GENSCAN 1.0	Date run:  6-Nov-116	Time: 09:01:33

Sequence gi568815595f:12468870_12682250 : 213381 bp : 44.06% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   3431   3574  144  1  0   96   32    85 0.395   4.18
 1.02 Intr +   4300   4397   98  0  2  123   63     9 0.495   0.71
 1.03 Intr +   4794   4903  110  0  2   64   85    53 0.563   2.53
 1.04 Intr +   7394   7480   87  0  0   81   66    83 0.585   5.34
 1.05 Intr +  15111  15196   86  1  2   67   85    44 0.277   1.54
 1.06 Intr +  15392  15648  257  1  2   82  116   127 0.769  11.14
 1.07 Intr +  15869  15979  111  2  0   81   41    68 0.241   0.89
 1.08 Term +  18174  18396  223  0  1   81   41    63 0.098  -2.71
 1.09 PlyA +  18801  18806    6                               1.05

 2.00 Prom +  20331  20370   40                              -2.16
 2.01 Init +  20932  21120  189  0  0   65  106   197 0.607  18.21
 2.02 Intr +  23267  23348   82  1  1   57   98    23 0.457  -0.59
 2.03 Intr +  28255  28372  118  2  1  104   77    22 0.487   2.22
 2.04 Intr +  34393  34915  523  1  1   98  100   282 0.766  23.35
 2.05 Intr +  50190  50328  139  2  1   37  102   142 0.734  10.54
 2.06 Intr +  60019  60055   37  2  1  121   58    41 0.992   1.72
 2.07 Intr +  60893  61004  112  2  1  105   87    81 0.991  10.08
 2.08 Intr +  65390  65429   40  1  1   60   90    64 0.565   1.60
 2.09 Term +  65611  65621   11  2  2  102   39     7 0.422  -4.44
 2.10 PlyA +  67603  67608    6                               1.05

 3.03 PlyA -  67800  67795    6                               1.05
 3.02 Term -  71564  71324  241  1  1   74   54   283 0.991  19.00
 3.01 Init -  73064  72991   74  2  2   78   86    75 0.668   6.84
 3.00 Prom -  74296  74257   40                              -5.86

 4.00 Prom +  85626  85665   40                              -4.96
 4.01 Init +  88200  88363  164  2  2   75   78   117 0.790   6.62
 4.02 Intr +  93837  94025  189  0  0   60  101    76 0.793   4.80
 4.03 Intr + 100006 100128  123  1  0  109  -14    92 0.303   0.80
 4.04 Intr + 101202 101383  182  0  2   76   81    37 0.466   1.31
 4.05 Intr + 103200 103435  236  1  2   91   85   359 0.350  33.31
 4.06 Intr + 105923 106137  215  1  2   82   97   143 0.960  12.11
 4.07 Intr + 107762 107872  111  2  0   82   98    59 0.981   5.79
 4.08 Intr + 112939 113083  145  1  1  134   86    96 0.967  14.28
 4.09 Term + 113247 113384  138  2  0   66   43   206 0.999  11.86
 4.10 PlyA + 114477 114482    6                               1.05

 5.15 PlyA - 114753 114748    6                               1.05
 5.14 Term - 115788 115645  144  0  0   59   33   130 0.981   2.51
 5.13 Intr - 116112 115978  135  0  0   98  110    36 0.982   7.56
 5.12 Intr - 116384 116253  132  2  0   20  111   195 0.756  15.84
 5.11 Intr - 118768 118645  124  0  1  118  -22    13 0.093  -6.11
 5.10 Intr - 122105 121929  177  1  0  130   64   156 0.266  16.43
 5.09 Intr - 122923 122839   85  2  1   70  101    58 0.995   4.18
 5.08 Intr - 130939 130822  118  1  1   69  115    53 0.881   6.14
 5.07 Intr - 131410 131283  128  2  2   39   68    58 0.515  -0.70
 5.06 Intr - 131546 131519   28  2  1  113   80    35 0.829   2.89
 5.05 Intr - 135420 135267  154  2  1   82   75    52 0.745   3.37
 5.04 Intr - 140054 139897  158  2  2   90   61   184 0.846  14.71
 5.03 Intr - 140466 140364  103  2  1   63   78    60 0.818   2.68
 5.02 Intr - 143193 143081  113  0  2   87   90    39 0.807   3.18
 5.01 Init - 149852 149646  207  2  0   64   68   243 0.999  18.72
 5.00 Prom - 152431 152392   40                              -3.56

