GENSCAN 1.0	Date run:  8-Nov-116	Time: 02:40:05

Sequence gi568815593r:178503620_178723416 : 219797 bp : 45.89% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +   3524   3563   40                              -2.36
 1.01 Init +  11668  11712   45  0  0   79  101    18 0.069   1.00
 1.02 Intr +  15594  15737  144  2  0  110   37    75 0.052   5.08
 1.03 Term +  18911  19132  222  1  0   25   47   149 0.057   1.42
 1.04 PlyA +  19389  19394    6                              -0.45

 2.00 Prom +  19570  19609   40                              -5.46
 2.01 Init +  22148  22213   66  1  0   67   98    69 0.594   6.87
 2.02 Intr +  38864  39013  150  1  0   62   27   135 0.242   5.16
 2.03 Intr +  40882  40933   52  0  1   88   77     5 0.041  -2.12
 2.04 Intr +  50415  50461   47  1  2   81  105    51 0.186   4.23
 2.05 Intr +  54932  55042  111  1  0   72   85    33 0.232   1.98
 2.06 Term +  56843  57133  291  1  0   37   52   161 0.246   2.74
 2.07 PlyA +  58935  58940    6                               1.05

 3.00 Prom +  63037  63076   40                              -5.46
 3.01 Init +  72356  72529  174  1  0   84   63   109 0.922   7.35
 3.02 Intr +  73521  73859  339  2  0   19    9   278 0.608   8.67
 3.03 Term +  73864  74265  402  0  0   40   52   190 0.680   5.75
 3.04 PlyA +  75235  75240    6                              -1.75

 4.17 PlyA -  75315  75310    6                               1.05
 4.16 Term -  76258  76172   87  1  0   70   42    82 0.057  -0.54
 4.15 Intr -  79222  79125   98  2  2   54   77    66 0.066   1.83
 4.14 Intr -  81941  81623  319  2  1    7   35   171 0.125  -0.77
 4.13 Intr -  86632  86285  348  1  0   82   83   475 0.669  41.95
 4.12 Intr - 108926 108807  120  2  0   63   26   137 0.126   5.69
 4.11 Intr - 109271 109177   95  0  2  101  115     3 0.997   3.98
 4.10 Intr - 110020 109854  167  0  2   82   87    54 0.999   4.30
 4.09 Intr - 110224 110108  117  0  0   67   89    81 0.942   5.68
 4.08 Intr - 113329 113263   67  2  1  109  103    78 0.945   9.36
 4.07 Intr - 119797 119637  161  0  2   71   27   105 0.117   2.33
 4.06 Intr - 124236 124144   93  2  0   94   99    -4 0.051   0.38
 4.05 Intr - 129371 129333   39  1  0   24   91    95 0.031   0.74
 4.04 Intr - 149577 149506   72  2  0   45   80   136 0.046   7.02
 4.03 Intr - 155623 155494  130  2  1   21  -16   217 0.027   4.35
 4.02 Intr - 158817 158723   95  2  2   80   67    23 0.158  -0.99
 4.01 Init - 159044 159001   44  2  2  119   52    68 0.357   4.68
 4.00 Prom - 167460 167421   40                              -3.26

 5.09 PlyA - 171136 171131    6                               1.05
 5.08 Term - 180623 180499  125  0  2   76   41    94 0.944   2.05
 5.07 Intr - 181863 181759  105  1  0   73  110    50 0.858   5.89
 5.06 Intr - 185955 185874   82  0  1   -8  113    50 0.287  -2.89
 5.05 Intr - 191328 191201  128  1  2  131   80    87 0.877  12.60
 5.04 Intr - 191465 191382   84  0  0   75   92    35 0.748   2.39
 5.03 Intr - 191979 191668  312  1  0   72   72   165 0.942   9.46
 5.02 Intr - 192562 192478   85  1  1   77   92    63 0.353   4.99
 5.01 Init - 206038 206036    3  1  0   64  103     0 0.014  -0.90
 5.00 Prom - 208296 208257   40                              -5.76

 6.02 PlyA - 208371 208366    6                               1.05
 6.01 Term - 210002 208441 1562  0  2  114   43   571 0.883  45.76

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 100138  99998  141  1  0   79   44    91 0.856   1.73
S.002 Sngl - 138787 138566  222  1  0  100   55   142 0.870   7.33


