GENSCAN 1.0	Date run:  6-Nov-116	Time: 23:28:13

Sequence gi568815595r:48194640_48398524 : 203885 bp : 45.12% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2520   2568   49  2  1  123   79    46 0.345   5.45
 1.02 Term +  16077  16402  326  1  2   43   55   193 0.034   6.43
 1.03 PlyA +  18435  18440    6                               1.05

 2.04 PlyA -  18970  18965    6                              -0.45
 2.03 Term -  19620  19596   25  2  1  124   48     3 0.643  -2.40
 2.02 Intr -  20822  20668  155  2  2  114   16   118 0.529   6.07
 2.01 Init -  21224  21021  204  2  0   72   96   102 0.862   8.25
 2.00 Prom -  22392  22353   40                              -7.66

 3.00 Prom +  28821  28860   40                              -6.16
 3.01 Init +  28873  29073  201  0  0  100   89   402 0.809  38.38
 3.02 Intr +  29715  29822  108  2  0   71   60   125 0.997   8.48
 3.03 Intr +  29964  30035   72  2  0   77  113    71 0.981   8.10
 3.04 Term +  30654  30785  132  2  0   64   36   108 0.686   1.29
 3.05 PlyA +  30825  30830    6                               1.05

 4.00 Prom +  37247  37286   40                              -5.96
 4.01 Init +  39835  39966  132  0  0   49  110   182 0.527  16.71
 4.02 Intr +  61982  62104  123  1  0   99    8    84 0.016   2.28
 4.03 Intr +  66174  66300  127  2  1   34   82    34 0.015  -2.35
 4.04 Intr +  73276  74132  857  2  2   99   -6   260 0.077   8.78
 4.05 Term +  74274  75143  870  2  0   53   45   406 0.118  25.44
 4.06 PlyA +  78796  78801    6                               1.05

 5.11 PlyA -  80246  80241    6                               1.05
 5.10 Term -  94210  94152   59  2  2  123   39    23 0.120  -1.25
 5.09 Intr - 100164 100042  123  1  0  112   22   123 0.266   8.66
 5.08 Intr - 100596 100436  161  2  2   88  100   201 0.995  20.93
 5.07 Intr - 101519 101480   40  0  1   99   80     6 0.883  -1.82
 5.06 Intr - 102190 102088  103  1  1   39   97    98 0.664   5.55
 5.05 Intr - 124687 124641   47  2  2   53  100    33 0.016  -0.87
 5.04 Intr - 133752 133636  117  1  0   39   97    88 0.340   5.24
 5.03 Intr - 134589 134514   76  0  1   55  103    43 0.004   1.59
 5.02 Intr - 137622 137478  145  2  1    8   15   160 0.033   0.98
 5.01 Init - 155042 154987   56  2  2   83  113    33 0.543   6.06
 5.00 Prom - 165433 165394   40                              -3.16

 6.00 Prom + 171166 171205   40                              -2.36
 6.01 Init + 178129 178218   90  0  0   55   98   114 0.920   9.62
 6.02 Intr + 183744 183887  144  2  0   60  115    58 0.753   6.18
 6.03 Intr + 184713 184919  207  2  0   97   96     5 0.506   1.47
 6.04 Intr + 186063 186273  211  2  1  118  102    31 0.904   5.99
 6.05 Intr + 187061 187239  179  0  2   16   68   198 0.956  10.24
 6.06 Intr + 201147 201173   27  2  0  121   91    27 0.007   4.61

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  62299  62057  243  1  0   89   41   175 0.834   6.71


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:48194640_48398524|GENSCAN_predicted_peptide_1|124_aa
GDQDPTHVSSGLAVEDNMKRSRCRDRPQPPPPDRQEDGVQRAAELSQSLPPRRRAPPGRQ
RLEERTGPAGPEGKEQPPALASQSAEIAASARLPPRLGSEECLCLAAHRLGCEEPLCLAA
QSGK