 6.00 Prom + 152779 152818   40                              -0.86
 6.01 Init + 170195 170333  139  1  1   39   72    89 0.430   2.70
 6.02 Intr + 170484 170886  403  1  1   52   49   187 0.012   4.69
 6.03 Intr + 194835 195017  183  0  0   56   76    62 0.091   0.70
 6.04 Term + 195225 195393  169  0  1   59   43   202 0.442  10.15
 6.05 PlyA + 196415 196420    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 170484 170890  407  1  2   52   49   193 0.942   7.15


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595f:12468870_12682250|GENSCAN_predicted_peptide_1|371_aa
KRGQYILALKNQRSRSALPLPIGMILWIESFVISSSAQSARTRIPGAQPTQEVASSLPRG
LRPFGIWDKDFYVAPIPDGVLEKCNCQRDRIHVSSSQHVSSLQAHSAESQVQIKMVLGLE
QGIRKCSGDSQEGSTEKEESEEASGTRSLGTQRLLARCLPEKTSLQVPRMLQRTQDRSGF
RTILQRAAKRARSLRLILRSGRAGAQNTRQPAVRRRTPPSPDGSSAAAHSAGFAAALLDG
SGVRPTAGVAGVTASAWGQESPWFLETPAPCSGLVGLGRKVQLTMPERSRSLWWSSVGSI
PRGGVAGSCRNYVFDILRNCQTPPVLFDLKMKLGLEKVGCARSHNNNGGFACLEGLLRAK
FLRGVQPHEQE

>gi568815595f:12468870_12682250|GENSCAN_predicted_CDS_1|1116_bp
aaaaggggccagtacatcctggcactgaaaaatcagcgcagccgttcagcactacccctg
cctataggaatgattctctggatagaatcattcgtcatttcctcatctgcacagtcagct
agaacaagaattcctggagctcaacccacccaggaagtggcctccagcctccctcgtggt
ctgagaccatttggcatttgggataaggatttctatgtggcccctatcccagatggtgtc
ttagagaaatgtaactgccaaagggaccggatacacgtgtcctccagccaacacgtcagc
tccctgcaggcacactccgcagaaagccaagttcaaatcaaaatggtgcttggtttagag
caagggattcggaaatgctctggagacagtcaagaaggaagcacagaaaaggaagagtca
gaggaagcctctggaacacgcagtctgggcacacagaggcttctggccaggtgtctgcca
gagaaaacgtccttgcaagttccccgcatgctgcagcgtacacaggatcgttctggcttc
cgtacaatcctgcagagagcagcaaagcgcgcacgcagcctccgcctcatactccgcagt
ggcagagctggcgcacagaacacccgccagccggccgtgcgcaggcgcactccgccaagt
cccgacgggagctctgcggctgcgcactcggctggctttgcggccgcactgcttgacggc
agcggtgtccgccccacggccggcgttgccggggtaacggcgagcgcgtggggccaagaa
agcccttggttcttggaaacgccggcgccttgttcagggctggtggggctggggcgcaag
gtgcagctgacaatgcccgagaggagccgcagcctctggtggagttcggtcgggtctata
cctaggggtggagttgctggatcatgtcgtaactatgtgtttgacattttgaggaactgc
cagactcctccagtcctgttcgatttgaagatgaaactgggcttagagaaagtgggttgt
gcaaggtcacacaataataatggcggctttgcatgtctggaaggcctactgcgagccaaa
ttcctgaggggtgtgcagccacatgagcaagagtaa

>gi568815595f:12468870_12682250|GENSCAN_predicted_peptide_2|416_aa
MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL
YGKGYFGKGILSRSRPSFTISDPKLVAKWKALFGVQHFPHVSYVGLDCRCLESRDQALLL
SAVPHFVVPWYQHSVEWAAELMRRQGQDESTVRRILKDYTKPLEHPPVKRNEEAQVHDKL
NSGMVSNMEGTAGGERPSVVNGDSGKSGGVGDPREPLGCLQEGSGCHPTTESFEKSVRED
ASPLPHVCCCKQDALILQRGLHHEDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSEREAA
PNEEEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFY
HASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKCQKDSMTTTYGSKACG

