GENSCAN 1.0 Date run: 4-Nov-116 Time: 22:11:22 Sequence gi568815595f:147310113_147513548 : 203436 bp : 39.03% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Intr + 1869 2149 281 1 2 58 90 141 0.164 7.57 1.02 Intr + 45997 46209 213 0 0 61 19 185 0.252 6.89 1.03 Term + 49270 49698 429 0 0 64 42 294 0.846 16.72 1.04 PlyA + 49960 49965 6 1.05 2.13 PlyA - 50755 50750 6 -0.45 2.12 Term - 51403 51131 273 1 0 85 48 230 0.066 13.19 2.11 Intr - 51903 51795 109 2 1 99 -23 98 0.009 -0.83 2.10 Intr - 55409 55297 113 2 2 34 81 111 0.009 3.26 2.09 Intr - 60602 60521 82 1 1 78 80 83 0.008 5.22 2.08 Intr - 63530 63392 139 0 1 90 94 77 0.008 7.10 2.07 Intr - 68222 67984 239 1 2 64 57 140 0.016 4.84 2.06 Intr - 75633 75523 111 2 0 49 54 91 0.002 0.38 2.05 Intr - 81483 80819 665 0 2 23 88 653 0.004 48.43 2.04 Intr - 82232 81971 262 1 1 95 4 160 0.423 4.87 2.03 Intr - 82392 82288 105 2 0 76 18 171 0.701 7.31 2.02 Intr - 82710 82641 70 1 1 69 11 146 0.314 2.32 2.01 Init - 83749 83263 487 1 1 88 16 200 0.428 6.26 2.00 Prom - 83819 83780 40 -12.23 3.06 PlyA - 84836 84831 6 1.05 3.05 Term - 86328 85657 672 0 0 25 55 811 0.496 64.26 3.04 Intr - 86916 86705 212 1 2 76 23 208 0.478 10.81 3.03 Intr - 88321 88208 114 2 0 39 75 110 0.425 4.30 3.02 Intr - 92700 92616 85 0 1 111 108 78 0.539 10.57 3.01 Init - 97347 96979 369 0 0 56 55 243 0.093 14.97 3.00 Prom - 97612 97573 40 -10.75 4.00 Prom + 97668 97707 40 -9.25 4.01 Init + 100001 101075 1075 1 1 92 52 1309 0.977 121.77 4.02 Intr + 102379 102569 191 2 2 48 84 271 0.639 21.08 4.03 Intr + 103018 103429 412 0 1 107 88 271 0.705 21.83 4.04 Term + 104570 104628 59 0 2 130 35 38 0.653 -0.43 4.05 PlyA + 106096 106101 6 1.05 5.00 Prom + 107093 107132 40 -6.45 5.01 Sngl + 110887 111390 504 0 0 78 41 259 0.925 15.99 5.02 PlyA + 111989 111994 6 1.05 6.05 PlyA - 112111 112106 6 1.05 6.04 Term - 113394 113290 105 0 0 46 49 126 0.276 1.93 6.03 Intr - 114458 114203 256 1 1 21 37 275 0.425 12.22 6.02 Intr - 114829 114673 157 2 1 9 76 154 0.020 4.45 6.01 Init - 128887 128770 118 1 1 57 77 74 0.389 3.61 6.00 Prom - 131301 131262 40 -4.75 7.00 Prom + 139025 139064 40 -0.15 7.01 Init + 143157 143206 50 2 2 58 97 48 0.278 3.17 7.02 Intr + 197829 197940 112 0 1 99 105 80 0.570 10.26 7.03 Term + 201041 201157 117 1 0 109 42 15 0.350 -3.44 7.04 PlyA + 201615 201620 6 1.05 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Sngl - 51325 51131 195 1 0 80 48 230 0.924 13.11 S.002 Init + 62368 62467 