GENSCAN 1.0	Date run:  6-Nov-116	Time: 17:39:52

Sequence gi568815595f:170122670_170403124 : 280455 bp : 40.71% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 Intr -   6883   6015  869  2  2  115   91   536 0.127  46.73
 1.05 Intr -  13996  13750  247  1  1   77   75   138 0.927   7.51
 1.04 Intr -  22852  22754   99  1  0   77   99    55 0.754   4.89
 1.03 Intr -  26575  26417  159  1  0   92   95   108 0.765  11.16
 1.02 Intr -  50043  49888  156  0  0   53  110   151 0.910  13.09
 1.01 Init -  56247  56104  144  0  0   66   68   136 0.964   9.57
 1.00 Prom -  57241  57202   40                              -9.25

 2.00 Prom +  58069  58108   40                             -12.72
 2.01 Init +  58150  58338  189  0  0   75   98   131 0.890  11.86
 2.02 Term +  66627  66767  141  2  0   57   43   209 0.985  10.25
 2.03 PlyA +  66838  66843    6                               1.05

 3.00 Prom +  96938  96977   40                              -2.95
 3.01 Init +  99719  99884  166  1  1   55   96   159 0.080  11.26
 3.02 Intr +  99978 100101  124  1  1   35  100   169 0.641  11.52
 3.03 Intr + 112561 112682  122  1  2  117  113   102 0.746  14.82
 3.04 Intr + 137300 137389   90  0  0  105   95    79 0.988   9.35
 3.05 Intr + 140710 140760   51  2  0  124   73    15 0.705   1.56
 3.06 Intr + 145246 145331   86  2  2   87   59    84 0.963   4.02
 3.07 Intr + 147752 147892  141  1  0   77  110   100 0.980  10.73
 3.08 Intr + 157558 157734  177  0  0   77   99   145 0.988  13.69
 3.09 Intr + 158497 158594   98  0  2   40  110    18 0.917  -2.91
 3.10 Intr + 159213 159299   87  0  0   90  109    72 0.986   7.67
 3.11 Intr + 161792 161927  136  2  1   73  100    95 0.956   8.85
 3.12 Intr + 174635 174724   90  1  0   90   80    88 0.994   7.47
 3.13 Intr + 176326 176441  116  0  2   82   91    93 0.985   7.33
 3.14 Intr + 197261 197358   98  2  2   30   96    82 0.030   1.93
 3.15 Term + 199144 199241   98  2  2   93   42    84 0.791   1.45
 3.16 PlyA + 199284 199289    6                               1.05

 4.06 PlyA - 199386 199381    6                               1.05
 4.05 Term - 205914 205712  203  1  2   46   38   222 0.757   9.57
 4.04 Intr - 206080 205942  139  1  1   62   80    43 0.545   0.02
 4.03 Intr - 206237 206151   87  2  0   83  101    46 0.532   4.65
 4.02 Intr - 208005 207863  143  1  2   47   19    95 0.463  -2.35
 4.01 Init - 209923 209806  118  1  1   78   77   105 0.673   8.81
 4.00 Prom - 212191 212152   40                              -7.05

 5.00 Prom + 232684 232723   40                              -2.75
 5.01 Init + 237663 238790 1128  2  0   66   50   543 0.065  42.49
 5.02 Intr + 258575 258672   98  1  2  106  109    34 0.519   5.19
 5.03 Intr + 261864 262096  233  0  2   86   97   110 0.829   8.19
 5.04 Intr + 267554 267795  242  0  2   82   53   203 0.970  12.55
 5.05 Intr + 268367 268591  225  1  0   87  110   204 0.999  19.76
 5.06 Term + 269590 269748  159  0  0   21   43   138 0.956  -0.44
 5.07 PlyA + 270471 270476    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -   6883   5928  956  2  2  115   36   524 0.860  41.13
S.002 Intr + 173242 173321   80  2  2   80   70    80 0.982   3.75
S.003 Term + 180371 180458   88  2  1   78   42   115 0.886   2.05
S.004 Term + 239286 239434  149  1  2  111   47   124 0.923   7.68


