GENSCAN 1.0 Date run: 6-Nov-116 Time: 03:37:44 Sequence gi568815597f:110111500_110332306 : 220807 bp : 48.76% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Term + 992 1560 569 0 2 58 41 771 0.610 63.98 1.02 PlyA + 4372 4377 6 1.05 2.02 PlyA - 6584 6579 6 1.05 2.01 Sngl - 9171 8959 213 0 0 57 42 258 0.051 11.35 2.00 Prom - 25691 25652 40 -4.96 3.04 PlyA - 27057 27052 6 1.05 3.03 Term - 31656 31488 169 2 1 103 50 93 0.648 4.35 3.02 Intr - 39063 38882 182 0 2 69 47 131 0.586 5.77 3.01 Init - 39600 39517 84 0 0 56 -5 172 0.518 3.52 3.00 Prom - 40185 40146 40 -3.76 4.00 Prom + 53314 53353 40 -5.76 4.01 Init + 55431 55716 286 2 1 59 94 457 0.759 40.64 4.02 Intr + 60561 60718 158 1 2 145 73 242 0.935 28.13 4.03 Intr + 61693 61737 45 0 0 50 94 53 0.571 0.71 4.04 Intr + 62474 62651 178 1 1 94 -29 140 0.687 2.39 4.05 Intr + 63280 63461 182 2 2 81 113 249 0.999 26.29 4.06 Intr + 65130 65240 111 2 0 130 116 111 0.994 18.68 4.07 Intr + 73820 73927 108 1 0 49 93 47 0.036 1.78 4.08 Intr + 80473 80714 242 0 2 84 41 390 0.017 30.25 4.09 Intr + 81007 81199 193 1 1 97 86 301 0.999 30.29 4.10 Intr + 83080 83272 193 0 1 76 93 321 0.765 30.47 4.11 Intr + 84087 84246 160 1 1 63 63 229 0.996 16.95 4.12 Intr + 85938 86100 163 0 1 62 78 288 0.942 25.18 4.13 Term + 86577 86945 369 2 0 -8 47 693 0.935 50.25 4.14 PlyA + 90680 90685 6 1.05 5.00 Prom + 91810 91849 40 -9.06 5.01 Init + 96265 96459 195 0 0 68 66 63 0.218 1.03 5.02 Intr + 99950 100678 729 1 0 45 96 1414 0.396 129.53 5.03 Intr + 111465 112401 937 2 1 137 94 1809 0.994 177.16 5.04 Intr + 114476 114679 204 0 0 112 86 282 0.945 29.57 5.05 Term + 117034 117200 167 2 2 75 37 84 0.130 0.08 5.06 PlyA + 122505 122510 6 1.05 6.10 PlyA - 123188 123183 6 -1.95 6.09 Term - 124103 123932 172 1 1 106 34 98 0.044 3.50 6.08 Intr - 131521 131336 186 0 0 76 28 101 0.028 1.70 6.07 Intr - 145206 145122 85 1 1 92 79 51 0.108 3.48 6.06 Intr - 151458 151340 119 2 2 95 115 -14 0.186 2.11 6.05 Intr - 158785 158620 166 2 1 19 94 139 0.573 6.62 6.04 Intr - 159532 159322 211 1 1 97 61 79 0.697 4.59 6.03 Intr - 162154 162030 125 2 2 59 65 42 0.481 -0.70 6.02 Intr - 171351 171190 162 1 0 48 44 134 0.621 4.95 6.01 Init - 171801 171744 58 0 1 73 75 32 0.567 1.87 6.00 Prom - 184666 184627 40 -5.36 7.00 Prom + 189982 190021 40 -7.06 7.01 Init + 190198 190309 112 0 1 84 109 7 0.640 2.77 7.02 Intr + 195925 196168 244 2 1 97 85 56 0.301 2.76 7.03 Intr + 198688 198847 160 1 1 130 85 -5 0.483 3.39 