccccctcaacaccccacagagctatgaaaccctggaggagctggtctctgccaca
actcagagctccaagcagctgcccacttgcttcatgtcgacccacaggattgtcacagag
ggcagggtggtgactgaggaccagctcctcatgcttgaggctgtggtgatgcacctcggg
atccgctctgcccgctgtgtcctgggcatggagggtcagcaggtcatcctgcacctgccc
ctatcccagaaggggcccttctggacatgggagcctagtgcccctcgaactctgctccag
gtcctacaggatccagccctgaaagacctcgtcctcacctgccccaccctgccctggcat
tccctgatcctgcggccccagtatgagatccaagccatcatgcacatgcgcaggaccatt
gtcaagatcccttctaccctggaggtcgacgtggaggacgtcaccgcctcctcccggcac
gtccactttatcaaaccgctgctgctgagcgaggtcctggcctgggaaggccctttcccc
ctgtccatggagatcctggaggttcctgagggccgccccatcttcctcagcccgtgggtg
ggctccttgcaaaaaggccagaggctttgcgtctatggcctagcctcaccaccctggcgg
gtcctggcctcaagcaagggccgcaaggtgcccaggcacttcctggtgtcagggggctac
caaggcaagctgcggcggcggccaagggagttccccacggcctatgacctcctaggtgct
ttccagccaggccggccactccgggtggtggccacaaaggactgtgagggcgagagggag
gagaatcccgagttcacgtccctggctgtgggtgaccggctggaggtgctggggcctggc
caggcccatggggcccagggcagtgacgtggatgtcttggtttgtcagcggctgagtgac
caggctggggaggatgaggaggaagagtgcaaagaggaggcagagagcccagagcgggtc
ctgctgcccttccacttccctggcagtttcgtggaggagatgagtgacagccggcgctac
agcctggcagatctgactgcccagttttcactgccttgtgaggtcaaggtggtggccaag
gacaccagccaccccactgaccctctgacctccttcctgggcctgcggctggaggagaag
atcacagagccattcttggtggtgagcctagactctgagcctgggatgtgctttgagatc
cctccccggtggctggacctgactgttgtgaaggccaaggggcagccagacttgccagag
gggtctctccccatagccacagtggaggagctgacagacaccttctattatcgtcttcgg
aagttaccagcctgtgagatccaagcccccccacccaggccccctaaaaatcagggcctc
agcaagcagaggagacacagcagtgagggaggcgtcaagtcttctcaagtcttaggattg
cagcaacacgctcggctgcccaaacccaaggcgaagaccttgccagagttcatcaaggat
ggctccagtacgtacagcaagattcctgcccacaggaagggccacaggcccgctaagccc
caaaggcaggatctagctcccatgcccttctccagagaagtcaacctgcgctgcaaagga
ggaccctga

>gi568815597f:27730836_27950443|GENSCAN_predicted_peptide_4|379_aa
MADHLSAEGFALRKDGRGGFWSQLGAQYAFSGAWAEETGTSVASVSTDWLKRAPRELTGS
AIRGKAFVVPEKSSQSGAVAAAFCGFPLFPQTRTFSASLRRIVTKMWNSNDGGGFESYGS
SSYGGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEI
SQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGH
LRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAPISNPGMSEA
GNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSN
EGHIYSTVDDDHFKSTDAE

>gi568815597f:27730836_27950443|GENSCAN_predicted_CDS_4|1140_bp
atggcagatcacctaagtgcggagggttttgcccttcgtaaagatggccgcggaggcttt
tggagccaactgggagcgcagtacgcgttttctggagcatgggcagaggagacaggaaca
agcgtagcatccgtgagcaccgattggctgaagcgagcaccccgggagctgactggctcc
gccattcgcgggaaggcgtttgtggtgccagagaaaagtagccagagcggcgcagtggcg
gccgcgttctgtggttttccgctattcccccagacccgcaccttctcggcctctttgcgg
agaatcgtgaccaagatgtggaacagtaatgatgggggtggattcgaaagctatggcagc
tcctcatacgggggagccggcggctacacgcagtccccggggggctttggatcgcccgca
ccttctcaagccgaaaagaaatcaagagcccgagcccagcacattgtgccctgtactata
tctcagctgctttctgccactttggttgatgaagtgttcagaattgggaatgttgagatt
tcacaggtcactattgtggggatcatcagacatgcagagaaggctccaaccaacattgtt
tacaaaatagatgacatgacagctgcacccatggacgttcgccagtgggttgacacagat
gacaccagcagtgaaaacactgtggttcctccagaaacatatgtgaaagtggcaggccac
ctgagatcttttcagaacaaaaagagcctggtagcctttaagatcatgcccctggaggat
atgaatgagttcaccacacatattctggaagtgatcaatgcacacatggtactaagcaaa
gccaacagccagccctcagcagggagagcacctatcagcaatccaggaatgagtgaagca
gggaactttggtgggaatagcttcatgccagcaaatggcctcactgtggcccaaaaccag
gtgttgaatttgattaaggcttgtccaagacctgaagggttgaactttcaggatctcaag
aaccagctgaaacacatgtctgtatcctcaatcaagcaagctgtggattttctgagcaat
gaggggcacatctattctactgtggatgatgaccattttaaatccacagatgcagaataa

>gi568815597f:27730836_27950443|GENSCAN_predicted_peptide_5|210_aa
MRLLAWLIFLANWGGARAEPGMLAEERLNVMALSEIMPGKMDNKQANKVTQEMGEEVIAI
AEGEEILGVILVLSRNRMNRGQICSTLLQLRERPALKEDVFSPAGKFWHIADLHLDPDYK
VSKDPFQVCPSAGSQPVPDAGPWGDYLCDSPWALINSSIYAMKEIEPEPDFILWTGDDTP
HVPDEKLGEAAVLEIVERLTKLIREVFPDS

>gi568815597f:27730836_27950443|GENSCAN_predicted_CDS_5|633_bp
atgaggctgctcgcctggctgattttcctggctaactggggaggtgccagggctgaacca
gggatgttagcagaggagagattaaatgtgatggccttaagtgagatcatgccagggaag
atggacaataagcaagccaacaaggtgacacaagaaatgggggaggaagtgattgcaata
gcagagggtgaggaaatcctgggcgtcattcttgttttatcgagaaacaggatgaacaga
ggccagatctgctcaaccctccttcagctgagagagagaccagctttgaaggaggatgtt
ttttcccctgcagggaagttctggcacatcgctgacctgcaccttgaccctgactacaag
gtatccaaagaccccttccaggtgtgcccatcagctggatcccagccagtgcccgacgca
ggcccctggggtgactacctctgtgattctccctgggccctcatcaactcctccatctat
gccatgaaggagattgagccagagccagacttcattctctggactggtgatgacacgcct
catgtgcccgatgagaaactgggagaggcagctgtactggaaattgtggaacgcctgacc
aagctcatcagagaggtctttccagactcatga