100 0 1 72 116 83 0.821 9.97 S.003 Intr + 67356 67547 192 2 0 83 68 188 0.801 15.07 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815595f:147310113_147513548|GENSCAN_predicted_peptide_1|307_aa XTQFHIQWLAPKQKQLVLPIDMNCQDQPCKDTDIPTVHSNHQASPRLPGIKTIPGILRKQ ESTSLSEKEWLRPGVIDEPSHLYNEIQIQAEITKSNGKKVLVQTIAPKPIDETRSLEEDC DSLGHRKMTQKFNFCALRGGWVRAPAQKCLKSVREDHLALRPFDLSWRQGSAPDPSPGWT INDRTAAAATKEPLDRVAVYLVSGLTPGLLAASTDADSTLGTGFLSSVRRASQHVFANNL TDFSNIHLLTLALGKFEGRLAGQRPEASGGLAPHTQVPSASLIIFSSFQRKRIGFSFRKF IVLICQP >gi568815595f:147310113_147513548|GENSCAN_predicted_CDS_1|924_bp ngaacacaatttcacattcaatggctggctcctaaacagaaacagcttgtgcttcccatt gacatgaactgtcaagaccaaccttgcaaagacacagatatcccaacagttcactctaac caccaagcatcacctagacttcctggaataaagaccatccctgggatcttgagaaagcaa gaaagcacaagcctttcagagaaagagtggctgagaccaggtgtgattgatgagccctct catttatacaatgagattcaaatccaggctgaaataactaagagcaatggaaaaaaagtt cttgttcaaactatagcccctaagccaatagatgaaactcgtagtttggaggaagactgc gacagcttaggccaccggaaaatgacccagaagttcaacttctgcgctctccggggaggc tgggtcagagctccagctcaaaaatgtcttaaatccgttcgggaagatcatctcgcactg aggccatttgacctgagttggcgccagggcagcgccccagaccccagtcctggctggaca ataaatgaccggacagctgcggccgctacaaaggagcccctcgaccgcgtcgctgtttac ttagtgtcgggtctgaccccagggctgcttgcggccagtacagatgctgattccaccctg ggaacaggctttctgtcctccgttcgccgcgctagccagcacgtgtttgcaaacaactta actgacttctcgaatattcatctgctgacgctggctttagggaaatttgaggggagactc gctgggcaaagacccgaggcctctggaggtttggctccccacacgcaggtcccgtccgcc tcgctgattatcttttcttctttccagaggaagcggataggcttcagctttagaaaattt attgttttaatttgccagccgtaa >gi568815595f:147310113_147513548|GENSCAN_predicted_peptide_2|884_aa MVPRGGRRGPATALGLATATQLLSRDPSAGAGSSPHLPRRLRASQCWGSEVEEKRPRRGA VAGTTRSSHKCEKMALAQLARASELCSADPAQGRRGGLSGLLGLWDENLGLSQRSPGPRT LRAGCRGLAQRRLFTFTHPPRAQCRELEGGGRTGGRVLAGGGGWESSDQVVPETRAQEPL IAQKRSTCSSGRNLGFRVLGVLSSPTRQRIQLAVSSPIGARASQPPIPAPPRPMPAAWWP SGLRSQAWPDSSSCFLPEAAALKGVVAVDTSDPIWPVRTLPRQPLVLGPRGPTARWGWSG QTGRHRKSRCFWFQVEKIWRKQPEWIRIFEDGNSTKMESLSLLLHTLPMSPEEEGGRDGG VQERAPGALSARGKGVLDLRRRGKGFLKIFCSSFPENERRMGEGGKHLTGTRPTSTNVSA LPPPGEKPFRCEFEGCERRFANSSDRKKHSHVHTSDKPYTCKVRGCDKCYTHPSSLRKHM KVHGRSPPPSSGYDSATPSALVSPSSDCGHKSQVASSAAVAARTADLSECSEQRQITTPE FPEKSPIAGGNQNKERKRQDSSAVRPEVFAQDYCREAIPATVVQGNGAPAKARGQGLLGI LLAVCNTKAYAAPKHSKRDKGWSRGLTLTLVETNSQPTPLPDRALQGCEYSDNTFLGIPS STRSGALAARVGWPADGLLQPKQAALAPSFPGRPFFITPQIRFCASEATKQMNNEQSLPK EPLNLVTEVDAHREREFGRYQVLQQDSGSFSDLAKAVCGGFGSAEATTTSDYLLNTCCAP STVEEAVACLDLGGIKDVEGGRKSGGGGEKRRGRDCFRVKMHLPFEATSPIRREKCTEKG