GENSCAN 1.0	Date run:  6-Nov-116	Time: 17:20:16

Sequence gi568815594f:106216548_106447689 : 231142 bp : 35.59% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Sngl +     75    773  699  2  0   68   43   271 0.988  16.55
 1.02 PlyA +    842    847    6                               1.05

 2.08 PlyA -   2384   2379    6                               1.05
 2.07 Term -   3860   3478  383  0  2  -47   28   219 0.007  -3.58
 2.06 Intr -  13899  13816   84  1  0   88  121    -3 0.539   1.87
 2.05 Intr -  16517  16391  127  2  1   82   88   111 0.984   9.83
 2.04 Intr -  17103  17041   63  0  0  119   18    72 0.705   1.30
 2.03 Intr -  19972  19843  130  0  1  100   86    75 0.979   8.28
 2.02 Intr -  28217  28079  139  0  1   65   80   136 0.984   9.10
 2.01 Init -  35968  35956   13  1  1   82   49     9 0.172  -3.10
 2.00 Prom -  38088  38049   40                              -5.25

 3.02 PlyA -  38189  38184    6                               1.05
 3.01 Sngl -  39011  38691  321  2  0   71   48   186 0.502   8.64
 3.00 Prom -  39549  39510   40                              -4.25

 4.00 Prom +  54540  54579   40                              -5.45
 4.01 Init +  57063  57262  200  2  2    9   98   192 0.604  10.72
 4.02 Intr +  75116  75242  127  2  1    3   64   192 0.374   8.06
 4.03 Intr +  87586  87723  138  0  0   37   81    62 0.011   0.14
 4.04 Intr +  99338  99508  171  1  0  113   47   161 0.012  13.72
 4.05 Intr +  99702  99797   96  2  0  116   64    23 0.304   1.99
 4.06 Intr + 104630 104748  119  1  2   77   53   102 0.379   3.94
 4.07 Intr + 108438 108571  134  0  2  104   71    87 0.764   7.97
 4.08 Intr + 110904 111017  114  1  0   47   76   198 0.999  14.00
 4.09 Intr + 111529 111696  168  2  0   87   63   153 0.998  11.70
 4.10 Intr + 115125 115336  212  1  2   47   89   270 0.993  20.71
 4.11 Intr + 120322 120490  169  0  1   52   96   139 0.954   9.70
 4.12 Term + 130979 131145  167  0  2  100   38   182 0.847  11.50
 4.13 PlyA + 131189 131194    6                               1.05

 5.07 PlyA - 131384 131379    6                               1.05
 5.06 Term - 141896 141636  261  2  0   90   38   112 0.367   0.94
 5.05 Intr - 145791 145627  165  0  0   82   86    20 0.215   0.44
 5.04 Intr - 150890 150496  395  0  2   92   90   268 0.447  20.85
 5.03 Intr - 152244 152163   82  0  1  -22  121    68 0.012  -2.61
 5.02 Intr - 162029 161920  110  0  2   50   78    99 0.176   4.18
 5.01 Init - 162728 162650   79  2  1   64  107    24 0.623   3.17
 5.00 Prom - 162882 162843   40                              -3.45

 6.02 PlyA - 164185 164180    6                               1.05
 6.01 Sngl - 168801 168538  264  0  0   74   42   152 0.716   4.15
 6.00 Prom - 169273 169234   40                              -4.95

 7.04 PlyA - 170923 170918    6                               1.05
 7.03 Term - 173012 172959   54  2  0  117   54    71 0.962   3.18
 7.02 Intr - 173916 173851   66  0  0   47  106    64 0.680   2.28
 7.01 Init - 175451 175410   42  2  0   59  100    34 0.796   2.17
 7.00 Prom - 179649 179610   40                              -3.15

 8.03 PlyA - 179997 179992    6                               1.05
 8.02 Term - 187936 187314  623  2  2   47   48   259 0.122  11.39
 8.01 Init - 189518 188852  667  2  1   49  -33   304 0.120   9.82
 8.00 Prom - 189611 189572   40                              -6.15

 9.05 PlyA - 190146 190141    6                               1.05
 9.04 Term - 190913 190690  224  0  2  -78   34   267 0.352   0.80
 9.03 Intr - 191200 191038  163  1  1   64   71    75 0.141   2.03
 9.02 Intr - 214186 214098   89  2  2   77   47    89 0.362   2.47
 9.01 Init - 215342 215186  157  2  1   68   32   181 0.405  10.62

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -   3762   3478  285  0  0   75   28   177 0.832   5.69
S.002 Init -  92413  92221  193  1  1   48  115   158 0.915  12.41