7.04 Intr + 200291 200445 155 1 2 106 52 -1 0.185 -3.03 7.05 Intr + 202530 202717 188 0 2 90 32 92 0.301 3.13 7.06 Intr + 218442 218560 119 1 2 87 116 28 0.019 5.68 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815597f:110111500_110332306|GENSCAN_predicted_peptide_1|189_aa XQLPEHGSLLIPLSPMFLTVKLLLGQRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLF RGQLLEDDKHLSDYCIGPNASINVIMQPLEKMALKEAHQPQTQPLWHQLGLVLAKHFEPQ DAKAVLQLLRQEHEERLQKISLEHLEQLAQYLLAEEPHVEPAGERELEAKARPQSSCDME EKEEAAADQ >gi568815597f:110111500_110332306|GENSCAN_predicted_CDS_1|570_bp nggcagctcccagagcatggatccctcctgattccactcagcccgatgttcctcacagtc aagctgctcctgggccagagatgcagtctgaaggtgtcagggcaagagagtgtagccacg ctgaagagactggtgtccaggcggctgaaggtgcctgaggagcagcagcacctgcttttc cgtggccagctcctggaggatgacaagcacctctctgactactgcattgggcccaatgcc tctatcaatgtcatcatgcagcccttggagaagatggcgctaaaggaggcccaccagccg cagacccagcccctgtggcaccagctgggactggtcctagctaaacactttgaaccacag gatgccaaggccgtgctgcagctgctaaggcaggagcacgaggagcgcctgcagaagata agcctggagcacctggagcagctggcccagtacctcctggcagaggagcctcacgtggag ccagctggagagagggagcttgaggcgaaggcacggcctcagagctcctgtgacatggag gagaaggaggaggcagcagctgatcagtaa >gi568815597f:110111500_110332306|GENSCAN_predicted_peptide_2|70_aa MMLMVMVVVVMATVMVLVVRVVPVMVLVATVMVMVVVVMVMVVVVMVVVCGDGGGGGGDG GGGGDGGDGV >gi568815597f:110111500_110332306|GENSCAN_predicted_CDS_2|213_bp atgatgctgatggtaatggtggtggtggtgatggcgacggtgatggtgttggtggtgagg gtggtgccggtgatggtgttggtggcgacagtgatggtgatggtggtggtggtgatggtg atggtggtggtagtgatggtggtagtgtgtggtgatggtggtggcggtggtggtgatggt ggtggtggtggtgatggtggtgatggtgtttaa >gi568815597f:110111500_110332306|GENSCAN_predicted_peptide_3|144_aa MREGERAPGLRRQATAAGAARGARDERRRRLCGAERSWAERCAHCSLAFRKATLAAGRRD AGLTHARAGVNARLSGSERGSDGRRRRRGQWSGFQVQQVIFGGNLLSVRYCAKFSQLLAE SRGKVLQSAKDNLEDVKELNNFPL >gi568815597f:110111500_110332306|GENSCAN_predicted_CDS_3|435_bp atgcgcgaaggagagcgggccccggggctccgtcgccaggcaacggcggctggagcggcg agaggagcccgggacgagcgcaggcgccggctctgcggagcagaacggagctgggcggag cgctgcgcgcactgttccctcgctttccgaaaggccaccctggcggcggggcgccgtgac gcaggcttgactcacgcgcgggccggcgtcaatgcgaggctctcgggcagcgagcgaggc tctgatggccgacgtaggcggagagggcagtggtctgggtttcaagtccagcaagtcata tttgggggaaatctactgtccgtcaggtactgtgctaagttcagccagctcctggcagaa tccagaggaaaggttttacagtcagccaaggacaacttggaagatgtcaaggagctaaac aactttcctctgtag >gi568815597f:110111500_110332306|GENSCAN_predicted_peptide_4|795_aa MPKNSKVTQREHSSEHVTESVADLLALEEPVDYKQSVLNVAGEAGGKQKAVEEELDAEDR