EKPALGSALFRGFELRPPWPPPQPYSTVSMATQPAAAAAKVEGA >gi568815595f:147310113_147513548|GENSCAN_predicted_CDS_2|2655_bp atggtgcctcggggagggaggcgcgggccagcaaccgcgctcggcctggccaccgccacc cagctcctctccagggacccctcggccggggccgggagctcaccacaccttccccggcgt ctgagggcgagtcagtgctggggatccgaggtagaggaaaagagaccgcgccggggcgca gtcgccgggacaaccagatccagccacaagtgcgagaaaatggcgctggcccagctagcc cgagcttccgaactttgttcggcggacccggctcagggtcggagaggaggcctttcagga ctgctgggcctctgggatgagaatctgggtctttcacagcgcagccccgggcctaggacg ctccgagcgggctgcaggggcctagcccaacgccgcctcttcacattcacccacccaccc agggcgcagtgcagggagctggagggagggggaaggactggaggccgggtgttggcgggg ggcggggggtgggaatccagcgaccaggtggtgccggagacccgggctcaggagccgctg attgcgcagaagcgcagcacttgcagctccggcaggaatctaggcttccgggttctcggg gtcctttcctctcctacacgtcagcgaattcagctggccgtgagctccccgattggggct cgggcatcgcagccaccgatcccagcccctccccggcctatgccagccgcctggtggccc tccgggctgcggagccaggcctggcctgacagcagcagctgttttcttcccgaagccgca gcgctcaagggcgtggttgcggtagacacctcggatcccatttggcctgtgcggacccta ccgcgccaacccctcgtcttaggaccgagaggcccgacagccaggtgggggtggtctggg cagaccggtcgacatcgcaagtcaaggtgcttctggttccaagtggagaaaatttggagg aaacaacccgagtggatcaggattttcgaggatggaaactcgactaagatggagtcactg tcgctcctcctccataccctccccatgagcccagaggaggaaggcgggagggatggaggc gttcaagagagggcaccgggggcgctctctgcacgagggaaaggggtgctcgacctgagg cgccgtggaaagggatttctgaaaatattttgtagttcttttccagaaaatgagagacga atgggggagggtggcaagcacctgacgggaacacgacccacaagcactaatgtctctgcg ttgcctccgccaggcgagaagcccttcagatgcgagttcgagggctgcgagcggcgcttc gccaacagcagcgaccgtaagaagcattcgcacgtgcacactagcgacaagccatacacg tgcaaggtgcggggctgcgacaagtgctacacgcaccccagctcgctgcgtaagcacatg aaggtgcacgggcgctcgccgccgcccagctctggctacgattcggctacaccgtctgcc ctcgtgtcgccctcgtcggactgcggccacaagtcccaggtggcctcctcggcggcggtg gcggcgcgtaccgccgacttgagcgaatgctcagagcaacgtcaaataaccacccctgaa ttcccagagaaaagtccaatagctggtgggaatcaaaacaaggaaagaaaaagacaggac agttcggctgtaagacctgaggtgtttgcgcaagattactgccgggaggccatcccagcc acagtcgtccagggaaacggcgctccagccaaggcacggggtcagggactcctggggatc ctgcttgctgtttgcaacacaaaagcatatgcagcccctaaacattccaagagagacaaa ggctggagccgaggactgactttaaccctggttgaaactaactcacagcccacccccttg cccgatagagctttgcaggggtgtgaatattccgataacactttcctgggaattccgtca tctacaaggtcaggagccttagcagcaagggtggggtggccagcagatggactgctgcag cctaagcaagcagctcttgcccctagcttccctggcaggccatttttcataacgccgcag atccgcttttgtgcctctgaggcgactaaacagatgaataacgagcaaagtctcccgaaa gagccccttaatttagtcacagaagttgatgcccacagggagcgagaatttggcaggtac caggtgcttcagcaggactcgggctcattctctgatttagctaaagctgtctgcggaggg