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594f:106216548_106447689|GENSCAN_predicted_peptide_1|232_aa
MGKFLDTYTLPRLNQEEVQSLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEEL
VPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILP
NQIQQHIKMLIHHDQVGFIPGMQGWFNIHKSINVIQHINRAKDKNHMIISIDAEKAFDKI
QQPFMLKTLNKLGIDGTYFKIIRAIYEKPTANIILNGQKLEAFPLKTGTRQG

>gi568815594f:106216548_106447689|GENSCAN_predicted_CDS_1|699_bp
atgggtaaattccttgacacatacactctcccaagactaaaccaggaagaagttcaatct
ctgaatagaccaataacaggatctgagattgtggcaataatcaatagcttaccaaccaaa
aagagtccaggaccagatggattcacagccgaattctaccagaggtacaaggaggaactg
gtaccattccttctgaaactattccaatcaatagaaaaagagggaatcctccctaactca
ttttatgaggccagcatcattctgataccaaagccaggcagagacacaaccaaaaaagag
aattttagaccaatatccttgatgaacattgatgcaaaaatcctcaataaaatactgcca
aaccaaatccagcagcacatcaaaatgcttatccaccatgatcaagtgggcttcatccct
gggatgcaaggctggttcaatatacacaaatcaataaatgtaatccagcatataaacaga
gccaaagacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgacaaaatt
caacaacccttcatgctaaaaactctcaataaattaggtattgatgggacatacttcaaa
ataataagagctatctatgagaaacccacagccaatatcatactgaatgggcaaaaactg
gaagcattccctttgaaaactggcacaagacagggatga

>gi568815594f:106216548_106447689|GENSCAN_predicted_peptide_2|312_aa
MWGRDINNDYLAERSIEEVYYLWCLAGGDLEKELVNKEIIRSKPPICTLPNQSNLPHSNS
NNELSAAATLPLIIREKDTEYQLNRIILFDRLLKGAIHAKYDAIDKDTPIPTDRQIEVDI
PRCHQYDELLSSPEGHAKFRRVLKAWVVSHPDLVYWQALAYACMSAFIPKYLYNFFLKDN
SHVIQERFNWTYISTWLGKPQNDGRRQKALLTWQRQEKMRKKQKQKPLKNPSDLVRLIHY
YENSTGKSSSHDSITTPRSLPQHVGILEDTIQVEIWVGTQPNHVIYKIHVIIGSKGLFEK
SKGRLLVLMDCQ

>gi568815594f:106216548_106447689|GENSCAN_predicted_CDS_2|939_bp
atgtggggcagagatataaataatgattacctggcagaaagatctattgaagaagtgtat
tacctttggtgtttggctggaggtgacttggagaaagagcttgtcaacaaggaaatcatt
cgatccaaaccacctatctgcacactccccaaccagtctaatttacctcattcaaacagc
aataatgagttgtctgcagctgccacgctccctttaatcatcagagagaaggatacagag
taccaactaaatagaattattctcttcgacaggctgctaaagggagctattcatgccaag
tacgatgcaattgataaagacactccaattcctacagatagacaaattgaagtggatatt
cctcgctgtcatcagtacgatgaactgttatcatcaccagaaggtcatgcaaaatttagg
cgtgtattaaaagcctgggtagtgtctcatcctgatcttgtgtattggcaagccttggct
tatgcatgtatgtctgcttttattcccaaatacctgtataacttcttcttaaaagacaac
tcacatgtaatacaagagaggtttaattggacttacatttccacatggctggggaagccc
cagaatgatggcaggaggcaaaaggcacttcttacatggcagcggcaggagaagatgagg
aagaagcaaaagcagaaacccctgaagaacccgtcagatctcgtgagacttattcactat
tatgagaatagcacgggcaagagcagctcccatgattcaattaccacaccccggtccctc
ccacaacatgtgggaattctggaagatacaattcaagttgagatttgggtggggacacag
ccaaaccatgttatctataaaattcatgtgatcattggaagcaaaggattatttgagaaa
agtaagggaagactacttgtactgatggactgtcaataa

>gi568815594f:106216548_106447689|GENSCAN_predicted_peptide_3|106_aa
MFPGASHGSCLQRTWSNHSLAGSQCLCQHLDLLAMPQPVCLAVHSGQTPHSLIHPLPRHA
WLSLGRVASRPVARAEHSLPVQVDGTGPVGPSKTQAKAPLATEVST