PAWNSKLQYILAQIGFSVGLGNIWRFPYLCQKNGGGAYLVPYLVLLIIIGIPLFFLELAV GQRIRRGSIGVWHYICPRLGGIGFSSCIKGLLYEQLLLHTCAQVCLFVGLYYNVIIGWSI FYFFKSFQYPLPWSECPVVRNGSVAGKYGAQLGMPASPVPGRVVEAECEKSSATTYFWYR EALDISDSISESGGLNWKMTLCLLVAWSIVGMAVVKGIQSSGKVMYFSSLFPYVVLACFL VRGLLLRGAVDGILHMFTPKVTLFLGSGSPVLQCHLVLRGPGWLHTSRCTAVLRSKLDKM LDPQVWREAATQVFFALGLGFGGVIAFSSYNKQDNNCHFDAALVSFINFFTSVLATLVVF AVLGFKANIMNEKCVVENAEKILGYLNTNVLSRDLIPPHVNFSHLTTKDYMEMYNVIMTV KEDQFSALGLDPCLLEDELDKSVQGTGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLG SMIGTMAGITTPIIDTFKVPKEMFTVGCCVFAFLVGLLFVQRSGNYFVTMFDDYSATLPL TLIVILENIAVAWIYGTKKFMQELTEMLGFRPYRFYFYMWKFVSPLCMAVLTTASIIQLG VTPPGYSAWIKEEAAERYLYFPNWAMALLITLIVVATLPIPVVFVLRHFHLLSDGSNTLS VSYKKGRMMKDISNLEENDETRFILSKVPSEAPSPMPTHRSYLGPGSTSPLETSGNPNGR YGSGYLLASTPESEL >gi568815597f:110111500_110332306|GENSCAN_predicted_CDS_4|2388_bp atgccgaagaacagcaaagtgacccagcgtgagcacagcagtgagcatgtcactgagtcc gtggccgacctgctggccctcgaggagcctgtggactataagcagagtgtactgaatgtg gctggtgaggcaggcggcaagcagaaggcggtggaggaggagctggatgcagaggaccgg ccggcctggaacagtaagctgcagtacatcctggcccagattggcttctctgtgggcctc ggcaacatctggaggttcccctacctgtgccagaaaaatggaggaggtgcttacctggtg ccctacctggtgctgctgatcatcatcgggatccccctcttcttcctggagctggctgtg ggtcagaggatccgccgcggcagcatcggtgtgtggcactatatatgtccccgcctgggg ggcatcggcttctccagctgcataaagggtctgctctatgagcagctgctcctgcacaca tgtgctcaggtctgtctctttgtggggctgtattataatgtgatcatcgggtggagcatc ttctatttcttcaagtccttccagtacccgctgccctggagtgaatgtcctgtcgtcagg aatgggagcgtggcaggcaagtatggggcccagctggggatgccagccagccctgtccca ggaagggtggtggaggcagagtgtgaaaagagctcagccactacctacttctggtaccga gaggccttggacatctctgactccatctcggagagtgggggcctcaactggaagatgacc ctgtgcctcctcgtggcctggagcatcgtggggatggctgtcgttaagggcatccagtcc tcggggaaggtgatgtatttcagctccctcttcccctacgtggtgctggcctgcttcctg gtccgggggctgttgctgcgaggggcagttgatggcatcctacacatgttcactcccaag gtgacactgttcttgggcagcgggagcccagtgctccagtgccatctggtgcttcgtggc cccggctggctccacaccagcaggtgcacagcagtgctgagaagcaagctggacaagatg ctggacccccaggtgtggcgggaggcagctacccaggtcttctttgccttgggcctgggc tttggtggtgtcattgccttctccagctacaataagcaggacaacaactgccacttcgat gccgccctggtgtccttcatcaacttcttcacgtcagtgttggccaccctcgtggtgttt gctgtgctgggcttcaaggccaacatcatgaatgagaagtgtgtggtcgagaatgctgag aaaatcctagggtaccttaacaccaacgtcctgagccgggacctcatcccaccccacgtc aacttctcccacctgaccacaaaggactacatggagatgtacaatgtcatcatgaccgtg aaggaggaccagttctcagccctgggccttgacccctgccttctggaggacgagctggac aagtccgtgcagggcacaggcctggccttcatcgccttcactgaggccatgacgcacttc cccgcctccccgttctggtccgtcatgttcttcttgatgcttatcaacctgggcctgggc