GENSCAN 1.0	Date run:  6-Nov-116	Time: 03:40:13

Sequence gi568815596r:24847619_25071904 : 224286 bp : 46.74% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +   4906   5332  427  1  1  126   51   171 0.748  11.98
 1.02 PlyA +   7438   7443    6                               1.05

 2.00 Prom +  10998  11037   40                              -3.26
 2.01 Init +  13101  13167   67  2  1   91   82    16 0.443   2.55
 2.02 Term +  16826  17031  206  0  2   53   43   132 0.577   2.73
 2.03 PlyA +  17366  17371    6                               1.05

 3.09 PlyA -  17393  17388    6                               1.05
 3.08 Term -  18287  18234   54  2  0   90   36    35 0.027  -3.94
 3.07 Intr -  25101  24952  150  0  0   78   94   374 0.461  37.36
 3.06 Intr -  30398  30304   95  0  2   84   97    66 0.369   6.78
 3.05 Intr -  39163  39004  160  1  1  126  -32   167 0.126   8.06
 3.04 Intr -  39832  39766   67  0  1   51   89    35 0.587  -1.19
 3.03 Intr -  40167  40027  141  2  0   72   85    25 0.310   0.07
 3.02 Intr -  40389  40284  106  1  1   72   60    21 0.536  -3.03
 3.01 Init -  43066  43030   37  1  1   78   99    82 0.683   8.47
 3.00 Prom -  43579  43540   40                              -6.16

 4.00 Prom +  44273  44312   40                              -2.36
 4.01 Init +  45233  45281   49  1  1   86   -3    31 0.166  -7.09
 4.02 Intr +  50565  50853  289  1  1   80   84   179 0.670  13.00
 4.03 Term +  51502  51514   13  1  1  126   48     0 0.553  -2.53
 4.04 PlyA +  51722  51727    6                               1.05

 5.06 PlyA -  52268  52263    6                               1.05
 5.05 Term -  55905  55673  233  1  2   33   42   140 0.595   0.54
 5.04 Intr -  58395  58229  167  2  2   75   98    87 0.941   8.00
 5.03 Intr -  67511  67420   92  2  2   52   81    75 0.866   1.99
 5.02 Intr -  68722  68666   57  1  0   94   86    22 0.749   1.68
 5.01 Init -  71369  70695  675  2  0   77  105  1064 0.994 102.17
 5.00 Prom -  74175  74136   40                              -8.16

 6.05 PlyA -  74268  74263    6                               1.05
 6.04 Term -  75722  75591  132  2  0   92   47    51 0.421  -0.51
 6.03 Intr -  78767  78684   84  2  0   63   78    85 0.573   5.02
 6.02 Intr -  80539  80487   53  2  2   73   60    36 0.219  -2.07
 6.01 Init -  81771  81705   67  0  1   86  105    45 0.573   7.23
 6.00 Prom -  91659  91620   40                              -2.06

 7.08 PlyA -  93397  93392    6                               1.05
 7.07 Term - 100130  99998  133  1  1   96   43   189 0.952  12.76
 7.06 Intr - 103936 103776  161  1  2   71  121   104 0.996  10.79
 7.05 Intr - 109547 109425  123  2  0  103  115    91 0.999  14.08
 7.04 Intr - 110356 110192  165  1  0   50   86   129 0.778   9.06
 7.03 Intr - 115856 115787   70  1  1   37   94    36 0.921  -1.72
 7.02 Intr - 119675 119593   83  2  2   85  106    83 0.968   8.24
 7.01 Init - 124274 124200   75  2  0  114   87   127 0.673  16.29
 7.00 Prom - 130631 130592   40                              -1.06

 8.00 Prom + 138344 138383   40                              -7.26
 8.01 Init + 140871 141264  394  2  1   46  108   123 0.640   7.00
 8.02 Intr + 142479 142606  128  1  2   65    2    88 0.047  -1.70
 8.03 Term + 153797 153976  180  1  0   68   52   106 0.096   2.61
 8.04 PlyA + 156280 156285    6                               1.05

 9.00 Prom + 176123 176162   40                              -3.36
 9.01 Init + 179866 179899   34  0  1   83   80    34 0.030   2.14
 9.02 Intr + 184528 184773  246  2  0   75   85    92 0.036   5.03
 9.03 Intr + 187655 187766  112  0  1   88   80    65 0.072   5.14
 9.04 Term + 196183 196213   31  1  1  125   48    56 0.181   2.63
 9.05 PlyA + 199488 199493    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:24847619_25071904|GENSCAN_predicted_peptide_1|142_aa
XLRRGGAHVAKPGLRAGMSGHRVLRKYSTGLSVRGLMPGQPRTSTEACCSPTPPADACLP
LHGQEPLPEDPSCQRPRKLGLPSSLPHRVAEPVLGVQPWFSRAHPQDFRLPYPECGWWGC
GLSITRAHQGGEATDREAHLCT