>gi568815595r:48194640_48398524|GENSCAN_predicted_CDS_1|375_bp
ggggatcaagaccccactcatgtgagctcaggcttggccgtggaagacaatatgaagcgg
agccgctgccgcgaccgaccgcagccgccgccgcccgaccgccaggaggatggagttcag
cgggcagcggagctgtctcagtctttgccgccgcgccggcgagcgccgcccgggaggcag
cggctggaggagcggacgggccccgcggggcccgagggcaaggagcagccgcctgccttg
gcctcccaaagtgccgagattgcagcctctgcccggctgccaccccgtctgggaagtgag
gagtgtctctgcctggccgcccatcgtctgggatgtgaggagcccctctgcctggctgcc
cagtctggaaagtga

>gi568815595r:48194640_48398524|GENSCAN_predicted_peptide_2|127_aa
MRATDKSLEQGPLSRKRQNQDLDSMPPPTNLAVLLMGTCGRIQALPPALCSKLEMQMWAA
MRVEIWDRQVKNCRGYFSAAEDPKKLPICESQNFAGVSKSLEKEWRAEEWVQKPELQAGR
SREPSEA

>gi568815595r:48194640_48398524|GENSCAN_predicted_CDS_2|384_bp
atgagggccacagataaatcacttgaacaaggacccctatccagaaaacggcagaaccag
gacttggactcaatgcccccacccaccaaccttgctgtccttctcatggggacatgtgga
agaattcaagccctgcctcctgccctctgcagcaaactggaaatgcagatgtgggctgcc
atgagggtggaaatatgggacaggcaagtgaagaactgccgggggtacttcagtgctgct
gaggaccccaagaagttgcccatctgtgaatcccaaaactttgctggggtgagcaaatcc
ctggagaaggagtggagggcagaggagtgggtccagaagccagaacttcaggctgggaga
tcacgcgagccctcagaggcttaa

>gi568815595r:48194640_48398524|GENSCAN_predicted_peptide_3|170_aa
MKTQRDGHSLGRWSLVLLLLGLVMPLAIIAQVLSYKEAVLRAIDGINQRSSDANLYRLLD
LDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVKRCMGTVTLNQARGS
FDISCDKDNKRFALLGDFFRKSKEKIGKEFKRIVQRIKDFLRNLVPRTES

>gi568815595r:48194640_48398524|GENSCAN_predicted_CDS_3|513_bp
atgaagacccaaagggatggccactccctggggcggtggtcactggtgctcctgctgctg
ggcctggtgatgcctctggccatcattgcccaggtcctcagctacaaggaagctgtgctt
cgtgctatagatggcatcaaccagcggtcctcggatgctaacctctaccgcctcctggac
ctggaccccaggcccacgatggatggggacccagacacgccaaagcctgtgagcttcaca
gtgaaggagacagtgtgccccaggacgacacagcagtcaccagaggattgtgacttcaag
aaggacgggctggtgaagcggtgtatggggacagtgaccctcaaccaggccaggggctcc
tttgacatcagttgtgataaggataacaagagatttgccctgctgggtgatttcttccgg
aaatctaaagagaagattggcaaagagtttaaaagaattgtccagagaatcaaggatttt
ttgcggaatcttgtacccaggacagagtcctag

>gi568815595r:48194640_48398524|GENSCAN_predicted_peptide_4|702_aa
MNTVAADYTGLTAPFMTLVAAHEKRPFKDEHRWNRQVKQTHAGQACDLSGQHASMGLDEL
AKQQNIIIVLLVVQVPVADGALARGGPVTFEDVAVLFTEAEWKRLSLEQRNLYKEVMLEN
LRNLVSLAESKPEVHTCPSCPLAFGSQQFLSQDELHNHPIPGFHAGNQLHPGNPCPEDQP
QSQHPSDKNHRGAEAEDQRVEGGVRPLFWSTNERGALVGFSSLFQRPPISSWGGNRILEI
QLSPAQNASSEEVDRISKRAETPGFGAVTFGECALAFNQKSNLFRQKAVTAEKSSDKRQS
QVCRECGRGFSRKSQLIIHQRTHTGEKPYVCGECGRGFIVESVLRNHLSTHSGEKPYVCS
HCGRGFSCKPYLIRHQRTHTREKSFMCTVCGRGFREKSELIKHQRIHTGDKPYWTHSEVK
PHVCEECGHGFSQKSSLKSHRRTHSGEKPYVCGECGRGFSRRIVLNGHWRTHTGEKPYTC
FECGRNFSLKSALSVHQRIHSGEKPYACTECGQGFITKSQLIRHQRTHTGEKPYVCGECG
RGFIAQSTLHYHRSTHSKEKPYVCSQCGRGFCDKSTLLAHEQTHSGEKPYVCGECGRGFG
RKILLNRHWRTHTGEKPYACIECGRNFSHKSTLSLHQRIHSGEKPYACVECGQSFRRKSQ
LIIHQKIHSGKSFRGARSEDVILATSQPSATPAEMLREKPCL