agcatgatcgggaccatggcaggcatcaccacgcccatcatcgacaccttcaaggtgccc aaggagatgttcacagtgggctgctgtgtctttgcattcctcgtggggctgttgttcgtc cagcgctccggaaactactttgtcaccatgttcgatgactactcggccaccctgccactc actctcatcgtcatccttgagaacatcgctgtggcctggatttatggaaccaagaagttc atgcaggagctgacggagatgctgggcttccgcccctaccgcttctatttctacatgtgg aagttcgtgtctccactatgcatggctgtgctcaccacagccagcatcatccagctgggg gtcacgcccccgggctacagcgcctggatcaaggaggaggctgccgagcgctacctgtat ttccccaactgggccatggcactcctgatcaccctcatcgtcgtggcgacgctgcccatc cctgtggtgttcgtcctgcggcacttccacctgctctctgatggctccaacaccctctcc gtgtcctacaagaagggccgcatgatgaaggacatctccaacctggaggagaacgatgag acccgcttcatcctcagcaaggtgcccagtgaggcaccttcccccatgcccactcaccgt tcctatctggggcccggcagcacatcacccctggagaccagcggtaaccccaatggacgc tatgggagcggctacctgctggccagcacccctgagtcggagctgtga >gi568815597f:110111500_110332306|GENSCAN_predicted_peptide_5|743_aa MKKGGSRQSPNGRVRLEDVPEVLESTGSPESAATPSAHITAPRAQGEVWSQDVLAPPEGS TLTSMGVWRAAAAPSRSPAALLMISSVCVSSYRGRKSGNKPPSKTCLKEEMAKGEASEKI IINVGGTRHETYRSTLRTLPGTRLAWLADPDGGGRPETDGGGVGSSGSSGGGGCEFFFDR HPGVFAYVLNYYRTGKLHCPADVCGPLFEEELTFWGIDETDVEPCCWMTYRQHRDAEEAL DIFESPDGGGSGAGPSDEAGDDERELALQRLGPHEGGAGHGAGSGGCRGWQPRMWALFED PYSSRAARVVAFASLFFILVSITTFCLETHEAFNIDRNVTEILRVGNITSVHFRREVETE PILTYIEGVCVLWFTLEFLVRIVCCPDTLDFVKNLLNIIDFVAILPFYLEVGLSGLSSKA ARDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATM IYYAERIGARPSDPRGNDHTDFKNIPIGFWWAVVTMTTLGYGDMYPKTWSGMLVGALCAL AGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKRKKHVPRPAQLESPMYCKSEETSPRDS TCSDTSPPAREEGMIERKRADSKQNGDANAVLSDEEGAGLTQPLASSPTPEERRALRRST TRDRNKKAAACFLLSTGDYACADGSVRKGCGKSRSLNNIVGAAGTSLGLSPLASRYSLPY PLKKFLLTPFHPLTGPPPGHSAP >gi568815597f:110111500_110332306|GENSCAN_predicted_CDS_5|2232_bp atgaagaagggagggagtaggcagagtcccaatggcagagttaggctagaagatgtacct gaggtcctggaatcaacaggaagcccagaatcagctgccaccccatctgcccacatcaca gcccccagagctcagggcgaggtctggagccaggatgttctagcaccaccagagggcagc accctcacatccatgggtgtttggagggcagcggccgccccaagccggagccccgcagcg cttcttatgatcagctcggtgtgtgtctcctcctaccgcgggcgcaagtcggggaacaag cctccgtccaaaacatgtctgaaggaggagatggccaagggcgaggcgtcggagaagatc atcatcaacgtgggcggcacgcgacatgagacctaccgcagcaccctgcgcaccctaccg ggaacccgcctcgcctggctggccgaccccgacggcgggggccggcccgagaccgatggc ggcggtgtgggtagcagcggcagcagcggcggcgggggctgcgagttcttcttcgacagg cacccgggcgtcttcgcctacgtgctcaactactaccgcaccggcaagctgcactgcccc gcggacgtgtgcgggccgctcttcgaagaggagctcaccttctggggcatcgacgagacc gacgtggaaccctgctgctggatgacctaccggcagcaccgcgacgccgaggaggcgctc