GENSCAN 1.0	Date run: 24-Oct-119	Time: 21:30:31

Sequence gi568815597f:228635743_228843737 : 207995 bp : 44.54% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  14539  14754  216  0  0   67    8   381 0.784  24.69
 1.02 Intr +  14767  14933  167  0  2   -4   50   123 0.753  -1.94
 1.03 Term +  14935  15133  199  1  1   51   54   169 0.650   6.67
 1.04 PlyA +  15947  15952    6                               1.05

 2.00 Prom +  16150  16189   40                              -4.86
 2.01 Sngl +  25322  25570  249  1  0   60   42   178 0.724   5.48
 2.02 PlyA +  25852  25857    6                               1.05

 3.00 Prom +  25969  26008   40                              -4.46
 3.01 Init +  26023  26147  125  0  2   71   89   119 0.731   9.94
 3.02 Term +  30856  30940   85  1  1   93   49    52 0.601  -1.07
 3.03 PlyA +  31352  31357    6                               1.05

 4.07 PlyA -  32059  32054    6                               1.05
 4.06 Term -  32834  32769   66  2  0   97   42    74 0.632   1.64
 4.05 Intr -  33147  33073   75  0  0   59   96    57 0.133   3.31
 4.04 Intr -  37194  37164   31  2  1   52   46    61 0.018  -3.57
 4.03 Intr -  40060  40042   19  2  1  130   58    11 0.008  -2.03
 4.02 Intr -  44916  44409  508  0  1   31  110   249 0.471  13.95
 4.01 Init -  45222  45145   78  0  0   56   80    79 0.530   4.96
 4.00 Prom -  47983  47944   40                              -8.36

 5.00 Prom +  49192  49231   40                              -6.06
 5.01 Sngl +  51744  52085  342  2  0   30   46   338 0.455  19.84
 5.02 PlyA +  53615  53620    6                               1.05

 6.00 Prom +  68509  68548   40                              -1.66
 6.01 Sngl +  71959  72288  330  0  0   90   41   225 0.578  14.02
 6.02 PlyA +  72334  72339    6                               1.05

 7.00 Prom +  73372  73411   40                              -4.96
 7.01 Sngl +  73465  74547 1083  0  0   44   35   291 0.952  16.48
 7.02 PlyA +  74668  74673    6                               1.05

 8.00 Prom +  76596  76635   40                              -2.46
 8.01 Init +  87735  87750   16  2  1  103   66    14 0.673   1.18
 8.02 Term +  89609  89742  134  0  2   74   52    96 0.863   2.85
 8.03 PlyA +  90017  90022    6                               1.05

 9.00 Prom +  96242  96281   40                              -4.16
 9.01 Init + 100001 100262  262  1  1   56  105   307 0.716  26.43
 9.02 Intr + 101931 101989   59  1  2   62   82    32 0.797  -1.40
 9.03 Intr + 104649 104717   69  2  0   44   99    71 0.759   3.18
 9.04 Term + 107429 107998  570  1  0   70   44   657 0.609  53.94
 9.05 PlyA + 109241 109246    6                               1.05

10.03 PlyA - 109647 109642    6                               1.05
10.02 Term - 133136 132965  172  1  1   70   35   180 0.383   8.20
10.01 Init - 148007 147829  179  2  2   94   74    76 0.275   5.53
10.00 Prom - 154940 154901   40                              -2.96

11.00 Prom + 156924 156963   40                              -3.56
11.01 Init + 182409 182516  108  2  0   94   39   104 0.864   4.36
11.02 Term + 183439 183561  123  0  0   82   42   167 0.870   9.88
11.03 PlyA + 185388 185393    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:228635743_228843737|GENSCAN_predicted_peptide_1|193_aa
MLRKEAAAGWMVLGCRPYLAFTALSVPGSLNINLYSLVCASPGRLWGQRATCCQMPRSTL
LLQEGSILVAVMGSCHGQKLCEESARRVVLTSLLACLPSCWRVYFLKGGYETFFQGCMDV
KLVSLVSNERALISQCGKLVVLNINYRPAYDQGGPVEILSSLYLGGAYHASKCKFLIKLY
ITAQLNVPLWTWL

