GENSCAN 1.0 Date run: 4-Nov-116 Time: 07:42:13 Sequence gi568815597f:192247313_192466121 : 218809 bp : 34.62% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Term + 187 651 465 0 0 37 44 305 0.985 15.03 1.02 PlyA + 2130 2135 6 1.05 2.04 PlyA - 2288 2283 6 1.05 2.03 Term - 3873 3449 425 1 2 51 49 254 0.440 12.27 2.02 Intr - 26698 26662 37 1 1 76 93 63 0.013 2.52 2.01 Init - 34828 34472 357 1 0 85 93 81 0.582 5.45 2.00 Prom - 62446 62407 40 -3.75 3.00 Prom + 69010 69049 40 -4.65 3.01 Init + 76016 76071 56 1 2 65 99 44 0.262 4.01 3.02 Intr + 100016 100077 62 2 2 37 116 85 0.052 3.66 3.03 Intr + 103213 103377 165 2 0 74 18 107 0.661 1.31 3.04 Intr + 104735 104901 167 0 2 46 105 167 0.717 12.96 3.05 Intr + 118609 118761 153 0 0 97 59 105 0.473 7.85 3.06 Term + 135533 135679 147 1 0 38 44 86 0.019 -3.88 3.07 PlyA + 135869 135874 6 1.05 4.06 PlyA - 137021 137016 6 1.05 4.05 Term - 139629 139489 141 0 0 -14 47 213 0.639 3.95 4.04 Intr - 146852 146728 125 0 2 89 73 27 0.787 0.68 4.03 Intr - 148962 148770 193 0 1 27 38 153 0.005 2.34 4.02 Intr - 165134 164686 449 0 2 61 86 203 0.001 9.54 4.01 Init - 176451 176409 43 0 1 60 68 55 0.010 1.33 4.00 Prom - 190948 190909 40 -3.55 5.00 Prom + 195720 195759 40 -3.15 5.01 Init + 210507 210568 62 2 2 45 78 92 0.734 4.67 5.02 Term + 216354 216486 133 0 1 120 48 74 0.791 3.18 5.03 PlyA + 216747 216752 6 1.05 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Term - 33865 33623 243 1 0 48 36 189 0.919 4.62 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815597f:192247313_192466121|GENSCAN_predicted_peptide_1|154_aa GTVGSILDRKDETKTQAVVCQQLDLIHLKERNVEDLSGGELQRFACAVICIQKADIFMFD EASGYLDVKQRLKPAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTM PFSVREAINIFLDGYVPTENLRFRDASLVFKVVE >gi568815597f:192247313_192466121|GENSCAN_predicted_CDS_1|465_bp gggacagtgggatctattttggaccgaaaagatgaaacaaagacacaggcagttgtatgt cagcagcttgatttaatccacctgaaagaacgaaatgttgaagatctttcaggaggagag ttgcagagatttgcttgtgctgtcatttgcatacagaaagctgatattttcatgtttgat gaggcttctggttacctagatgtcaagcagcgtttaaagcctgctattactatacgatct ctaataaatccagatagatatatcattgtggtggaacatgatctaagtgtattagactat ctctccgacttcatctgctgtttatatggtgtaccaagcgcctatggagttgtcactatg ccttttagtgtaagagaagccataaacatttttttggatggctatgttccaacagaaaac ttgagattcagagatgcatcacttgtttttaaagtggttgagtga >gi568815597f:192247313_192466121|GENSCAN_predicted_peptide_2|272_aa MTSTCSSERKSHRPLTLNQKLEMIQLHEEGMLKAEIGQKLGLFCQTVSQVVNTKKRLLKD IESANPVNTQMIRKQNHLIADLEKVLVVWVNDQNRHTIPLTQNKALTFFNSLKAERGEKS SDSGDDGSRGEARVQNWTEDEMDELTEVGFRKWVIKNTTELKDHVLTQCKEAKNLDKRLK ELLTRIISLERNINDLKELKNTARELCEAYTIINSQIDQAKERISEFEDHLAEIRHADKI REKRMKRNEQSLQEIWDFVKKNKNKSIIHWST >gi568815597f:192247313_192466121|GENSCAN_predicted_CDS_2|819_bp atgacctctacatgttcaagtgaaaggaagagtcacaggcctctcactttaaatcaaaag ctagaaatgattcaacttcatgaggaaggcatgttgaaagctgagataggccaaaagcta ggcctcttctgccaaacagttagccaagttgtgaacacaaagaaaaggttattgaaagat attgaaagtgccaatccagtgaatacacaaatgataagaaagcaaaaccatcttattgct gatttggagaaagttttagtggtttgggtaaatgatcaaaacagacacaccattccctta acccaaaacaaagccctaactttcttcaattctctgaaggctgagaggggtgagaagtct agtgatagtggagatgatggaagtagaggagaagcaagggtgcagaactggacagaggat gagatggacgaattgacagaagtaggcttcagaaaatgggtaataaaaaacaccactgag ctaaaggaccatgttctaacccaatgcaaagaagctaagaaccttgataaaaggttaaag