gacatcttcgagagcccggacggaggcggcagcggcgcggggcccagcgacgaggccggc gacgatgagcgggagctggccctgcagcgactgggcccccacgagggaggcgcgggccat ggcgccgggtctgggggctgccgcggctggcagccccgcatgtgggcgctcttcgaggat ccctactcctcccgggccgctagggtagtggcctttgcctctctcttcttcatcctggtc tccatcaccactttctgcctggagacccatgaggcctttaatatcgaccgcaacgtgaca gagatcctccgcgtagggaacatcaccagcgtgcacttccggcgggaggtagagacagag cccatcctgacctacatcgagggcgtatgtgtgctgtggttcacactggagttcctggtg cgcatcgtgtgctgccccgacacgctggacttcgtcaagaacctgctcaacatcatcgac tttgtggccatcctgcccttctacctggaggtggggctgagcggcctgtcatccaaggcg gcccgcgacgtgctgggcttcctgcgcgtggtgcgcttcgtgcgcatcctgcgtatcttc aagctcacacgccacttcgtggggctacgcgtgctgggccacaccctgagggccagcacc aatgagttcctgctgcttatcatcttcctggccctgggtgtgctcatctttgccaccatg atctactacgctgagcgcattggggccaggccctccgaccctcggggtaatgaccacacc gacttcaagaacatccccattggcttctggtgggctgtggtcaccatgacgacactgggc tacggagacatgtaccccaagacgtggtcaggcatgctggtaggggcactgtgtgcactg gctggcgtgctcaccatcgccatgccggtgcctgtcatcgtcaacaacttcggcatgtac tactccctggccatggccaagcagaagctgcccaagaaacggaagaagcacgtgccacgg ccggcgcagctggagtcacccatgtactgcaagtctgaggagacttccccccgggacagc acctgcagtgataccagcccccctgcccgggaagagggtatgatcgagaggaaacgggca gactctaagcagaatggcgatgccaacgcagtgctgtctgatgaggagggagctggcctc acccaacccctggcctcctccccgacccccgaggagcgccgggccctgcgacgctccacc actcgagacagaaacaagaaggcagctgcctgcttcctgctcagcactggggactatgcc tgcgccgatggtagtgtccggaaaggctgtggaaagtcccggagtctaaacaacatagtt ggagcagctggaaccagcctggggctgtctccactggcatcgcgttacagcttgccctac cctctgaaaaagttcctgctcacccccttccaccccctcaccggcccaccccctggtcac tctgccccttag >gi568815597f:110111500_110332306|GENSCAN_predicted_peptide_6|427_aa MHVETDPQCGGVGKWGPVTVFYWTQVHQSLRDLVTVSQWFLNLNNYEHAYKSNVWNCKAK QGPSPGPQQPFEEASHCDQEHIVPRFAGEGQGGHQWAGRSNTVQIHSPNLVANSLNCHPQ DPSIGFQAFLKRSFKRVPFSPPGSKSTEELIFHINRLLQCPGMCTSELRPPQSQSAGAEK CNATEAYFQRNEANAAGNIQTERTQRGESEGGMTSTRGEDRGRSGTAHDQGKPVGRQCFS RAILGDGVTRSLTTDAQGLTGGKDRTSSSRQMLIISPDCADLSFFHYNHCDRAWSEQGLR RLWTFMSETPCLERLSHLPKVTQLTSGKASGARISNLAVDQKSMAVVVLVPRGWPQSQCR SMVKIACEIYLSLKRSLGTPVATPSVPSGPLWHLVPLLLAGFSAPDHEMVPHRSTEKTAT LAVGPDA >gi568815597f:110111500_110332306|GENSCAN_predicted_CDS_6|1284_bp atgcatgttgaaactgatccccaatgtggcggtgttgggaagtggggcccggtgacagtt ttttactggactcaggttcatcagtctcttagggatttagtgactgtaagtcaatggttc ttgaacctgaacaactacgagcatgcttataaatccaatgtctggaactgcaaagccaag caagggccatcccctggtccacagcaacccttcgaagaagcctcccactgtgaccaggag cacatagttccacgatttgctggagagggccagggtggccatcagtgggcagggaggagc