tttggcagtgcagaagcaacaaccaccagcgattatttattgaacacctgctgtgcgcca agcactgtggaggaagctgtagcttgtctagatctgggtgggatcaaagacgtggaggga ggaaggaaaagcgggggtgggggggagaagaggaggggtagggattgttttcgtgtcaag atgcatctcccatttgaggccactagccccattagaagagaaaagtgcacggaaaagggc gagaaacctgcacttggctcggcattgtttaggggattcgagctgcggccgccgtggccg ccgccacagccatacagtacagtatccatggcaacgcaacctgctgctgccgccgccaaa gttgaaggcgcttga >gi568815595f:147310113_147513548|GENSCAN_predicted_peptide_3|483_aa MNIFFALTPALTARAGGRQGQRPPLLAFLVFWSSHQLDSRLGLAGGTALSMGCACSKVGL GIRDDFPVPEGTWLSICACAGKYKFGKKINCSVPINKSESSSPAFPTNFEWNGMRSGGKE RAEAQSQKMRYKTSLVMRKRLRLYRNTLKESMAPLALEGILSEAATGLQALSEPGRGNAA CTFYRGLRRGGSGVSGPVQGAPGSVGRQAAGRPLLAKRGTENIYGWGASEPPPPPTSSFL SPPLPAGHRAPESPGVLAAKLTAASSPSVFPGLHEEPPQASPSRPLNGLLRLGLPGDMYA RPEPFPPGPAARSDALAAAAALHGYGGMNLTVNLAAPHGPGAFFRYMRQPIKQELICKWL AADGTATPSLCSKTFSTMHELVTHVTVEHVGGPEQANHICFWEECPRQGKPFKAKYKLVN HIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGQYSALSVACGPSGEAGPRVWISS SPN >gi568815595f:147310113_147513548|GENSCAN_predicted_CDS_3|1452_bp atgaatatattttttgccctgacgccagcgctgactgcacgggctggaggaaggcagggt cagcgtccgccgctcctcgcctttctggttttctggtcttctcaccaactagattctcgc ttggggctggccggcgggactgccctttccatgggctgtgcttgctcaaaagtcggcttg ggtatccgggatgatttcccggtgcctgaagggacctggctgagcatttgtgcttgtgcc gggaaatataaattcggaaaaaaaattaattgttctgttcccatcaacaagtctgagtct agcagcccagcatttcccaccaactttgagtggaatggaatgaggagtggaggtaaagaa agggccgaggctcaaagtcagaaaatgagatacaagacatccttggtgatgaggaaacga ttacggctttaccgaaacactcttaaagagtcaatggcccccctagcactggaaggcatc ttgtcggaggcggccacgggcctgcaggccctctcagagcctggaaggggaaacgcggcg tgcactttctacagaggcctaagacgaggtggcagtggtgttagcggcccggtacaggga gctccggggagcgtgggtcggcaagcagccggccgccctctcctagccaagcggggcact gaaaatatatatggctggggcgcttcagaaccaccaccacctccaacatcatcatttctg tcacctccactccccgcagggcatcgtgccccggagagccccggggtgttagccgccaaa ctcaccgccgcctccagcccctcggtgttcccgggcctccacgaggagcctccccaggcc tcccccagccgtcctttgaatggactcctgcgtctggggctccctggagacatgtacgcg cggccggagcccttcccgccagggcctgcggcccgcagcgacgccctggcagctgccgca gccctgcatggctacgggggcatgaacctgacggtgaacctcgctgcgccccacggtcct ggcgctttcttccgctacatgcgccagcccatcaaacaggagctcatctgcaagtggctg gcggccgacggcaccgcgaccccgagcctctgctccaaaactttcagcaccatgcacgag ctggtcacgcacgtcaccgtggagcacgtcggcggcccggaacaggccaaccacatttgc ttctgggaggagtgtccgcgccagggaaagcccttcaaagccaaatacaaacttgtaaat cacatccgcgtgcacacgggcgagaagcccttcccttgtcctttcccggggtgtgggaag gtctttgctagatcagaaaatctcaaaatacacaaacgaactcacacaggtcagtattcg