>gi568815596r:24847619_25071904|GENSCAN_predicted_CDS_1|429_bp
nngctgaggagaggaggggcccacgtggcaaagcccggcctcagagcaggcatgagtggc
caccgtgtactcagaaagtactcaactgggctgagcgtgagaggcctgatgccaggacag
ccccggacctcgacagaggcctgctgctccccaacacccccagcagacgcctgcctgcct
ctccacggccaggagccgctgcccgaggacccgagctgccaacgcccgcggaaacttggg
ttgccctcgtcactgccacacagagtggccgagccggtgctgggagtgcagccctggttc
agccgagcccatccccaggacttcaggctgccctacccagagtgtggctggtggggctgt
ggactcagcatcacccgtgctcatcagggtggggaagccacggaccgtgaggcacacctg
tgcacctga

>gi568815596r:24847619_25071904|GENSCAN_predicted_peptide_2|90_aa
MAGCPPIWELTVIRRLVIFITEAAPFPIAKPQKTPKCPNEQTKRGVYMQGDISLNGKEML
ICPTTQKNLEDIMLSEISQSKRDKYMIPLI

>gi568815596r:24847619_25071904|GENSCAN_predicted_CDS_2|273_bp
atggctggctgcccacccatctgggagttgactgtcattaggaggctggtcatcttcata
acagaagcagcaccattcccaatagcaaagccgcagaaaacacccaaatgtccaaatgaa
caaacaaaacgtggtgtatacatgcaaggagatatcagccttaacgggaaagaaatgctg
atctgcccgacgacacagaagaaccttgaagacatcatgctaagtgaaataagccagtca
aaaagggacaaatacatgattccgcttatataa

>gi568815596r:24847619_25071904|GENSCAN_predicted_peptide_3|269_aa
MREDTNDQYRDAGDENDLDSLKQTQKAGELGINSGVTLGIYNMPNNNRGGSEFKVWQLPR
PRPMMEMKFHSSLSLELHSSPPCFPAPSVGLTERRCSGWPGLRGKGAVELAGGRLERGRL
IRVSESSESVGIARNQLQFLRRVELLRCWELDDEWRELAWQRSSHPSRGGEPDRAVQSKG
DHGARRGDFGGVQSRLLNLMGLILANVFLYLCAIAVGIMSYYMADRKHRKAFLEARQSLE
VKMNLEEQSQQQPLDPGRKGKVVECIGLT

>gi568815596r:24847619_25071904|GENSCAN_predicted_CDS_3|810_bp
atgagggaggacacaaatgaccagtaccgggatgcaggtgatgaaaatgaccttgactca
ctcaagcagactcagaaagctggagaattgggaataaattcaggagtaaccttgggaatt
tataatatgcctaacaataataggggaggcagcgagtttaaagtgtggcaacttccaagg
cccaggcccatgatggagatgaaattccactccagcctgagtttggagctgcattcttca
ccgccatgctttcctgccccgagtgttggcctcaccgagaggaggtgcagtggctggcct
ggtctccgagggaaaggagccgtggagctcgcaggtggaaggctagagagaggcaggctc
atccgagtgagtgagagcagtgagtccgtgggcatcgcccggaaccagctccagtttcta
aggagagtagagcttttgcgctgctgggagctggatgatgagtggcgagaactggcctgg
cagcgcagctcacacccatctcggggcggggagcctgatcgtgctgtgcagtctaaaggg
gaccacggggcaagaagaggtgactttggtggtgtccagagcaggcttctcaacctcatg
ggtttgatcctggccaacgtcttcctctacctgtgcgccatcgctgtgggcatcatgtcc
tactacatggctgaccgcaagcaccgcaaggccttcctggaggcccgccagtcgctggag
gtgaagatgaacctggaagagcagagccagcagcagcctctcgaccctggtcgcaaggga
aaagtggtggagtgcattgggctcacttaa

>gi568815596r:24847619_25071904|GENSCAN_predicted_peptide_4|116_aa
MGFCHVGQAGLELPASRSKSNVPFTAQLSTPPPEGLFSPLSQFVRHRGPRGGSRTAFPSP
WGEPHPRTEKKGREWTYCLRDGSRDTDCVGMHLCRAVLGERGFVYFTQCFMKGQSH

>gi568815596r:24847619_25071904|GENSCAN_predicted_CDS_4|351_bp
atggggttttgccatgttggccaggctggtctcgaactcccggcctcaagatcgaaatcc
aacgtgcccttcacggcccagctcagtactcctcctcctgaggggcttttctctccactc
tcccagttcgtgcgccacagaggcccccggggaggctcgaggaccgcctttccatcaccg
tggggtgagccccaccctcgcaccgagaagaaaggaagggagtggacctactgtctgcgg
gatgggagtcgggacactgactgtgtgggaatgcacctatgcagggctgtcctcggggag
aggggcttcgtgtacttcacacagtgcttcatgaaggggcagagccactag