aacacagttcaaatccacagcccaaacctggtagccaattctctgaactgtcatcctcag gatccttccattggcttccaagccttcctgaaaagatctttcaagagggttccattcagc cccccagggtctaaatctactgaagagctgatcttccacatcaatagactcctccaatgt cctggaatgtgtacctctgaattgaggccaccgcagagccagtctgcaggggctgaaaaa tgcaatgcaactgaggcttatttccagaggaatgaggccaatgcagcaggcaacatccaa acagaaaggacccagagaggagagtctgagggcggcatgacttcaacaaggggtgaggac agaggtagatcaggaactgctcatgaccaagggaagccagttggacgtcagtgtttttcc agggctatcctaggtgatggggttacgcggagtctcaccacagatgctcaaggcttgaca ggcgggaaagacaggacgtcctcatcacgacaaatgcttattatcagtcctgactgtgca gacttgtctttcttccactacaaccactgtgaccgggcctggagcgagcaaggcctccgt cgcctctggacttttatgagtgagacaccatgcttagaaaggttaagtcatttgcccaag gtcacgcagctcacaagtggcaaagccagtggagccagaattagcaatctggccgtggac cagaaatcgatggcagtggtggtgctggtgccaaggggctggccacagagccagtgtaga agcatggtcaaaatcgcctgtgaaatctatctcagcctgaaacggtcactggggacccca gttgccaccccttcagtcccctcaggaccactctggcatctagtacccctgctgctggct gggttctcagcccctgaccatgaaatggttccacatcgatctacagaaaaaacagccact ttggccgtgggccctgatgcgtaa >gi568815597f:110111500_110332306|GENSCAN_predicted_peptide_7|326_aa MAMLVLPSIVSLGDLRDGTVAQKDHKTLMVTSLMVKTDRSPCVSKFGFKFQRLDLMHRKT LLDLPKRHRTEGLPRTVSGNFPLSHPRDERGGSLLRLCPWVWGSFRFHYSVMPAGWGLRA SFYQYFPPHMESILTQAFQEETSPGPLTSVSFQSFIISQVAEVVDFKARPQNTSRGHASL HTLRIFLQQDSMGAREAWGEVAPRALPRTAFLQVEFTLPRLTAWVSTFKIQDTNQCNSAQ ELTLNHITMALHACLSLYIHPSLFLSLPLIYRTNDTVEKVKEEFPSGYKVALGIDFIDMS LVYSGRNSTSIIKNLIANWNKANFLK >gi568815597f:110111500_110332306|GENSCAN_predicted_CDS_7|978_bp atggcaatgctagtcttaccatccattgtgagcctgggagatttgcgtgatgggacagtt gcccagaaggatcacaaaacattaatggtgacctctctgatggtgaagacagatagaagc ccctgtgtcagcaaatttggattcaagtttcagagactagatttgatgcacagaaagacg ctgcttgatttaccaaagaggcacaggacagaaggccttcctcggactgtctctggcaat ttcccgctgtcccaccctagggatgaaaggggcggtagtctcctcagactgtgtccatgg gtctgggggtccttccgcttccactactctgtgatgcctgctgggtggggtcttcgagcc tccttctatcaatactttccccctcacatggaatccatcctcacacaggcctttcaggag gaaacttcccctgggcccctgaccagtgtttcttttcagagcttcatcatttcccaggtg gctgaggttgtagatttcaaagcaaggccacagaacacttcaagaggccacgcgagcctt catacactgcgcatctttctgcagcaggactctatgggggccagagaagcctggggagag gtggctccacgtgctttacccagaacagcattccttcaggttgagttcaccctgcccaga ctgacagcatgggttagtacattcaaaatccaggacactaaccagtgcaattcagctcaa gaactaacacttaaccacatcaccatggctctccatgcttgcctaagtttatacatacat ccatctttgtttctctccttgcctctcatttatcggaccaatgatactgtggagaaagtt aaagaagagttccccagtggatataaggtagcattaggcattgattttattgacatgtct ctcgtctactctggaagaaattcaacttctataattaaaaacttgatagctaactggaat aaagcgaattttcttaag