>gi568815595r:48194640_48398524|GENSCAN_predicted_CDS_4|2109_bp
atgaacactgtggcagcagactacactggactcacagccccgttcatgactcttgtggct
gcccatgaaaaacgaccattcaaagatgaacatcgatggaatcgacaagttaaacagacc
catgctggccaggcctgtgatctttcggggcagcatgcctccatggggctggatgaactg
gctaagcagcaaaacatcatcatagttttacttgtggttcaggttccagtggcagatggg
gcactggccagagggggaccagtgactttcgaggatgtggctgtgcttttcactgaggca
gagtggaagagactgagccttgagcagaggaacctatacaaagaagtgatgctggaaaat
ctcaggaatctggtctcattggcagaatcaaagccagaagtccatacctgcccttcttgc
cctctggcctttggcagtcagcagttcctcagccaagatgagctacacaatcatcctatt
ccaggtttccatgcaggaaatcaactccacccaggaaatccctgcccagaggatcagcca
cagtcacaacatccttctgataaaaatcacaggggggctgaagcagaagatcaacgagtg
gaaggaggcgtcagacccttgttttggagtacaaatgaaaggggggctttagtgggtttc
tctagcctgttccagagaccaccaataagctcttggggaggcaacagaatattagagata
cagctcagtccagcccagaatgcaagctctgaggaagtagacagaatttccaagagggca
gaaaccccagggtttggagcagtcacgtttggggagtgtgcactagcttttaaccagaag
tcaaacctgttcagacagaaggcagtcacagcagaaaaatcttcagacaaaaggcagtca
caggtgtgcagggagtgtgggcgaggctttagcaggaagtcacagctcatcatacaccag
aggacacacacaggagaaaagccttatgtctgcggagagtgtgggcgaggctttatagtt
gagtcagtcctccgcaaccacctgagtacacactccggggagaaaccttatgtgtgcagc
cattgtgggcgaggctttagctgcaagccatacctcatcagacatcagaggacacacaca
agggagaaatcgtttatgtgcacagtgtgtgggcgaggctttcgtgaaaagtcagagctc
attaagcaccagagaattcacacgggggataagccttattggacacattcagaggtgaaa
cctcacgtgtgtgaggagtgtgggcatggatttagccagaagtcgtcgctcaaatcacat
cggagaacacactcaggggagaagccttatgtgtgtggggaatgtgggcggggatttagc
cggaggatagtcctcaatggacactggaggacacacacgggagagaagccttacacgtgc
tttgagtgtgggcgaaactttagcctcaagtccgctcttagtgtacatcagaggatacac
tctggggagaagccttatgcatgcacggagtgtgggcaaggctttatcacgaaatcacag
ctcatcagacaccagaggacacacacaggagaaaagccttatgtctgcggagagtgtggg
cgaggctttatagctcagtcaaccctccactaccaccggagtacacactccaaggaaaaa
ccttatgtgtgcagccagtgtgggcgaggcttttgtgataaatcaactctcctcgcacac
gagcagacacattcaggggagaagccttatgtgtgtggggaatgtgggcggggatttggc
cggaagatactcctcaacagacactggaggacacacacaggagagaaaccttacgcatgc
atcgagtgtgggcgaaactttagccacaagtccactctcagcttacatcagaggatacac
tcgggggagaagccttatgcatgcgtggagtgtgggcaaagctttaggagaaagtcacag
ctcatcatacaccagaagatacactcggggaaaagctttagaggtgcaaggagtgaggat
gtgattttagcaacaagtcagccatcagccacaccagcggaaatgcttagggagaagcct
tgtttgtaa