gcgctgtctgtcgcgtgcggaccctctggggaagcaggccctcgggtctggatttcctca agtcccaactga >gi568815595f:147310113_147513548|GENSCAN_predicted_peptide_4|578_aa MLLDAGPQYPAIGVTTFGASRHHSAGDVAERDVGLGINPFADGMGAFKLNPSSHELASAG QTAFTSQAPGYAAAAALGHHHHPGHVGSYSSAAFNSTRDFLFRNRGFGDAAAAASAQHSL FAASAGGFGGPHGHTDAAGHLLFPGLHEQAAGHASPNVVNGQMRLGFSGDMYPRPEQYGQ VTSPRSEHYAAPQLHGYGPMNVNMAAHHGAGAFFRYMRQPIKQELICKWIEPEQLANPKK SCNKTFSTMHELVTHVTVEHVGGPEQSNHICFWEECPREGKPFKAKYKLVNHIRVHTGEK PFPCPFPGCGKVFARSENLKIHKRTHTGTETAVGPLPIPTWAWDPNRKSAARSHKRSLDP SHSTLAPGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKPYLCKMCDKSYTHPSSLRKH MKTYFSFVSLGDPDFPRSTVSAGLCRETKPKVPLIGPHLCSGGSKGSRRKGTRGLRLSSR PPHWLFMSVKTRLYSCRSTNPPRRARSLRRPPALATNPPRLPPSCLPPQTTRPQAPYRPP PPQSTTQPATVRSLPILTNGRINVINECYPAGSPRECN >gi568815595f:147310113_147513548|GENSCAN_predicted_CDS_4|1737_bp atgctcctggacgccggcccccagtacccagcgatcggcgtgaccacctttggcgcgtcc cgccaccactccgcgggcgacgtggccgaacgagacgtgggcctgggcatcaacccgttc gccgacggcatgggcgccttcaagctcaaccccagttcgcacgagctggcttcggccggc cagacggccttcacgtcgcaggcgccaggctacgcggctgctgcggccctgggccatcac catcacccgggccacgtcggctcctattccagcgcagccttcaactccacgcgggacttt ctgttccgcaaccggggttttggcgacgcggcggcggcagccagcgcacagcacagcctc tttgctgcatcggccgggggcttcgggggcccacacggccacacggacgccgcgggccac ctcctcttccccgggcttcacgagcaggctgccggccacgcgtcgcctaacgtggtcaac gggcagatgaggctcggcttctcgggggacatgtacccgcgaccggagcagtacggccag gtgaccagcccgcgttcggagcactatgctgcgccgcagctgcacggctacgggcccatg aacgtgaacatggccgcgcatcacggcgccggcgccttcttccgctacatgcgccaaccc atcaagcaagagctcatctgcaagtggatcgagcccgagcagctggccaaccccaaaaag tcgtgcaacaaaactttcagcaccatgcacgagctagttacgcacgtcaccgtggagcac gtaggtggcccggagcagagtaatcacatctgcttctgggaggagtgtccgcgcgagggc aagcccttcaaagccaaatacaaactggttaaccacatccgcgtgcacacgggcgagaag ccctttccctgccccttccctggctgtggcaaggtcttcgcgcgctccgagaatttaaag atccacaaaaggacgcacacaggtacggaaacagctgtaggacccctacccattcccact tgggcctgggacccaaaccgaaagtcagcggccaggtcgcacaaacgcagcctcgacccc tctcattctactttggcaccaggggagaagcccttcaagtgcgagtttgagggctgtgac cggcgcttcgctaacagcagcgaccgcaagaagcacatgcacgtgcacacgagcgacaag ccctatctttgcaagatgtgcgacaagtcctacacgcatcccagttcgctgcgcaaacac atgaagacctatttttcttttgtgagtcttggggaccctgactttcccaggagcacggtt tctgcaggcctgtgcagagaaaccaagcccaaagtcccgctgatcgggcctcacctgtgt tcagggggctccaaggggtccaggaggaagggcactcgcggccttcgcctctctagtcgg ccgccgcactggctctttatgtccgtaaaaacgcgactttattcctgcaggtccacgaat cctcctcgcagggctcgcagccttcgccggccgccagctctggctacgaatcctccacgc ctcccaccatcgtgtctccctccacagacaacccgaccacaagctccttatcgccctcct