>gi568815596r:24847619_25071904|GENSCAN_predicted_peptide_5|407_aa
MPRNQGFSEPEYSAEYSAEYSVSLPSDPDRGVGRTHEISVRNSGSCLCLPRFMRLTFVPE
SLENLYQTYFKRQRHETLLVLVVFAALFDCYVVVMCAVVFSSDKLASLAVAGIGLVLDII
LFVLCKKGLLPDRVTRRVLPYVLWLLITAQIFSYLGLNFARAHAASDTVGWQVFFVFSFF
ITLPLSLSPIVIISVVSCVVHTLVLGVTVAQQQQEELKGMQLLREVDKELILRLLELPGK
RTEKHEEALPVSKVFFLCSPYPPMPMRSSVGKDRRPAGLHNYGVVKGPCESWSTLTPGGF
LLWTLGQSTGVTVIRLEPPGAPPLTNCEIWEKKVEEEQRVKKAPRLPPGSADPAGLRAKT
SRSKCKSEVVFSEEIETDGCGSGYMTVCQNIELYTKKGNCTVHEKGE

>gi568815596r:24847619_25071904|GENSCAN_predicted_CDS_5|1224_bp
atgccgaggaaccagggcttctccgagcccgaatactcggccgagtactcagccgagtac
tccgtcagcctgccctccgaccctgaccgcggggtgggccggacccatgaaatctcggtc
cggaactcgggctcctgcctgtgcctgcctcgcttcatgcggctgactttcgtgccggag
tccttggagaacctctaccagacctacttcaaaaggcagcgccacgagaccctgctggtg
ctggtggtctttgcagccctctttgactgctacgtggtggtcatgtgtgctgtggtcttc
tccagcgacaagctggcttccctcgccgtggctggaattggactggtgttggacatcatc
ctcttcgtgctctgcaaaaaggggctgctcccggaccgggtcacccgcagagtgctgccc
tacgtgctgtggctgctcataaccgcccagatcttctcctacctgggcctgaacttcgcg
cgtgcccacgcggctagtgacacggtgggctggcaggtcttctttgtcttctccttcttc
atcacgctgcccctcagcctcagccccatcgtgatcatctccgtggtctcctgtgtggtg
cacacgttggtcctgggggtcaccgtggcccagcagcagcaggaggagctcaaggggatg
cagctgctgcgggaggtggacaaggagcttattttgaggctcctggagcttccagggaaa
aggactgagaagcatgaagaagcattgccagtgtcaaaagtcttcttcctctgcagccct
tatccccccatgcccatgcgcagctctgtggggaaggacagaagacctgctggccttcac
aattacggcgtagtgaagggaccttgtgagtcttggtcgaccctcaccccgggtggcttt
ctgctttggactctgggtcaaagcactggcgtcacagtcattcgacttgaaccaccagga
gctcccccacttaccaactgtgagatctgggaaaagaaagtggaggaggaacagagggtg
aagaaggcgcccaggctccccccgggaagcgcagacccggctggtctcagggccaagact
tccagatccaaatgcaagtcagaagtcgtcttctctgaggagatcgagacagacggttgt
ggaagtggttacatgactgtgtgtcagaacatagaactgtacaccaaaaaagggaattgt
actgtacatgaaaaaggggaataa

>gi568815596r:24847619_25071904|GENSCAN_predicted_peptide_6|111_aa
MARTGETWTLRGEQGEGALNDQAFLEQGIWPVAAEGNLEGGPRNSTRGQPAEPTSCVDGT
DRGEEREEDVKQLSCPGIFTQMLLAPRESSQGPTAVPLRFPYPQGKAVPEP

>gi568815596r:24847619_25071904|GENSCAN_predicted_CDS_6|336_bp
atggcaagaactggggagacctggacactgagaggggaacaaggagagggtgccctaaat
gaccaagccttcctggaacaagggatctggcctgttgcagctgagggtaacttggaaggg
gggcctagaaacagcacccgagggcagccagcagagcccacgtcctgtgtggatggcacc
gatcgaggagaggagagggaagaggatgtcaagcagctctcttgcccaggaatattcacc
cagatgcttctggctccccgggagtcctcgcaagggcctactgctgtcccactgcgtttc
ccatatccacagggaaaggccgtgccagaaccctga