>gi568815597f:228635743_228843737|GENSCAN_predicted_CDS_1|582_bp
atgctccgcaaggaggcagcggcgggctggatggtgcttggctgccggccctacctggcc
tttaccgccttgagcgtgcctggctcactcaacatcaacctctattcactggtgtgcgcc
agcccggggcggctgtggggtcagcgtgctacttgctgccagatgcctcggagcacgctg
ctgctgcaggagggcagcatcctggtggccgtgatggggagctgccacgggcagaagctg
tgcgaggagagtgcccggcgggttgtcctcacctcactgctcgcctgcctgccctcctgc
tggcgggtctacttcctcaaagggggatatgagaccttcttccagggttgcatggatgta
aaactcgtttcactcgtttcaaatgagagagctctcatcagccagtgtggaaagctagta
gtgctaaacatcaactacaggccagcttatgatcagggtggtccagttgaaatcctttcc
tccctctaccttggaggtgcctaccatgcatccaagtgcaagttcctcatcaagctatac
atcacagcccagctgaatgtccccttgtggacctggctgtga

>gi568815597f:228635743_228843737|GENSCAN_predicted_peptide_2|82_aa
MSELPFTVATKRIKYLGIQLTRDVKDLFKENYKLLLNKIKEETNKWKNIPCSWIGSINIM
KMAVLPKVIYRFNAIPIKLPMI

>gi568815597f:228635743_228843737|GENSCAN_predicted_CDS_2|249_bp
atgagtgaactcccattcacagttgctacaaagagaataaaatacctaggaatccaactt
acaagggatgtgaaggacctcttcaaggagaactacaaactactgctcaacaaaataaag
gaggagacaaacaaatggaagaacattccatgctcatggataggaagcatcaatatcatg
aaaatggccgtactgcccaaggtaatttatagattcaatgccatccccatcaagctacca
atgatttaa

>gi568815597f:228635743_228843737|GENSCAN_predicted_peptide_3|69_aa
MGKDVMTETPKAMATKAKIDKWGLNKLKSFCTAKETTIRVNSLQCKSILAQGGVAAPVWK
PAGNVHPCD

>gi568815597f:228635743_228843737|GENSCAN_predicted_CDS_3|210_bp
atgggcaaggacgtcatgactgaaacaccaaaagcaatggcaacaaaagccaaaattgac
aaatggggtctaaataaattaaagagcttctgcacagccaaagaaactaccatcagagtg
aacagcctccagtgtaagagtattcttgctcagggtggtgtggcagcccctgtttggaag
ccagcagggaatgtgcacccctgtgactga

>gi568815597f:228635743_228843737|GENSCAN_predicted_peptide_4|258_aa
MSQTSRKALEQFPEKIPYGTIRQIPQSAPDIRKKLQKLESGLQTPQQELINLAFKVYNNR
EEVARQQRISELQLLASAVRQPTTTSPAYKKTSEHPSHSSQRLLKNILVDLVSNAKSLAT
GPQNAHGPGFLLSRALSVQAPTGGQTVRLTLLLLLKPLEPKPNVPWPTPSRSDAAGSPRK
PPGPSQMLWVTLTVEGQSYKLLWKSGCCYLQGDRKSEEEKSDTMPEQAASLLAQAFQNTS
DAKCVWWFALTDHFSDTS

>gi568815597f:228635743_228843737|GENSCAN_predicted_CDS_4|777_bp
atgagccagacctccaggaaggcattagagcagttccctgagaagatcccctatggaact
atcaggcagattccccagtcagctcctgacattagaaaaaagcttcaaaaattggaatcc
ggccttcaaaccccacaacaggaattaatcaacctcgccttcaaggtgtacaataataga
gaggaggtggccagacagcaacgcatttctgagttacagctacttgcctccgctgtaaga
caacccacaaccacatctccagcatacaaaaaaacttcagaacatccaagccacagctcc
cagaggctccttaaaaacatcctcgtggaccttgtttcaaatgccaaaagcctggccact
gggcctcagaatgcccacggcccgggattcctcctgagccgtgccctgtctgtgcaggcc
cccactggaggtcagactgtccgactcacattgctgctgctcctgaagcccctggagccc
aaacccaatgttccctggccaactccttccagatctgatgctgccggatcacctcggaag
cctcctggaccatcacagatgctttgggtaactctcacagtggagggtcaatcatataaa
ctcctgtggaaatcgggctgctgctacctgcagggagacagaaagtcagaagaggagaaa
agtgacactatgccagaacaggcagctagtctgctggctcaagccttccagaacacttct
gatgccaaatgtgtgtggtggtttgccctcaccgaccatttctccgacaccagctaa

>gi568815597f:228635743_228843737|GENSCAN_predicted_peptide_5|113_aa
MKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKSVNQSLLELHKLATDKNDPHL
CDFIETHYLNKQVKAIKELGEHVTNLCKMGAPESGSAEYLLDKHTLGDSDNES

