GENSCAN 1.0 Date run: 5-Nov-116 Time: 04:16:16 Sequence gi568815596f:105755064_105993173 : 238110 bp : 44.39% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Init + 5224 5302 79 0 1 97 63 10 0.243 0.62 1.02 Intr + 9302 9442 141 0 0 89 99 46 0.386 6.12 1.03 Intr + 18263 18428 166 0 1 92 93 21 0.161 2.02 1.04 Intr + 30495 30605 111 0 0 61 85 90 0.127 5.49 1.05 Term + 32025 32214 190 0 1 113 47 65 0.119 1.82 1.06 PlyA + 34563 34568 6 1.05 2.04 PlyA - 34999 34994 6 1.05 2.03 Term - 35114 35047 68 0 2 64 31 88 0.393 -1.20 2.02 Intr - 35772 35684 89 2 2 88 92 52 0.217 5.21 2.01 Init - 44765 44746 20 2 2 110 110 19 0.701 4.69 2.00 Prom - 50090 50051 40 -3.06 3.04 PlyA - 50454 50449 6 1.05 3.03 Term - 57505 57414 92 2 2 53 55 109 0.518 1.98 3.02 Intr - 59691 59425 267 1 0 54 3 163 0.269 1.90 3.01 Init - 64616 64547 70 2 1 51 80 73 0.176 4.15 3.00 Prom - 73096 73057 40 -0.96 4.00 Prom + 79388 79427 40 -6.06 4.01 Init + 100001 100226 226 1 1 62 95 445 0.988 41.23 4.02 Intr + 115016 115114 99 0 0 63 33 87 0.029 0.78 4.03 Intr + 126265 126986 722 2 2 110 123 1527 0.892 149.55 4.04 Term + 137919 138113 195 2 0 127 49 399 0.978 37.31 4.05 PlyA + 138670 138675 6 1.05 5.00 Prom + 152830 152869 40 -0.96 5.01 Init + 162194 162274 81 1 0 86 20 107 0.246 2.67 5.02 Intr + 164294 164372 79 1 1 107 87 31 0.214 4.02 5.03 Term + 184385 184536 152 0 2 117 42 114 0.046 7.77 5.04 PlyA + 186246 186251 6 1.05 6.04 PlyA - 186730 186725 6 1.05 6.03 Term - 201055 200918 138 1 0 51 37 146 0.303 3.76 6.02 Intr - 206882 206744 139 1 1 68 94 57 0.207 4.77 6.01 Intr - 237565 237442 124 2 1 71 100 62 0.307 5.34 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815596f:105755064_105993173|GENSCAN_predicted_peptide_1|228_aa MGFPECGPGLWRNANSGELPDFPRGIGLSELHMFIAGHPPRTASLQEPAACSASRLSHKA ASKPDGLPHLTETATRLRQTCLLAVWYTCRPPSVHAPLLMLVFHPWNASLFPTCSAQGHH HCTWNLLGRFPAVNSKGKGPISNSTNRVEATGLALSHLNIRSGVCRRGGTGQLLLLPLPS PLTLSPEHSAGFLFSGLVVLTLKEAQLSAVEGAGPSLSSDMVISVGLG >gi568815596f:105755064_105993173|GENSCAN_predicted_CDS_1|687_bp atggggtttccagaatgtggtcctgggctgtggagaaatgcaaattccggggaactgcct gacttcccgcgtgggatagggctgtctgagctccacatgtttatcgccggccaccctcct aggactgcatccctgcaggagcctgcagcctgctctgcttcgaggctcagccacaaagct gcctcaaaacctgatggcctgcctcatctgactgagacagccacccgcttgaggcagacc tgtcttctcgccgtctggtacacgtgccggcctccatcagtccatgcacctttgctcatg ctggtttttcatccctggaatgcctccttgtttcccacatgctcagctcagggccatcac cactgcacctggaacctgctgggcaggtttcccgctgtgaacagtaaagggaaaggccca atctccaatagcaccaatagagtggaagccacaggattggctctgagccacctcaacatc cgctcaggtgtttgcaggcgtggtggcactgggcagctgctgttactcccactgccctca cctttgaccctcagccctgagcactcagctggatttctcttttctgggttggttgtcctc acactgaaggaagctcagctcagcgccgtggaaggggcaggacccagtctcagctctgac atggtcatatctgtaggcttgggctga >gi568815596f:105755064_105993173|GENSCAN_predicted_peptide_2|58_aa MAEGKASSKAVPSTQVLPMCISWQRETHLDSSLKETGLFVGFDEEETAARIFSSQINF >gi568815596f:105755064_105993173|GENSCAN_predicted_CDS_2|177_bp atggcggaggggaaggccagctcaaaggccgttccctccacccaagtcttgcctatgtgc atcagctggcagcgagagacccacctggacagcagccttaaagaaacaggtctatttgtg ggctttgatgaagaagaaacggctgcccgtatttttagctcacaaatcaacttttaa >gi568815596f:105755064_105993173|GENSCAN_predicted_peptide_3|142_aa MVSMYRLVYVAPVCWELLQTELLGWILMPKCTEEFTFSVTLKVFPNRLESEESLRPWTPD EWALHISNLFCMRTEERLLMPTANQKPEQLLYQTPQKNNELDLELESFDTRHRGPAEACK WISRSEYGGGSASPTQHGVSAV >gi568815596f:105755064_105993173|GENSCAN_predicted_CDS_3|429_bp atggtctccatgtaccgtcttgtctacgtggcacccgtgtgttgggagctcctgcagact