>gi568815595f:12468870_12682250|GENSCAN_predicted_CDS_2|1251_bp
atggcagaagcagttttccatgccccaaagaggaaaagaagagtgtatgagacttacgag
tctccattgccaatcccttttggtcaggaccatggtcctctgaaagaattcaagatattc
cgtgctgaaatgattaacaacaatgtgattgtgaggaatgcggaggacattgagcagctc
tatgggaaaggttattttggaaaaggtattctttcaagaagccgtccaagcttcacaatt
tcagatcctaaactggttgctaaatggaaagccctcttcggcgtgcagcactttcctcat
gtgtcatacgtgggtttagactgtcggtgcttggagagcagagatcaggcccttctcctc
tctgcagtgccacactttgtggtcccttggtatcagcatagtgttgagtgggcagcagag
ctgatgcgtagacaggggcaggatgagagtacagtgcgcagaatcctcaaggattacacg
aaaccgcttgagcatcctcctgtgaaaaggaatgaagaggctcaagtgcatgacaagctt
aactctggaatggtttccaacatggaaggcacagcagggggagagagaccttctgtggta
aacggggactctggaaagtcaggtggtgtgggtgatccccgtgagccattaggctgcctg
caggagggctctggctgccacccaacaacagagagctttgagaaaagcgtgcgagaggat
gcctcacctctgccccatgtctgttgctgcaaacaagatgctctcatcctccagcgtggc
cttcatcatgaagacggcagccagcacatcggcctcctgcatcctggggacagagggcct
gaccatgagtacgtgctggtcgaggaagcggagtgtgccatgagcgagagggaggctgcc
ccaaatgaggaagagcctttaacgatagtgaagctctggaaagctttcactgtagttcag
cccacgttcagaaccacctacatggcctaccattactttcgaagcaagggctgggtgccc
aaagtgggactcaagtacgggacagatttactgctatatcggaaaggccctccattttac
catgcaagttattctgtcattatcgagctagttgatgaccattttgaaggctctctccgc
aggcctctcagttggaagtccctggctgccttgagcagagtttccgttaatgtctctaag
tgtcagaaagattccatgacgaccacctatggatccaaggcatgtggctaa

>gi568815595f:12468870_12682250|GENSCAN_predicted_peptide_3|104_aa
MYGMMEQWDKYLEDFSTSGAWLPHRYEDNHHNCYSYALTFINCVLMAEGRQQLDKGEFTE
KYVVPRTRLASKFITLYRAIREHGFYVTDCPQQQAQPPEGGGLC

>gi568815595f:12468870_12682250|GENSCAN_predicted_CDS_3|315_bp
atgtatggaatgatggagcaatgggacaagtacctggaagacttctccacctcgggggcc
tggctgcctcacaggtatgaagacaaccaccataactgctactcttacgcactcacgttc
attaactgcgttctgatggcagaaggtagacagcaactggacaagggtgaatttacggag
aagtacgtggtcccgcggacaaggctggcatccaagttcatcacactctaccgggcgata
cgggagcatggcttctacgtcactgactgtccccagcagcaggcacaaccccctgagggc
ggcggtttgtgctga

>gi568815595f:12468870_12682250|GENSCAN_predicted_peptide_4|500_aa
MGRARAKAEAAAAARGGGTTTVPQPSHHEHQADHLQVSALEPGASGRSPRPQGGRSAAAL
DSNRSTNPIVSCACEGSTLCASYENLMPDELSLSPMTPRWDHLVAEKQAQCSTDSTLWYF
MHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRYDHTRPSAAAGGAVGTMAHSV
PSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKTQPSMVSNPGSC
SDPQPSPEMKPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGECRFGDACVYLHGEIC
MLTFEHEMEKAFAFQASQDKVCSICMEVILEKASASERRFGILSNCNHTYCLSCIRQWRC
AKQFENPIIKSCPECRVISEFVIPSVYWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGT
CPFGSKCLYRHAYPDGRLAEPEKPRKQLSSQGTVRFFNSVRLWDFIENRESRHVPNNEDV
DMTELGDLFMHLSGVESSEP