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595f:170122670_170403124|GENSCAN_predicted_peptide_1|558_aa
MDTEPNPGTSSVSTTTSSTTTTTITTSSSRMQQPQISVYSGSDRHAVQVIQQALHRPPSS
AAQYLQQMYAAQQQHLMLHTAALQQQHLSSSQLQSLAAVQINLSTSPTPAQLISRSQASS
STSGSITQQTMLLGSTSPTLTASQAQMYLRAQMLIFTPATTVAAVQSDIPVVSSSSSSSC
QSAATQVQNLTLRSQKLGVLSSSQNGPPKSTSQTQSLTICHNKTTVTSSKISQRDPSPES
NKKGESPSLESRSTAVTRTSSIHQLIAPASYSPIQPHSLIKHQQIPLHSPPSKVSHHQLI
LQQQQQQIQPITLQNSTQDPPPSQHCIPLQNHGLPPAPSNAQSQHCSPIQSHPSPLTVSP
NQSQSAQQSVVVSPPPPHSPSQSPTIIIHPQALIQPHPLVSSALQPGPNLQQSTANQVQA
TAQLNLPSHLPLPASPVVHIGPVQQSALVSPGQQIVSPSHQQYSSLQSSPIPIASPPQMS
TSPPAQIPPLPLQSMQSLQVQPEILSQGQVLVQNALVSEEELPAAEALVQLPFQTLPPPQ
TVAVNLQVQPPAPVDPPV

>gi568815595f:170122670_170403124|GENSCAN_predicted_CDS_1|1674_bp
atggatactgaaccaaacccgggaacatcttctgtgtcaacaacaaccagcagtaccacc
accaccaccatcaccacttcctcctctcgaatgcagcagccacagatctctgtctacagt
ggttcagaccgacatgctgtacaggtaattcaacaggcattgcatcggccccccagctca
gctgctcagtaccttcagcaaatgtatgcagcccaacaacagcacttgatgctgcatact
gcagctcttcagcagcagcatttaagcagctcccagcttcagagccttgctgctgttcag
atcaacctctccacttctcctacacctgcacagttaataagccgttcccaggcttccagt
tctaccagcggcagtattacccaacagactatgttactagggagtacttcccctacccta
acggcaagccaagctcaaatgtatctccgagctcaaatgctgattttcacacccgctacc
actgtggctgctgtacagtctgacattcctgttgtctcgtcgtcatcgtcatcttcctgt
cagtctgcagctactcaggttcagaatttaacattacgcagccagaagttgggtgtatta
tctagctcacagaatggtccaccaaaaagcactagtcaaactcagtcattgacaatttgt
cataacaaaacaacagtgaccagttctaaaatcagccaacgagatccttctccagaaagt
aataagaaaggagagagcccaagcctggaatcacgaagcacagctgtcacccggacatca
agtattcaccagttaatagcaccagcttcatattctccaattcagcctcattctctaata
aaacatcagcagattcctcttcattcaccaccttccaaagtttcccatcatcagctgata
ttacaacagcagcaacagcaaattcagccaatcacacttcagaattcaactcaagaccca
cccccatcccagcactgtataccactccagaaccatggccttcctccagctcccagtaat
gcccagtcacagcattgttcaccgattcagagtcatccctctcctttaacagtgtctcct
aatcagtcacagtcagcacagcagtctgtagtggtgtctcctccaccacctcattcacca
agtcagtctcctactataattattcatccacaagcacttattcagccacaccctcttgtg
tcatcagctctccagccagggccaaatttgcagcagtccactgctaatcaggtgcaagct
acagcacagttgaatcttccatcccatcttccacttccagcttcccctgttgtacacatt
ggcccagttcagcagtctgccttggtatccccaggccagcagattgtctctccatcacac
cagcaatattcatccctgcagtcctctccaatcccaattgcaagtcctccacagatgtcg
acatctcctccagctcagattccaccactgcccttgcagtctatgcagtctttacaagtg
cagcctgaaattctgtcccagggccaggttttggtgcagaatgctttggtgtcagaagag
gaacttccagctgcagaagctttggtccagttgccatttcagactcttcctcctccacag
actgttgcggtaaacctacaagtgcaaccaccagcacctgttgatccaccagtg