gagctgctgggatggattctaatgcccaaatgtacagaggagttcactttctcagtgaca ctaaaggtttttcccaaccgactggagagtgaggaatcacttaggccttggactccggat gagtgggctttgcacatctctaatctcttctgcatgcgaacagaggagagactccttatg ccaacagcaaaccaaaagcctgagcagcttctctaccagaccccgcaaaagaacaatgag ctggatttagaacttgagtcctttgatactaggcacagaggcccagcagaggcctgcaag tggatctcccgttcagagtacggaggcggcagtgccagcccaacacagcacggggtcagc gctgtctga >gi568815596f:105755064_105993173|GENSCAN_predicted_peptide_4|413_aa MTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKN SLKKGSLVKNLKDTLELVPGVPTHWQRDYLRIEMLEDTRPHLYGLKSISLGKTRRKTSAR DASPTPSTDAEYPANGSGADRIYDLNIPAFVKFAYVAEREDELSLVKGSRVTVMEKCSDG WWRGSYNGQIGWFPSNYVLEEVDEAAAESPSFLSLRKGASLSNGQGSRVLHVVQTLYPFS SVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPALHPAHAP QISYTGPSSSGRFAGREWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKAS GKNKHFKVQLVDNVYCIGQRRFHTMDELVEHYKKAPIFTSEHGEKLYLVRALQ >gi568815596f:105755064_105993173|GENSCAN_predicted_CDS_4|1242_bp atgacagaagaagttattgtgatagccaagtgggactacaccgcccagcaggaccaggag ctggacatcaagaagaacgagcggctgtggttgctggacgactccaagacgtggtggcgg gtgaggaacgcggccaacaggacgggctatgtaccgtccaactacgtggagcggaagaac agcctgaagaagggctccctcgtgaagaacctgaaggacacactagagctggttcctggt gtgcccacccactggcaaagggactacctgcgcatagagatgttggaagacactcggccc cacctgtatgggctgaagtccatcagcctcggcaagacgcgcaggaagaccagcgcgcgg gatgcgtcccccacgcccagcacggacgccgagtaccccgccaatggcagcggcgccgac cgcatctacgacctcaacatcccggccttcgtcaagttcgcctatgtggccgagcgggag gatgagttgtccctggtgaaggggtcgcgcgtcaccgtcatggagaagtgcagcgacggt tggtggcggggcagctacaacgggcagatcggctggttcccctccaactacgtcttggag gaggtggacgaggcggctgcggagtccccaagcttcctgagcctgcgcaagggcgcctcg ctgagcaatggccagggctcccgcgtgctgcatgtggtccagacgctgtaccccttcagc tcagtcaccgaggaggagctcaacttcgagaagggggagaccatggaggtgattgagaag ccggagaacgaccccgagtggtggaaatgcaaaaatgcccggggccaggtgggcctcgtc cccaaaaactacgtggtggtcctcagtgacgggcctgccctgcaccctgcgcacgcccca cagataagctacaccgggccctcgtccagcgggcgcttcgcgggcagagagtggtactac gggaacgtgacgcggcaccaggccgagtgcgccctcaacgagcggggcgtggagggcgac ttcctcattagggacagcgagtcctcgcccagcgacttctccgtgtcccttaaagcgtca gggaagaacaaacacttcaaggtgcagctcgtggacaatgtctactgcattgggcagcgg cgcttccacaccatggacgagctggtggaacactacaaaaaggcgcccatcttcaccagc gagcacggggagaagctctacctcgtcagggccctgcagtga >gi568815596f:105755064_105993173|GENSCAN_predicted_peptide_5|103_aa MAAPSLLLTCLPTSLSLQWAGKGQKGARSLGYVLGLEPKPKLSAMTQLSYCVSSACLSNP PTGGHKLGIMAQDEACLEEGIILHEIVDPDNNQQQMLEYLSKG >gi568815596f:105755064_105993173|GENSCAN_predicted_CDS_5|312_bp atggcagctccttccctgctcctcacctgcctccccacctccctctcactgcaatgggct ggaaaggggcagaaaggcgcaaggtccctgggctacgtccttgggttggaacccaagcca aagctaagtgcaatgacacaattgagctattgtgtgagctctgcctgcctgtccaaccca cccacaggtggccacaaacttgggatcatggcccaggatgaggcctgtttagaagaaggt attattcttcatgagatcgtggatccagacaataatcaacaacagatgctagaatactta agcaagggatga >gi568815596f:105755064_105993173|GENSCAN_predicted_peptide_6|133_aa XCIGPRLSMGSGIQLLLLVYTSITGSIQLTDLIKGGNGTYAHFCSLERDNTPLRKRLVLR VRTAPGFCNQLQPPESSSGEEVIEESFQKWTGKREQMPCADVAEEQKSKPAKHSRSPFYK SLNPTYGKKAAMV >gi568815596f:105755064_105993173|GENSCAN_predicted_CDS_6|402_bp ngatgcattggccctcggttatctatgggctcaggcatccagctactgttgttggtgtac acctcaataacaggatccatccaactcacagacctaattaaaggaggaaatgggacatat gcccacttttgctcgttggagagggataacacaccgctaagaaaaagacttgttctgaga gtgaggactgcccccggattttgtaaccagttgcaaccacctgaaagcagctctggggaa gaggtcattgaagagtctttccagaagtggacgggcaagagagaacaaatgccgtgtgct gatgtggcagaagagcagaagagcaagccagccaaacacagccggagccccttttataag agccttaatcccacttacgggaaaaaagctgccatggtctaa