>gi568815594f:106216548_106447689|GENSCAN_predicted_CDS_3|321_bp
atgttccctggtgccagccatggaagctgcttgcaacgcacctggtccaaccacagcctt
gcaggaagccagtgcctatgccagcacctggacctgcttgccatgccacagccagtgtgc
ctggctgtgcacagtggccagaccccacactcactcatacaccccttgccacgccatgcc
tggctctcccttggccgcgtggcatccaggccagtagcacgagctgagcacagcctgcca
gtccaagtggatggaacgggcccagtgggtcccagcaaaactcaggcaaaggcaccactg
gccacagaggtttccacctga

>gi568815594f:106216548_106447689|GENSCAN_predicted_peptide_4|604_aa
MSSVLIKGRHIDEKTHKEGDVKTGAKIEVMWPQAKEAKECQQAPETGKGTEGFLLKASKG
GVTLPTQASFLATNYIAKAKKPFTIGEDLILPAAKDICHEILGEDADQKLLTKGYASQPV
TVVTLQAITLMINKALLSKFMNLFILQCTSLTQKKTPPTTTRKTGLPKYLPLSLGTQAST
KTRGMELLHRAPALSLWLLLPLRLSAPDAAFQPPRPNAEERPRLVVSFPLPKLATKGHIA
REKEEVRSVFAWPPIVGDVRSPSARPPSLGSEEHLFPAVILSRKIFCRLLAKMANNDAVL
KRLEQKGAEADQIIEYLKQQVSLLKEKAILQATLREEKKLRVENAKLKKEIEELKQELIQ
AEIQNGVKQIPFPSGTPLHANSMVSENVIQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIE
KKGEKKEKKQQSIAGSADSKPIDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRT
VVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSPEKIEILAPPNGSVPG
DRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSN
SGIK

>gi568815594f:106216548_106447689|GENSCAN_predicted_CDS_4|1815_bp
atgtcgagcgttcttataaaagggagacacatagacgagaagacacacaaagaaggtgat
gtgaagacaggggcaaagattgaagtgatgtggccacaagccaaagaagccaaggaatgc
caacaggcaccagaaactggaaaaggaacagaaggatttttattgaaagcctccaaaggg
ggtgtgaccctgccaacacaagcatcattcttagcgactaactacatagctaaagctaag
aagccctttactatcggtgaagatttgatcctgcctgctgctaaagacatctgtcatgaa
attttaggagaggatgccgatcaaaagcttctcacaaaaggctatgcttcccagcctgtc
acagtggtcaccctgcaggctataacccttatgataaataaagctctcctttctaagttt
atgaacctcttcattcttcagtgtacctccctcacacaaaaaaagaccccacccactacg
acacggaaaactggattacccaaatacctgcctctgagtctggggacgcaggcaagcaca
aagacaagggggatggagcttctacacagggccccagcgctgtcgctgtggctgctgctg
ccgctacggcttagtgcaccagacgctgcatttcagccaccgcgacccaacgctgaggaa
agaccccgacttgtggtgtccttccccttgcccaaactggccacgaaaggacatatagcg
agagagaaagaggaagtgaggagcgtctttgcctggccgcccatcgtcggggatgtgagg
agcccctctgcccggccgcccagtctgggaagtgaggagcacctcttcccggccgtcatc
ctgtctaggaagattttctgccgtctcttggcaaaaatggcaaataatgatgctgttctg
aagagactggagcagaagggtgcagaggcagatcaaatcattgaatatcttaagcagcaa
gtttctctacttaaggagaaagcaattttgcaggcaactttgagggaagagaagaaactt
cgagttgaaaatgctaaactgaagaaagaaattgaagaactgaaacaagagctaattcag
gcagaaattcaaaatggagtgaagcaaataccatttccatctggtactccactgcacgct
aattctatggtttctgaaaatgtgatacagtctacagcagtaacaaccgtatcttctggt
accaaagaacagataaaaggaggaacaggagacgaaaagaaagcgaaagagaaaattgaa
aagaaaggagagaagaaggagaaaaaacagcaatcaatagctggaagtgccgactctaag
ccaatagatgtttcccgtctggatcttcgaattggttgcatcataactgctagaaaacac
cctgatgcagattctttgtatgtggaagaagtagatgtcggagaaatagccccaaggaca
gttgtcagtggcctggtgaatcatgttcctcttgaacagatgcaaaatcggatggtgatt
ttactttgtaacctgaaacctgcaaagatgaggggagtattatctcaagcaatggtcatg
tgtgctagttcaccagagaaaattgaaatcttggctcctccaaatgggtctgttcctgga
gacagaattacttttgatgctttcccaggagagcctgacaaggagctgaatcctaagaag
aagatttgggagcagatccagcctgatcttcacactaatgatgagtgtgtggctacatac
aaaggagttccctttgaggtgaaagggaagggagtatgtagggctcaaaccatgagcaac
agtggaatcaaataa