gagctgctaactagaataatcagtttagagaggaacataaatgacctaaaggagctgaaa aacacagcacgagaactttgtgaagcatacacaattatcaatagccaaatcgaccaagca aaagaaaggatatcagagtttgaagaccaccttgctgaaataaggcatgcagataagatt agagaaaaaagaatgaaaaggaatgaacaaagcctccaagaaatatgggactttgtaaaa aaaaacaaaaacaaatctataattcactggagtacctga >gi568815597f:192247313_192466121|GENSCAN_predicted_peptide_3|249_aa MNPVALWSMAFRKEREVARSPTAETMTWSENMDTLLANQGKEQLLGAHAKGASLAGGGEN HQRSGRQISLSGKSAGMFYSSEIYILKNRDSQRKAGLDAFRIFLKSEFSEENVEFWLACE DFKKTKNADKIASKAKMIYSEFIEADAPKEINIDFGTRDLISKNIAEPTLKCFDEAQKLI YCLMAKDSFPRFLKSEIYKKLKAAQKIGVCLAQLNGKLIYFRSPGSADNKREPSGSWENY RTCNTVDRS >gi568815597f:192247313_192466121|GENSCAN_predicted_CDS_3|750_bp atgaatcctgttgcattatggagtatggcctttagaaaggaaagagaagttgccaggtca ccaactgcggaaacaatgacatggtctgaaaatatggacacgcttttagccaaccaagga aaggagcagctgcttggagcacatgcaaagggggcctccctggcaggtggaggagaaaac caccaacgttctggaaggcaaatttctctgagtggaaaaagtgctggcatgttttactcc tcagagatatacattctcaaaaatagagacagccagcgaaaggctggtctagatgctttt cgaatatttctaaaatcagagtttagtgaagaaaatgttgagttctggcttgcctgtgaa gactttaagaaaacgaaaaatgcagacaaaattgcttccaaagccaagatgatttattct gaattcattgaagctgatgcacctaaagagattaacattgacttcggtaccagagacctc atctcaaagaatattgctgaaccaacactcaaatgctttgatgaggctcagaaattaatc tattgtctcatggccaaggattctttccctcgatttctgaagtcagagatttataaaaaa ctgaaagctgcccaaaagattggtgtctgtcttgcccaactcaatgggaaactcatttac tttagaagcccagggagcgctgacaacaaaagagagcctagtggctcatgggagaactac agaacttgtaatactgtggacagaagctga >gi568815597f:192247313_192466121|GENSCAN_predicted_peptide_4|316_aa MVIELLIRGNCEIRVLEVLARAIRQEKEIKGIQLGKEEVTLSLFADDMIVYLENPIVSAQ NLFKLISNFSKVSGYKIIVQKSQAFLYTNNRQTESQIVSELPFTIASKRIKYLGIQLTRD AKDLFKENYKPLLNEIKEDTNKWKNIPCSWIGRISIVKIAIMPKRMNSNSGASKEIKANA FPECPVMLNYNRIPIEMSVTSKWLPNEYVMLCDGSLNSKRVQNDDIPRECKLHESRAWLI LFTSVSVLPAMVMEHTRYSVHICWDEYISNWQTGPSVDIPEEGTVIMGDDSSMRLIAPED LLVEVEDKDMDDLDPA >gi568815597f:192247313_192466121|GENSCAN_predicted_CDS_4|951_bp atggtcattgaacttctaatccgtggaaactgtgaaataagagtgttggaagttctggcc agggcaatcaggcaggagaaagaaataaagggtattcaattaggaaaagaggaagtcaca ttgtccctgtttgcagatgacatgattgtatatctagaaaaccccatcgtctcagcccaa aatctctttaagctgataagcaatttcagcaaagtctcaggatacaaaatcattgtgcaa aaatcacaagcattcttatacaccaataacagacaaacagagagccaaatcgtgagtgaa ctcccattcacaattgcttcaaagagaataaaatacctaggaatccaacttacaagggat gcgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaagaggataca aacaaatggaagaacattccatgctcatggataggaagaatcagtatcgtgaaaattgcc ataatgcccaagaggatgaattctaacagtggggcaagtaaagaaattaaggctaacgct tttcctgagtgcccagtaatgttgaattacaatagaatacctatagaaatgagtgtgaca tccaagtggttaccaaatgaatatgttatgctctgtgatggttcactgaattctaaacga gttcagaatgatgacataccaagagaatgtaagctccatgaaagcagggcctggttgatc ttgttcacttctgtatctgttctacctgctatggtgatggaacatacaagatactcagta cacatttgttgggatgaatacatttctaattggcagacaggtccttcagtagatattcca gaagagggtactgttatcatgggagatgacagctccatgcgtcttattgccccagaagac cttctagtggaggtggaagacaaggatatggatgatcttgaccctgcatag >gi568815597f:192247313_192466121|GENSCAN_predicted_peptide_5|64_aa MNEKGSTDQQCKGESDGTPRRNYPKVTRGRTERGRTEKTTTPSVKLTKAHNPEWKYTKMS SEVQ >gi568815597f:192247313_192466121|GENSCAN_predicted_CDS_5|195_bp atgaacgagaaaggaagtacagaccagcaatgcaagggagaaagtgatggcaccccaagg agaaactatccaaaagtaacaaggggaagaacagaaaggggaagaacagaaaagaccact acaccttcagtaaaattaacaaaagctcataaccctgaatggaaatatacaaagatgagc tctgaagtacaatga