cctccgcagtccaccacacagccggccacagtgcgctctcttccaattttaacgaatggt cgtataaacgtgataaatgaatgctaccctgctggctctccgagagagtgtaattag >gi568815595f:147310113_147513548|GENSCAN_predicted_peptide_5|167_aa MTCVGLALNRKLKLSVGSRVFPKRPRPKEPFSFGEGLEEGRGWGGRGSGSASQRPGAADL SGCSAWQLASVPATLLPSPGLESGDIPSPPLGVPGVGARARERRRLWLDGGEEGSESSPG QAELSMWRRRRECGHGPREGGHPNRIGAFLSLHSRRRPPQIARLRYD >gi568815595f:147310113_147513548|GENSCAN_predicted_CDS_5|504_bp atgacctgtgtgggccttgctctgaacagaaaactcaaactcagcgtgggttcccgcgtc ttccccaaaaggccaaggcccaaagaacccttttcatttggcgaggggcttgaggaaggg aggggctggggcgggagagggtcggggtctgcaagccagcggcccggcgcagcggacttg tccggctgctcagcttggcagctagcgtccgtgccggcaacgctgttaccctctcctggg ctggagagtggggacatcccttccccgcccctaggcgtccctggggtcggcgccagagcc cgggagcgccggaggctctggctggatggcggcgaggagggctctgagtcctctcccggc caggccgagcttagtatgtggaggcggcggcgggagtgcgggcatggaccaagggaaggg ggacacccaaaccgcattggtgccttcctttccctccactcgcgccgtagacctccccaa attgcccgtctccggtatgactga >gi568815595f:147310113_147513548|GENSCAN_predicted_peptide_6|211_aa MEKALVAWIEDKISHNIILNPSLIQIKALIFFISVKAEKAPCAGIYKEIVAMPFPQEQIL ALPLGIPPNQVESAELIPTKEWTQGADLEGGGRQQPLTSVAELPASGPQQPPGGPDWSSG GMQGGSPGQGRIKPQNCRKGLSSHSLESPVAVRMPVFAAPGDSQAPQTATESGGPNPEPR LHGSAKTRRQKTTRRCGKLRLPQRSAPQDSS >gi568815595f:147310113_147513548|GENSCAN_predicted_CDS_6|636_bp atggagaaagctttagtggcctggatagaagataaaatcagccacaacattatcttaaac ccaagcctaatccagattaaggccctaattttcttcatttctgtgaaggctgagaaagcc ccttgtgctggaatctacaaggaaattgtagcaatgccgttcccacaagaacaaatattg gcacttccactaggaatccccccaaaccaagtggaaagtgcggagctcatacctacaaaa gagtggacccaaggggcagacctggagggaggaggccgccagcagcccctgacgtcagtg gcggagctgcctgcgtcaggtccccagcagcccccgggtggcccggactggagctccggg ggcatgcagggagggagtcccgggcagggtcggataaaacctcagaactgtcgaaagggg ctttcctcgcactcgctcgaaagtcctgtcgcagttagaatgccagtgtttgctgctccg ggggactcacaggcacctcagactgcgacagagtctggaggcccaaacccggaaccgcgc ctgcatggctccgccaaaacccggcggcaaaaaacaacacgcaggtgcggaaaattgcgt ctgccgcagcgatcggcaccccaggacagcagctga >gi568815595f:147310113_147513548|GENSCAN_predicted_peptide_7|92_aa MVINIMEKKTTGNAESSSWEALGCDFKLERLSGARFDMAQSQGIAKSEVLPAGLHFKSVV IPYVRSRKMLCFPLRISDLDNGELDQSGIWDF >gi568815595f:147310113_147513548|GENSCAN_predicted_CDS_7|279_bp atggtaataaatattatggagaaaaagacaacaggaaatgcagagtcaagctcctgggaa gctctaggatgtgactttaagctggaaagactctcaggagctaggtttgatatggcacaa tctcaaggcatcgctaagtctgaagttcttccagcaggtctgcattttaaaagtgtggtt atcccatatgttaggtccagaaaaatgttgtgttttcctctgagaatatctgatcttgat aatggagaactagaccaaagtggcatctgggatttttaa