>gi568815594f:106216548_106447689|GENSCAN_predicted_peptide_5|363_aa
MESAGQWKFVSWFPMLRAKSILNPRGGLSSSSVKNELEDHKEGRKAISEIKSSCSSKQSE
EHKKVKVHMKEQLCQGERRLCGESIFKTGKAMTDPNKMIINLALFGMTQSGKSSAGNILL
GSTDFHSSFAPCSVTTCCSLGRSCHLHSFMRRGGLEVALQVQVLDTPGYPHSRLSKKYVK
QEVKEALAHHFGQGGLHLALLVQRADVPFCGQEVTDPVQMIQRTCLATNVMTIQQATLLS
NIQLFSGQNRLKDFKLNQPLSSVFGSNSKVQFLSQFKELLGHAWMNYTAILFTHAEKIEE
AGLTEDKYLHEASDTLKTLLNSIQHKYVFQYKKGKSLNEQRMKILERIMEFIKENCYQVL
TFK

>gi568815594f:106216548_106447689|GENSCAN_predicted_CDS_5|1092_bp
atggaatctgcaggccagtggaagtttgttagctggtttcccatgctgcgggcaaagagc
atactaaatccccgtggaggtctctctagcagcagtgtgaagaatgaattggaggaccat
aaggaaggcagaaaggccatttcagaaattaagtcctcatgttcaagcaaacaatcagaa
gaacataaaaaggtgaaagttcatatgaaagaacaactgtgccagggcgagagacgtctt
tgtggagaaagcattttcaagactggaaaagccatgacagaccccaacaagatgatcatc
aacttggccctctttggcatgactcagagtggaaaaagttctgctggaaacattctgctg
ggaagcacagactttcacagcagctttgctccctgttctgtgaccacatgttgtagcctg
ggccgcagttgtcacctccacagcttcatgcgtcgaggtgggctagaggtagccctgcag
gtccaggtgttggacactccaggttatccacacagcaggctgagcaagaagtatgtgaaa
caggaagtcaaagaggctctggcacatcacttcgggcaagggggtctccaccttgcactc
ctggttcagagagcagatgtgcctttctgtgggcaggaagtaactgacccagtccagatg
atccagagaacatgtttggccactaacgtgatgactattcagcaagcaacactactttca
aatattcaactattttctggccaaaatcgacttaaagattttaagctaaatcaaccactc
tcttctgtttttggcagtaattcaaaagtgcaatttctctcacagtttaaggaacttctt
ggacatgcttggatgaattacacagccattctttttacccatgcagaaaaaatagaagag
gctgggcttactgaagataaatatttacatgaggcctctgataccctgaaaacgctgcta
aattctattcagcacaaatacgttttccagtacaaaaaaggaaaatcactcaatgaacaa
agaatgaaaatcttagaaagaatcatggaatttataaaagagaactgttaccaagttctt
acatttaaataa

>gi568815594f:106216548_106447689|GENSCAN_predicted_peptide_6|87_aa
MLWVKRWRKELQPFGDPRPGSSPSQGCDALFGTLQFLASQSFQSPLHFPVPAGEAACSAS
APAAALQRAGTHAGIWSCPPCGIRQCV

>gi568815594f:106216548_106447689|GENSCAN_predicted_CDS_6|264_bp
atgttgtgggtgaagagatggagaaaagagctgcagccctttggggaccccaggcctggg
agctccccaagccagggctgtgatgccctctttgggaccctgcagttcctggcatctcaa
agcttccagtcaccactgcatttcccagtgccagctggggaagctgcttgcagtgcatct
gctccagctgcagccttgcagagagctggcacccatgccggcatctggagctgcccaccc
tgtggcatcagacagtgtgtctga

>gi568815594f:106216548_106447689|GENSCAN_predicted_peptide_7|53_aa
MFAKSRWKTEIQNKSVSQLLLFENGNFQGTSQNFRKPCEDVLASASTAAMIVS

>gi568815594f:106216548_106447689|GENSCAN_predicted_CDS_7|162_bp
atgtttgccaaaagcagatggaaaacagaaattcaaaacaagtccgtatctcagcttctc
ttgtttgaaaatggaaacttccaaggcacctctcagaatttccggaaaccatgtgaagat
gtgcttgcttctgcttcaactgctgctatgattgtttcctga