>gi568815595f:170122670_170403124|GENSCAN_predicted_peptide_2|109_aa
MVTENPNSRHKSKHRLSGTGQTIALHFEAWHKRTTLVTPPSRHTNTCKIQPAVLVHKRPT
QETWVALYTVGCISLGAEEWKQSIKVGRDFRIDVTHTEEEFMAKAESKL

>gi568815595f:170122670_170403124|GENSCAN_predicted_CDS_2|330_bp
atggtcacagagaatccaaattctcggcataagtctaaacatcggttgagcggaactggc
caaaccatcgcactgcatttcgaggcctggcacaaaagaacaactttggtaactccaccg
tctaggcatactaatacctgcaaaatacagccagcagttctggtgcacaagaggcctacc
caggaaacatgggtggcactgtacacagttggctgtatctccctcggtgctgaagagtgg
aaacagagcattaaagttggaagggactttcgaattgatgtgacccatactgaggaagaa
ttcatggcaaaagcagaatctaaactctga

>gi568815595f:170122670_170403124|GENSCAN_predicted_peptide_3|559_aa
MWAFGASEVGGTDAGGVLGPGGCRGGGAYGQWEEPRGSGCSGEATLGSALRARWAALRRG
SEEMPTQRDSSTMSHTVAGGGSGDHSHQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDM
CSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHVFPCVPERPGMPC
PGEDKSIYRRGARRWRKLYCANGHTFQAKRFNRRAHCAICTDRIWGLGRQGYKCINCKLL
VHKKCHKLVTIECGRHSLPQAMNTRESGKASSSLGLQDFDLLRVIGRGSYAKVLLVRLKK
TDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYV
NGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLT
DYGMCKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGEFGLDNFD
SQFTNEPVQLTPDDDRQKYLTGQKNMLQEWGPNPDPERVLGSRTRIQATCPQECGSLVTA
ALIIEKQVEWKKMNYVNLH

>gi568815595f:170122670_170403124|GENSCAN_predicted_CDS_3|1680_bp
atgtgggcctttggagcgagcgaagtgggagggaccgacgcaggaggtgtcttgggcccg
ggcggctgtagaggcggcggcgcctacgggcagtgggaggagccgcgcggttccggctgc
tccggcgaggcgacccttgggtcggcgctgcgggcgaggtgggcagcgttgaggcggggg
agtgaggagatgccgacccagagggacagcagcaccatgtcccacacggtcgcaggcggc
ggcagcggggaccattcccaccaggtccgggtgaaagcctactaccgcggggatatcatg
ataacacattttgaaccttccatctcctttgagggcctttgcaatgaggttcgagacatg
tgttcttttgacaacgaacagctcttcaccatgaaatggatagatgaggaaggagacccg
tgtacagtatcatctcagttggagttagaagaagcctttagactttatgagctaaacaag
gattctgaactcttgattcatgtgttcccttgtgtaccagaacgtcctgggatgccttgt
ccaggagaagataaatccatctaccgtagaggtgcacgccgctggagaaagctttattgt
gccaatggccacactttccaagccaagcgtttcaacaggcgtgctcactgtgccatctgc
acagaccgaatatggggacttggacgccaaggatataagtgcatcaactgcaaactcttg
gttcataagaagtgccataaactcgtcacaattgaatgtgggcggcattctttgccacag
gcaatgaacaccagggaaagtggcaaagcttcatccagtctaggtcttcaggattttgat
ttgctccgggtaataggaagaggaagttatgccaaagtactgttggttcgattaaaaaaa
acagatcgtatttatgcaatgaaagttgtgaaaaaagagcttgttaatgatgatgaggat
attgattgggtacagacagagaagcatgtgtttgagcaggcatccaatcatcctttcctt
gttgggctgcattcttgctttcagacagaaagcagattgttctttgttatagagtatgta
aatggaggagacctaatgtttcatatgcagcgacaaagaaaacttcctgaagaacatgcc
agattttactctgcagaaatcagtctagcattaaattatcttcatgagcgagggataatt
tatagagatttgaaactggacaatgtattactggactctgaaggccacattaaactcact
gactacggcatgtgtaaggaccctaaggaacgattgggttgtcatcctcaaacaggattt
gctgatattcagggacacccgttcttccgaaatgttgattgggatatgatggagcaaaaa
caggtggtacctccctttaaaccaaatatttctggggaatttggtttggacaactttgat
tctcagtttactaatgaacctgtccagctcactccagatgacgatcgccagaaatatctt
acaggacagaaaaatatgttacaagaatggggtcccaatccagaccccgagagagttctt
ggatctcgcacaagaattcaggctacctgcccacaagaatgtggctccctggtgacagct
gcactaattatagaaaaacaagttgagtggaagaagatgaattatgtaaatttacattga