>gi568815595r:48194640_48398524|GENSCAN_predicted_peptide_5|308_aa
MHSLITPVIQVDHRHPPATDQKEQAELDKRDKKKATALVMAFRQVDFGGSGKVKGWANRM
PNRDLIPFIMNKLSTKTILFSQFLRATMGVTADVCPTSKVAYFHSSSVTMKGICSDAILV
LATSMWMAFAIGTCDPIQTMQKQKSTKAVHQQILSNKFLIVRMRELLWRKEDCQRFYREH
EGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAPDSIRGSFGLTD
TRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEGGPNLNVLSIGR
PSYILQSN

>gi568815595r:48194640_48398524|GENSCAN_predicted_CDS_5|927_bp
atgcacagcctcattactcctgtcatacaagtggaccatcgtcatcctccagccacagat
cagaaggagcaggcagaactggacaaacgggataaaaagaaggccaccgctttagtcatg
gccttcaggcaagtggactttggaggctctggaaaagtgaaaggctgggcaaatcgaatg
cctaatagggatttgattccattcattatgaacaaactatcaacaaaaaccatcctgttc
agccagtttctcagagcaaccatgggagtcacagcagatgtttgtcctacatcaaaagtt
gcatatttccacagttcttctgtcaccatgaaggggatctgctcagacgccatccttgtt
ctagctacctccatgtggatggcctttgcaattggtacatgtgatcctattcagacaatg
cagaaacagaaatccactaaggctgttcatcagcagattctaagcaacaagttcctgatt
gtacgaatgagagaactactgtggagaaaggaagattgccagaggttttaccgagagcat
gaagggcgttttttctatcagaggctggtggagttcatggccagcgggccaatccgagcc
tacatccttgcccacaaggatgccatccagctctggaggacgctcatgggacccaccaga
gtgttccgagcacgccatgtggccccagattctatccgtgggagtttcggcctcactgac
acccgcaacaccacccatggttcggactctgtggtttcagccagcagagagattgcagcc
ttcttccctgacttcagtgaacagcgctggtatgaggaggaagagccccagttgcgctgt
ggccctgtgtgctatagcccagagggaggtcccaacttaaatgtactttccataggaagg
ccttcctacatcctgcagtccaactag

>gi568815595r:48194640_48398524|GENSCAN_predicted_peptide_6|286_aa
MEIRLPDLALKRIFSFLDLFGLLQVSQVNKMHLAITMDRKKTIKVWNCQDRDALAVLPMP
QPCYCMEAYLTKDGPFLMDFTYLPIDMVGMLWFQVGDAAGDIYTFTLPGLRDVSKVTAFQ
YGIVLLHCSPDKKWVFACGTYSRTLPQVFLTESLLRPSEGSVPLSTFLPHKLCASACWTP
KVKNRITLMSQSSTGKKTEFITFDLTTKKTGGQTVIQAYEIASFQVAAHLKCPIWMGASD
GYMIVFTSGPYLLLFSITGFLLQRFEDHQAAINNFWVTSSDGYCPL

>gi568815595r:48194640_48398524|GENSCAN_predicted_CDS_6|858_bp
atggagatccgattgcctgacttagctttgaagcgaatcttctctttcctggacctgttc
ggcttgctgcaggtttcccaggtgaacaagatgcatctcgccatcactatggatcggaaa
aaaactatcaaagtgtggaactgtcaggacagggacgctctggctgttctccccatgcca
cagccctgttattgcatggaagcctatcttacaaaggatggcccattcctgatggatttc
acatatcttcctattgatatggtggggatgctttggtttcaggttggcgatgctgcaggt
gacatctacacatttacactgcctgggttaagagatgtttctaaagttactgcatttcaa
tatggtattgtacttctacactgctctcctgacaagaaatgggtatttgcatgtgggaca
tacagtcgtaccttgccacaggtattcctcacagagtccttactgagaccatcagaaggc
agtgttcctctgtctacctttctcccacataaattatgtgccagcgcctgctggacccca
aaggtgaaaaacaggataacactgatgtcccaaagtagcactggaaaaaagacagaattt
atcacctttgatctaacaaccaagaagactggaggccaaacagtcatccaagcatatgag
atcgcaagtttccaggtggcagctcatctgaagtgccctatctggatgggagccagtgat
ggatatatgattgtctttaccagtggaccatacttgttactcttcagcatcactggcttc
ctgctgcaacgatttgaggaccatcaggcagccatcaacaacttctgggtgacctcatct
gacggctattgccctttg