>gi568815594f:106216548_106447689|GENSCAN_predicted_peptide_8|429_aa
MGDFNTALSTLDRSTRQKVNKDIQELNSALHQADLIDIYRTLHPKSTEYAFFSAPHHTYS
KTDHIVGSKALLSKCKRTEIITNCLSDHSAIKLELRIKKLTQNCSTTWKLNNLLLNDYWV
HNEMKAEIKMFFETDKNKDTTYQNLWDTFKAVYRGKFIALNAHKRKQERSKIDTLTSQLK
ELEKQEQTHSKASRRQEVTKIRAELKEMEMQNPFKKLLNPGAVLEVLARAIRQKKEINGI
QIGKEEVKLFLFADDMIVYLENPTVSAQNLLKLIGNFSKVSGYKINVQKSQAFLYTNNRQ
TKRQIMSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLNEVKEDINKWKNVPFPCVG
RTNKMAILPKVIYRFSAIPIKLPMTFFTELEKTTFNFIWNQERAGIAKSILSQKNKAGGI
TLPDFKTVL

>gi568815594f:106216548_106447689|GENSCAN_predicted_CDS_8|1290_bp
atgggagactttaacacggcactgtcaacattagacagatcaacaagacagaaagttaac
aaggatatccaggaattgaactcagctcttcaccaagcagacctaatagacatctacaga
actctccaccccaaatcaacagaatacgcattcttctcagcaccacatcacacttattcc
aaaactgaccacatagttggaagtaaagcactcctcagcaaatgtaaaagaacagaaatt
ataacaaactgtctctcagaccacagtgcaatcaaactagaactcaggattaagaaactc
actcaaaactgctcaactacatggaaactgaacaacctgctcctgaatgactactgggta
cataacgaaatgaaggcagaaataaagatgttctttgaaaccgacaagaacaaagacaca
acataccagaatctctgggacacattcaaagcagtgtatagagggaaatttatagcacta
aatgcccacaagagaaagcaggaaagatctaaaattgacacactaacatcacaattaaaa
gaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaagtaactaag
atcagagcagaactgaaagaaatggagatgcaaaatcccttcaaaaaattactgaatcca
ggagctgtgttggaagttctggccagggcaatcaggcagaagaaggaaataaatggtatt
caaataggaaaagaggaggtcaaattgttcctgtttgcagatgacatgattgtatatcta
gaaaaccccactgtctcagcccaaaatctccttaagctgataggcaacttcagcaaagtc
tcaggatacaaaatcaacgtgcaaaaatcacaagcattcttatacaccaataacagacaa
acaaagagacaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatac
ctaggaatccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactg
ctcaatgaagtaaaagaggacataaacaaatggaagaacgttccattcccatgtgtagga
agaaccaataaaatggccatactgcccaaggtaatttatagattcagtgccatccccatc
aagctaccaatgactttcttcacagaattggaaaaaactactttcaatttcatatggaac
caagaaagagccggcattgccaagtcaatactaagccaaaagaacaaagctggaggcatc
acactacctgacttcaaaactgtactataa

>gi568815594f:106216548_106447689|GENSCAN_predicted_peptide_9|210_aa
MVMAIVGDCGNIGGSGGHGGYYGGSYESGSVTVVVIVKAVMAFVVAFCGGGTEPNSSLMK
VEAVTLENNTCKDTERNDLVQMPPLLIPRQTGSGVDLQQTPTDLQLRVLTVRRKTNKQKG
HPHQNPVRTSPSSKTKENDFDELGEEGFRRSNYSELKEEVQTHDKEVKNLEKKLDKWLTR
ITNAEKSLKDLMELKTKARELRDECTSLSS

>gi568815594f:106216548_106447689|GENSCAN_predicted_CDS_9|633_bp
atggtaatggcgatagttggtgattgtggtaacattggtggtagtggtggtcatggtggt
tattatggtggcagttatgagagtggcagtgtgacagtagtggtaatagtaaaggcagtt
atggcatttgtggttgctttttgtggtggcggcactgaacccaactcctctctaatgaaa
gtagaagcagtcaccttggaaaataacacctgcaaagatacagaaagaaacgatttggtc
cagatgcctccgctgctgatacccaggcaaacagggtctggagtggacctccagcaaact
ccaacagacttgcagctgagggtcctgactgttagaaggaaaactaacaaacagaaagga
catccacaccaaaaccctgttcgtacgtcaccatcatcaaagaccaaagagaacgacttt
gacgaattgggagaagaaggcttcagacgatcaaactactccgagctaaaggaggaagtt
caaacccatgacaaagaagttaaaaaccttgaaaaaaaattagacaaatggctaactaga
ataaccaatgcagagaagtccttaaaggacctgatggagctgaaaaccaaggcacgagaa
ctacgtgacgaatgcacaagcctcagtagctga