>gi568815595f:12468870_12682250|GENSCAN_predicted_CDS_4|1503_bp
atgggccgggccagggccaaggccgaggcggcagcggctgcgagaggcggcggcacgacg
acggtccctcagcccagccaccatgagcaccaagcagatcacttgcaggtcagtgcgctg
gagccaggagcttcgggccgctcccccaggccgcaggggggccgatcagcagcagcatta
gattctaatagaagcactaaccctattgtcagctgtgcatgtgagggatctacgttgtgt
gcttcttatgagaatctaatgcctgatgaactgtcactgtctcccatgacccccagatgg
gaccatctagttgcagaaaaacaagctcagtgttccactgattctacactatggtatttt
atgcatggtgtgtgtcgggaaggaagtcagtgcctattctcacatgacttggcaaacagc
aaaccgtccaccatctgcaagtactaccagaagggctactgtgcctatggaactcgatat
gaccacacgaggccctctgctgcagctggaggtgctgtgggcaccatggcccacagtgtg
ccctccccagctttccacagtcctcaccctccttccgaggtcactgcatccattgtgaaa
actaactcacatgaacccggaaagcgtgaaaagagaacattggttcttagagaccgaaat
ctctctggcatggctgaaaggaagacccagccgagcatggtgagtaatccaggcagctgc
agcgacccccagcccagccccgagatgaagccgcattcctacctggatgccatcaggagt
ggccttgatgacgtggaggccagcagctcctacagcaacgagcagcagctgtgcccctac
gcagctgctggggagtgccggtttggggatgcctgtgtctacctgcacggggagatctgc
atgttgacgttcgaacacgagatggaaaaggcctttgccttccaggcaagccaggacaaa
gtgtgcagtatctgcatggaagtgatcctggagaaggcctctgcttctgagaggagattt
gggattctctccaattgcaatcacacgtactgtttgtcctgcatccggcagtggcggtgt
gccaaacagtttgaaaacccaatcattaagtcttgtccagaatgccgtgtgatatcagag
tttgtaattccaagtgtgtattgggtggaagatcagaataaaaagaacgagttgattgaa
gctttcaaacaggggatggggaaaaaagcctgtaaatactttgagcaaggcaaggggacc
tgcccatttggaagcaaatgtctttatcgccatgcttaccccgatgggcggctagcagag
cctgagaaacctcggaaacagctcagttctcaaggcactgtgaggttctttaattcagtg
cggctctgggatttcatcgagaaccgagaaagccggcatgtccccaacaatgaagatgtc
gacatgacagagctcggggacctcttcatgcacctttctggagtggaatcatcagaaccc
taa

>gi568815595f:12468870_12682250|GENSCAN_predicted_peptide_5|601_aa
MEHIQGAWKTISNGFGFKDAVFDGSSCISPTIVQQFGYQRRASDDGKLTDPSKTSNTIRV
FLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAAS
LIGEELQVDFLDHVPLTTHNFARKTFLKLAFCDICQKFLLNGFRCQTCGYKFHEHCSTKV
PTMCVDWSNIRQLFSQHRYSTPHAFTFNTSSPSSEGSLSQRQRSTSTPNVHMVSTTLPVD
SRMIEDAIRSHSESASPSALSSSPNNLSPTGWSQPKTPVPAQRERAPVSGTQEKNKIRPR
GQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNE
VAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTA
QGMDYLHAKNIIHRDMKSNSILWLLSSFDCSVLNLGKQKGGFLSQAPEVIRMQDNNPFSF
QSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVAD
CVKKVKEERPLFPQILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPV
F