>gi568815596r:24847619_25071904|GENSCAN_predicted_peptide_7|269_aa
MPKRKEPGRSLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDRE
IKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNM
ENIIFVVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQTFYISIVD
LCENGGKRPTTNSSASFTKEQADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLL
HPDKCVAPGSEDAFKAVVNARTALLKNIK

>gi568815596r:24847619_25071904|GENSCAN_predicted_CDS_7|810_bp
atgccgaagcggaaggagcccggcaggtctctccgcatcaaagtcatctccatgggcaac
gccgaagtggggaaaagctgtattataaagcgatactgtgagaaaagattcgtgtctaaa
tacctggcaacaattggaattgactatggagtcacaaaggtacacgtcagagacagagaa
atcaaagttaacatctttgatatggctggacatcccttcttctatgaggttcgaaatgag
ttttacaaggacacacagggtgtgatactggtctatgatgttgggcagaaagactccttt
gacgcccttgatgcgtggctggcagaaatgaagcaagagcttggacctcatggaaacatg
gaaaatattatatttgtagtttgtgccaacaagattgattgtaccaaacatcgctgtgta
gatgaaagtgaaggacgtctttgggctgaaagcaaagggttcctgtactttgaaacttca
gcacaaactggagaaggcattaatgagatgttccagaccttttatatatccatagttgat
ttatgtgaaaatggcgggaaacgccctaccaccaatagcagtgctagtttcaccaaagaa
caagcagatgccattcgcagaattcgaaatagtaaagacagttgggacatgctgggagtc
aaacctggggcctcaagggatgaagtcaataaagcgtatcggaaacttgctgtgcttctt
caccctgacaaatgtgtagcacctggcagtgaagatgccttcaaagcagttgtgaatgct
cggacagccctcctgaaaaacatcaagtag

>gi568815596r:24847619_25071904|GENSCAN_predicted_peptide_8|233_aa
MQAALPLGPYDPVDPMVLEVSVADKDAVWSLWQACIGELQWRPLGFWSKALPSSADKYSP
FERRLLACYWSLVETEHLTMDRQVTMQPELPIINWVLSDPSSHKVGYAQQHSIIKWKWYI
WDQAQAGPEGATRIHGSRNQGVEVEVVPLTITPSDPLAKFLLPVAVTLRSAGLESPCENR
DTCPVEKGDAKAENARKDMASLNCGTCSCSCGVDHGNRFEERSSVLLHLPSLF

>gi568815596r:24847619_25071904|GENSCAN_predicted_CDS_8|702_bp
atgcaagctgctctgccacttgggccatatgacccagtggatccaatggtgcttgaggtg
tcagtggcagataaggatgctgtttggagtctttggcaggcctgcatcggtgaattacag
tggaggcctctaggattttggagcaaggctctgccatcttctgcagataaatactctcct
tttgagagacggctcttggcctgttactggtctttggtggaaactgaacatttgactatg
gatcgtcaagtcaccatgcaacctgaactgcctatcataaactgggtgctttctgaccca
tctagccataaagtgggttatgcacagcagcattccatcatcaaatggaagtggtatata
tgggatcaggctcaagcaggtcctgaaggtgcaaccaggattcatgggtccaggaatcaa
ggggtggaagtggaagtggtaccactcaccatcacccctagtgacccactagcaaaattt
ttgcttcctgttgcagttacattacgttctgctggcctagagagtccgtgtgagaaccgg
gacacctgtcctgttgaaaagggggacgcaaaagctgaaaatgcccggaaggatatggct
tccttgaactgcgggacgtgtagctgcagctgtggggtggaccatggaaacaggtttgaa
gagagaagctctgttcttcttcatctcccgtcattgttctga

>gi568815596r:24847619_25071904|GENSCAN_predicted_peptide_9|140_aa
MMIGSEDLEVPAMSTSSLYLWNPGFFHGSGVELKNLPCSKLPRGCLVQAEGKPSVNHLLQ
FPSELPRRVTLARLICYFICCHITNLQLSYLQSDQQEEEMEATPWTFTSFRVWVGLGFAV
RASITQDGDGRGSSLKLQII

>gi568815596r:24847619_25071904|GENSCAN_predicted_CDS_9|423_bp
atgatgataggatctgaagacctggaagtaccagccatgtccaccagttccctctacctg
tggaacccaggcttcttccatgggtctggagtggagctcaagaatctgccttgcagcaag
ctccccaggggctgcttggtgcaagctgaagggaagccctctgtgaatcacctccttcag
ttccccagcgagcttcctagaagagtgacattggccagactcatctgctacttcatctgt
tgccacatcacaaacctgcagcttagctacttgcaatctgatcagcaggaagaagagatg
gaagcaacgccatggaccttcacgtccttcagagtgtgggtgggcttgggctttgcagtg
agagcaagtatcacccaggatggagatgggagaggtagcagcctgaagctgcagatcatt
tga