>gi568815595f:170122670_170403124|GENSCAN_predicted_peptide_4|229_aa
MAIIKKSGNNRSLKSQAIIKKETTDAGEDVEKYECFYTIGLQLEHTLQFTMAPARPITGP
GKHFHTQQVLLFPVTSYPGSTLALLTPDSEHPPNIVSRIGGFLVSLTSRMKLQTLAFLPS
GGFVVSVASGVKLQTFMVSIAALKGSVSGVVLSFHPELFLPPGVNLQTFKMSVTAHKGSA
DPNSEQQQELLQGAKEQSFDIAEGGRQLVAAASLGSLLLFPYLTPPTSC

>gi568815595f:170122670_170403124|GENSCAN_predicted_CDS_4|690_bp
atggcgatcattaaaaagtcaggaaacaacagatcattaaaaagtcaggcgatcattaaa
aaggaaacaacagatgctggagaggatgtggagaaatacgaatgcttttatactattggc
cttcagctagagcatactcttcagtttaccatggccccagcacgtcctatcactggacca
gggaaacattttcacactcagcaagtactactattcccagtgaccagctaccctggatct
accttggctctgctgacgccggatagtgaacatcctccaaacattgtgtccagaattggt
gggttcttggtctccctgacttcaagaatgaagctgcagacccttgcgtttcttccttct
ggtggattcgtggtctcggtggcttcaggagtgaagctgcagacctttatggtgagcatt
gcagctctcaaaggcagtgtgtctggagttgttctttccttccatccggagttgttcctc
cctcccggagtgaacctgcagaccttcaagatgagtgttacagctcataaaggtagcgca
gacccaaacagtgagcagcagcaagagttactgcaaggagcaaaagaacaaagcttcgac
attgcagaagggggacgccagctggttgctgctgctagcttgggcagcctgcttttattc
ccttatctgaccccacccacatcctgctga

>gi568815595f:170122670_170403124|GENSCAN_predicted_peptide_5|694_aa
MENLQTNFSLVQGSTKKLNGMGDDGSPPAKKMITDIHANGKTINKVPTVKKEHLDDYGEA
PVETDGEHVKRTCTSVPETLHLNPSLKHTLAQFHLSSQSSLGGPAAFSARHSQESMSPTV
FLPLPSPQVLPGPLLIPSDSSTELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTL
QQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPRTFP
QNGSVLPAKSSLAQLKETGSAFEVEHECLGKCQGLFAPQFYVQPDAPCIQCLECCGMFAP
QTFVMHSHRSPDKRTCHWGFESAKWHCYLHVNQKYLGTPEEKKLKIILEEMKEKFSMRSG
KRNQSKASFLYQFLIMTDAPSGMELQSWYPVIKQEGDHVSQTHSFLHPSYYLYMCDKVVA
PNVSLTSAVSQSKELTKTEASKSISRQSEKAHSSGKLQKTVSYPDVSLEEQEKMDLKTSR
ELCSRLDASISNNSTSKRKSESATCNLVRDINKVGIGLVAAASSPLLVKDVICEDDKGKI
MEEVMRTYLKQQEKLNLILQKKQQLQMEVKMLSSSKSMKELTEEQQNLQKELESLQNEHA
QRMEEFYVEQKDLEKKLEQIMKQKCTCDSNLEKDKEAEYAGQLAELRQRLDHAEADRQEL
QDELRQEREARQKLEMMIKELKLQILKSSKTAKE