>gi568815597f:228635743_228843737|GENSCAN_predicted_CDS_5|342_bp
atgaagctgcagaaccaacgaggtggccgaatcttccttcaggatatcaagaaaccagac
tgtgatgactgggagagcgggctgaatgcgatggagtgtgcattacatttggaaaaaagt
gtgaatcagtcactactggaactgcacaaactggccactgacaaaaatgacccccatttg
tgtgacttcattgagacacattacctgaataagcaggtgaaagccatcaaagaattgggt
gagcacgtgaccaacttgtgcaagatgggagcgcccgaatctggctcggcggaatacctc
ttagacaagcacaccctgggggacagtgataatgaaagctaa

>gi568815597f:228635743_228843737|GENSCAN_predicted_peptide_6|109_aa
MEKNQSRKTGNSKKQSASPPPKECSSSPATEQSWTENDFDKLREEGFRQSNYSELWEDIQ
TKGKEVENFEKNLEEYITRITNTEKCLKELMELKTKARELHEECRSLRS

>gi568815597f:228635743_228843737|GENSCAN_predicted_CDS_6|330_bp
atggagaaaaaccagagcagaaaaactggaaactctaaaaagcagagtgcctctcctcct
ccaaaggaatgcagttcctcaccagcaacggaacaaagctggacagagaatgactttgac
aagctgagagaagaaggcttcagacaatcaaattactccgagctatgggaagacattcaa
accaaaggcaaagaagttgaaaactttgaaaaaaatttagaagaatatataactagaatc
accaatacagagaagtgcttaaaggagctgatggagctgaaaaccaaggctcgagaacta
catgaagaatgcagaagcctcaggagctga

>gi568815597f:228635743_228843737|GENSCAN_predicted_peptide_7|360_aa
MGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYS
KIDHIVGSKALLSKCKRTEIITNYLSDHSAIKLELRIKNLTQNHSTTWKLNNLLLNDYWV
HNEMKAEIKMFFETNENKDTTYQNLWDTFKAVCRGKFIALNAHKRKQERSKIDTLTSQLK
ELEKQEQTYSKASRRQEITKIRAELKEIETQKTLQKINESRSWFFERINKIDRPLARLIK
KKREKNQIGAIKNDKGDITTNSTEIQTTIREYYKHLYANKLENLEEMDKFLDIYTLPGLN
QEEVESLNRPIIGAEIVAIINSLPTKKSPGPDGFTAKFYHRYKEELVPFLLKLFHSIEKE

>gi568815597f:228635743_228843737|GENSCAN_predicted_CDS_7|1083_bp
atgggagactttaacaccccactgtcaacattagacagatcaacgagacagaaagtcaac
aaggatacccaggaattgaactcagctctgcaccaagcagacctaatagacatctacaga
actctccaccccaaatcaacagaatatacatttttttcagcaccacaccacacctattcc
aaaattgaccacatagttggaagtaaagctctcctcagcaaatgtaaaagaacagaaatt
ataacaaactatctctcagaccacagtgcaatcaaactggaactcaggattaagaatctc
actcaaaaccactcaactacatggaaactgaacaacctgctcctgaatgactactgggta
cataacgaaatgaaggcagaaataaagatgttctttgaaaccaacgagaacaaagacaca
acataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatagcacta
aatgcccacaagagaaagcaggaaagatccaaaattgacaccctaacatcacaattaaaa
gaactagaaaagcaagagcaaacatattcaaaagctagcagaaggcaagaaataactaag
atcagagcagaactgaaggaaatagagacacaaaaaacccttcaaaaaattaacgaatcc
aggagctggttttttgaaaggatcaacaaaattgatagaccgctagcaagactaataaag
aaaaaaagagagaagaatcaaataggagcaataaaaaatgataaaggggatatcaccacc
aattccacagaaatacaaactaccataagagaatactacaaacacctctatgcaaataaa
ctagaaaatctagaagaaatggataaattccttgacatatacactctcccaggactaaac
caggaagaagttgaatctctgaatagaccaataataggagctgaaattgtggcaataatc
aatagcttaccaaccaaaaagagtccaggaccagatggattcacagccaaattctaccac
aggtacaaggaggaactggtaccattccttttgaaactattccactcaatagaaaaagag
taa

>gi568815597f:228635743_228843737|GENSCAN_predicted_peptide_8|49_aa
MMFYTQVQRSGIQFQNTDGRVDAAILGAVALSFCSLSKGLVMSNPEHLP