>gi568815595f:12468870_12682250|GENSCAN_predicted_CDS_5|1806_bp
atggagcacatacagggagcttggaagacgatcagcaatggttttggattcaaagatgcc
gtgtttgatggctccagctgcatctctcctacaatagttcagcagtttggctatcagcgc
cgggcatcagatgatggcaaactcacagatccttctaagacaagcaacactatccgtgtt
ttcttgccgaacaagcaaagaacagtggtcaatgtgcgaaatggaatgagcttgcatgac
tgccttatgaaagcactcaaggtgaggggcctgcaaccagagtgctgtgcagtgttcaga
cttctccacgaacacaaaggtaaaaaagcacgcttagattggaatactgatgctgcgtct
ttgattggagaagaacttcaagtagatttcctggatcatgttcccctcacaacacacaac
tttgctcggaagacgttcctgaagcttgccttctgtgacatctgtcagaaattcctgctc
aatggatttcgatgtcagacttgtggctacaaatttcatgagcactgtagcaccaaagta
cctactatgtgtgtggactggagtaacatcagacaactcttttctcagcacagatattct
acacctcacgccttcacctttaacacctccagtccctcatctgaaggttccctctcccag
aggcagaggtcgacatccacacctaatgtccacatggtcagcaccaccctgcctgtggac
agcaggatgattgaggatgcaattcgaagtcacagcgaatcagcctcaccttcagccctg
tccagtagccccaacaatctgagcccaacaggctggtcacagccgaaaacccccgtgcca
gcacaaagagagcgggcaccagtatctgggacccaggagaaaaacaaaattaggcctcgt
ggacagagagattcaagctattattgggaaatagaagccagtgaagtgatgctgtccact
cggattgggtcaggctcttttggaactgtttataagggtaaatggcacggagatgttgca
gtaaagatcctaaaggttgtcgacccaaccccagagcaattccaggccttcaggaatgag
gtggctgttctgcgcaaaacacggcatgtgaacattctgcttttcatggggtacatgaca
aaggacaacctggcaattgtgacccagtggtgcgagggcagcagcctctacaaacacctg
catgtccaggagaccaagtttcagatgttccagctaattgacattgcccggcagacggct
cagggaatggactatttgcatgcaaagaacatcatccatagagacatgaaatccaacagt
atcctttggttgttgagttcatttgactgctcggttctaaatttagggaaacagaaggga
ggctttctatcacaagccccagaggtgatccgaatgcaggataacaacccattcagtttc
cagtcggatgtctactcctatggcatcgtattgtatgaactgatgacgggggagcttcct
tattctcacatcaacaaccgagatcagatcatcttcatggtgggccgaggatatgcctcc
ccagatcttagtaagctatataagaactgccccaaagcaatgaagaggctggtagctgac
tgtgtgaagaaagtaaaggaagagaggcctctttttccccagatcctgtcttccattgag
ctgctccaacactctctaccgaagatcaaccggagcgcttccgagccatccttgcatcgg
gcagcccacactgaggatatcaatgcttgcacgctgaccacgtccccgaggctgcctgtc
ttctag

>gi568815595f:12468870_12682250|GENSCAN_predicted_peptide_6|297_aa
MQGWFNIHNPSYKQNQNQNYVIISIDAEKAFNKIQQPFMLKTLNKPVSEVLARAIRQEKE
IKGIQLGKEEVKLSLFADDMIVYLENLIVSAQNLLKLTGNFSKVSGYKINVQKSQAFLYT
NNRQTESQIMSELSFTIASKRIKYLGIRLTRDVKDLFKENYKPLLNKIKEDTNGRTFHAH
GRGAAPSAPPRPGRPGSRSLSPAARLPRHPRPGPATYLREPGRPNVLSFGGSFSPAPPPR
GGWRPKRPRLRLSGGPDERALDSVLVLPTCDATGSPILREPYWQSTSNLARASIALA

>gi568815595f:12468870_12682250|GENSCAN_predicted_CDS_6|894_bp
atgcaaggctggttcaacatacataatccatcatataaacagaaccaaaatcaaaactac
gtgattatctcaatagatgcagaaaaggccttcaacaaaattcaacagcccttcatgcta
aaaactctcaataaaccagtgtcggaagttctggccagagcaatcaggcaagagaaagaa
ataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatg
attgtatatttagaaaacctcatcgtctcagcccaaaatctccttaagctgacaggcaac
ttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcccaagcattcctatacacc
aataacagacaaacagagagccaaatcatgagtgaactctcattcacaattgcttcaaag
agaataaaatacctaggaatccgacttacaagggatgtgaaggacctcttcaaggagaac
tacaaaccactgctcaacaaaataaaagaggacacaaatggaagaacattccatgctcat
ggccgcggggccgctccatcagcgccacccaggcccggtcgccctggaagccgatccctc
agccccgccgcccggctcccccggcatccacgacccggtcctgccacctacctgagggag
ccaggccgccccaacgtcctgtcgttcggcggcagcttctcgcccgctcctcctccccgc
ggcggatggcggcccaagcgcccgcgattaagactctcgggcggcccagacgagcgagcc
ctcgactcggtgctcgtcctcccgacctgcgacgccaccggctctccgattctgcgcgag
ccctactggcagtcgacttctaacttggctcgggcatccatcgctctggcctga