>gi568815595f:170122670_170403124|GENSCAN_predicted_CDS_5|2085_bp
atggaaaacctccagacaaatttctccttggttcagggctcaactaaaaaactgaatggg
atgggagatgatggcagccccccagcgaaaaaaatgataacggacattcatgcaaatgga
aaaacgataaacaaggtgccaacagttaagaaggaacacttggatgactatggagaagca
ccagtggaaactgatggagagcatgttaagcgaacctgtacttctgttcctgaaactttg
catttaaatcccagtttgaaacacacattggcacaattccatttaagtagtcagagctcg
ctgggtggaccagcagcattttctgctcggcattcccaagaaagcatgtcgcctactgta
tttctgcctcttccatcacctcaggttcttcctggcccattgctcatcccttcagatagc
tccacagaactcactcagactgtgttggaaggggaatctatttcttgttttcaagttgga
ggagaaaagagactctgtttgccccaagtcttaaattctgttctccgagaatttacactc
cagcaaataaatacagtgtgtgatgaactgtacatatattgttcaaggtgtacttcagac
cagcttcatatcttaaaggtactgggcatacttccattcaatgccccatcctgtgggctg
attacattaactgatgcacaaagattatgtaatgctttattgcggccacgaacttttcct
caaaatggtagcgtacttcctgctaaaagctcattggcccagttaaaggaaactggcagt
gcctttgaagtggagcatgaatgcctaggcaaatgtcagggtttatttgcaccccagttt
tatgttcagcctgatgctccgtgtattcaatgtctggagtgttgtggaatgtttgcaccc
cagacgtttgtgatgcattctcacagatcacctgacaaaagaacttgccactggggcttt
gaatcagctaaatggcattgctatcttcatgtgaaccaaaaatacttaggaacacctgaa
gaaaagaaactgaagataattttagaagaaatgaaggagaagtttagcatgagaagtgga
aagagaaatcaatccaaggcaagttttttatatcaatttttaataatgacagatgcacca
tcaggaatggaattacagtcatggtatcctgttataaagcaggaaggtgaccatgtttct
cagacacattcatttttacaccccagctactacttatacatgtgtgataaagtggttgcc
ccaaatgtgtcacttacttctgctgtatcccagtctaaagagctcacaaagacagaggca
agtaagtccatatcaagacagtcagagaaggctcacagtagtggtaaacttcaaaaaaca
gtgtcttatccagatgtctcacttgaggaacaggagaaaatggatttaaaaacaagtaga
gaattatgtagccgtttagatgcatcaatctcaaataattctacaagtaaaaggaaatct
gagtctgccacttgcaacttagtcagagacataaacaaagtgggaattggccttgttgct
gccgcttcatctccgcttcttgtgaaagatgtcatttgtgaggatgataagggaaaaatc
atggaagaagtaatgagaacttatttaaaacaacaggaaaaactaaacttgattttgcaa
aagaagcaacaacttcagatggaagtaaaaatgttgagtagttcaaaatctatgaaggaa
ctcactgaagaacagcagaatttacagaaagagcttgaatctttgcagaatgaacatgct
caaagaatggaagaattttatgttgaacagaaagacttagagaaaaaattggagcagata
atgaagcaaaaatgtacctgtgactcaaatttagaaaaagacaaagaggctgaatatgca
ggacagttggcagaactgaggcagagattggaccatgctgaggccgataggcaagaactc
caagatgaactcagacaggaacgggaagcaagacagaagttagagatgatgataaaagag
ctaaagctgcaaattctgaaatcatcaaagactgctaaagaatag