>gi568815597f:228635743_228843737|GENSCAN_predicted_CDS_8|150_bp
atgatgttctacacacaggtacagaggtctgggattcagttccagaacacggatggccgt
gtggatgctgcaatcctgggggctgtggccctgagcttctgcagcctctcaaagggacta
gtgatgagcaaccctgagcatctcccttga

>gi568815597f:228635743_228843737|GENSCAN_predicted_peptide_9|319_aa
MPPQQGDPAFPDRCEAPPVPPRRERGGRGGRGPGEPGGRGRAGGAEGRGVKCVLVGDGAV
GKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQTFRTNFKTFEEEP
SSKTMKNKLLNQRVFYHLPDPFMKNVKVIFLLMRIHENITFGYFAWLQDEFDKLRPLCYT
NTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCK
EKPVPEEAAKLCAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKSRT
PDKMKNLSKSWWKKYCCFV

>gi568815597f:228635743_228843737|GENSCAN_predicted_CDS_9|960_bp
atgcccccgcagcagggggaccccgcgttccccgaccgctgcgaggcgcctccggtgccg
ccgcgtcgggagcgcggtggacgcgggggacgcgggcctggggagccggggggccggggg
cgtgcggggggtgccgaggggcgcggcgtcaagtgcgtgctggtcggcgacggcgcggtg
ggcaagacgagcctggtggtgagctacaccaccaacggctaccccaccgagtacatccct
actgccttcgacaacttctccgcggtggtgtctgtggatgggcggcccgtgagactccaa
ctctgtgacactgccggacagacttttagaaccaacttcaaaacttttgaagaagaacca
tcttcaaaaactatgaaaaataagctgctgaaccagcgggtcttctatcacctgccagac
cctttcatgaaaaatgtgaaggtgatctttttactgatgagaattcatgaaaacataact
tttgggtactttgcttggttgcaggatgaatttgacaagctgaggcctctctgctacacc
aacacagacatcttcctgctctgcttcagtgtcgtgagcccctcatccttccagaacgtc
agtgagaaatgggtgccggagattcgatgccactgtcccaaagcccccatcatcctagtt
ggaacgcagtcggatctcagagaagatgtcaaagtcctcattgagttggacaaatgcaaa
gaaaagccagtgcctgaagaggcggctaagctgtgcgccgaggaaatcaaagccgcctcc
tacatcgagtgttcagccttgactcaaaaaaacctcaaagaggtctttgatgcagccatc
gtcgctggcattcaatactcggacactcagcaacagccaaagaagtctaaaagcaggact
ccagataaaatgaaaaacctctccaagtcctggtggaagaagtactgctgtttcgtatga

>gi568815597f:228635743_228843737|GENSCAN_predicted_peptide_10|116_aa
MDHNEAQRCICFSSGPDADGAPGLAGLLLGSRNTQHPVCVQWPRSVSNVAASSVQKWLQR
RCVSRRLGLSGMKVLSAHEGFAKLSLPDAMMTMNSSSVAWIQREDNDTVMYNVNKK

>gi568815597f:228635743_228843737|GENSCAN_predicted_CDS_10|351_bp
atggaccataatgaggcccagagatgtatctgcttctccagtggaccagatgctgacgga
gccccaggactggctggcttgctccttggttcccgcaatacccagcacccggtctgtgtg
cagtggcctcggtcagtgtctaatgtggctgcatcgagcgtccaaaagtggctgcagagg
aggtgtgtctctcggcgcttgggcctctctgggatgaaagttttaagtgcacacgaaggc
tttgccaagctctctcttcctgatgccatgatgactatgaacagcagctccgtggcctgg
atccagagggaggacaatgacaccgtgatgtataatgtgaacaagaaataa

>gi568815597f:228635743_228843737|GENSCAN_predicted_peptide_11|76_aa
MVAAAGRCGWSCTLHGAPQVLLQLPKPRLQTQASCSDSDKAAMATEVSGQKIDTPKILKH
HDRISYSCNVQCKLIN

>gi568815597f:228635743_228843737|GENSCAN_predicted_CDS_11|231_bp
atggtggctgcagcagggaggtgtggatggagctgcacactccatggagctccccaggtg
ctgctgcagctgcccaaaccacgactgcagacccaggcctcctgctctgactcagacaaa
gccgccatggccacagaggtttccggccagaaaattgacacccccaagatcctgaaacac
catgaccgtatctcttactcatgtaatgtccagtgtaagctgatcaactaa