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593r:178503620_178723416|GENSCAN_predicted_peptide_1|136_aa
MPRQFPSAVCLPQEAPHFVDEETVGSGAERCQHRAQASDREASALSTFTGHKANGCCKPS
CCGPTTVPARDCDEPVVSTCNEARGSLEKECTQGQAMRLYLRTTGTVVEGTIDALSVILP
QSDDRTNTKRCDPRKR

>gi568815593r:178503620_178723416|GENSCAN_predicted_CDS_1|411_bp
atgcccaggcagtttccttctgcagtctgccttccccaggaagcgccccattttgtagat
gaggaaactgtgggctcaggggcagaacgttgtcagcacagagcccaggcctcagaccgg
gaggccagtgccctgtctaccttcacaggccataaagccaatggctgctgcaaacccagc
tgctgtgggcccacaactgtgcctgcccgagattgtgacgagccggtggtcagcacatgt
aatgaagcaagggggtcactggagaaagaatgtacccaagggcaggcaatgcgcttgtat
ctgaggacaacggggacagtggtggagggcacgatagacgcgctgtctgtgatcctccca
cagtctgatgacaggaccaacaccaaaagatgtgatccaagaaagcgctaa

>gi568815593r:178503620_178723416|GENSCAN_predicted_peptide_2|238_aa
MEKDNVSKAHRKNFINMKNEDQEGPALVTAAIPLADRGKEQKDQSERVLETNQKALTSER
VKTTGVERNVEEKTARPVATPAVSTLRPRGGKPRHKEDKCEVTEPTSVPAHNFMLVVAGG
NPLNGFGVSQMGRDSQFKRHTQLLHQYHPANRVRLLCWKPTREPARVNVGKKGPRPVHED
DSLTPQSTFRTMLFSAIPSKRRPNAGARRELNLHLPGGQTHSDGASRAVRIFASPSNF

>gi568815593r:178503620_178723416|GENSCAN_predicted_CDS_2|717_bp
atggaaaaagataatgtgtccaaggctcataggaaaaacttcattaacatgaaaaatgaa
gatcaggaagggcctgcgctggtcactgcagccatccctctggctgaccgggggaaagaa
cagaaagaccagagtgagagagtgctggaaacaaaccagaaggctcttacatcggaaagg
gtgaaaactactggtgtggaaagaaatgtggaagagaaaacagcaagaccggtggccacc
cccgctgtgagtactctgaggcccagaggtggaaaaccgaggcacaaggaggataagtgt
gaggtcacggagccgacttctgtgccagctcacaatttcatgctggtggttgctggcggc
aacccactaaacggatttggtgtctcacaaatggggcgtgactcccagttcaaaagacac
acacagctcctccaccaataccacccagcaaaccgagtccgtttactttgctggaaaccg
accagagagcctgccagggtcaatgtgggaaagaaaggccccaggccagtgcacgaagac
gacagcctgacaccccagtccaccttccggaccatgctgttctcagcaatcccaagcaaa
cggcggccgaacgcaggagccagaagggagctcaaccttcacttacctggggggcagaca
cattcggatggagcttcccgagcagtccggatcttcgctagtccgtccaacttctga

>gi568815593r:178503620_178723416|GENSCAN_predicted_peptide_3|304_aa
MDKNPTQIGLDSDVERGSVTKPQCFWQSLNTPSDCVSPCAASRCWELQLTAVGGDFAKAQ
RVPALPSGDPAGGPEPGARRAVHSRVLAGPASSRALSLRLVVPACWPRLPSSRDTSPVGS
GPPHNDLCHLIRLFKDPIPKGGRIRRPRGEDFATGRRHTIQPMTPPPRRGAGEAQALTED
RTRGIRWGFQQGLARGAWGGDLGNSPGPSQNPRLPPAAWMGSLYQPRPERVSRGLLWPRC
APAGQPQKGHCSVLTKTSEADSASPFPEEEAEVRKGQPTCPRTLAGSEAALDSDPGFPIL
KPTA

>gi568815593r:178503620_178723416|GENSCAN_predicted_CDS_3|915_bp
atggataaaaacccaactcaaattggcctggacagtgatgtcgagaggggctcggtcacg
aagccgcagtgcttttggcagtccctcaataccccttcagactgtgtttctccttgcgca
gcaagtcgatgctgggagctccaacttacagccgttgggggtgattttgcgaaggcccag
cgggtccctgctctgccgtccggggatcccgcgggtggtccggagcccggggcgcggcgc
gccgttcattcccgcgtcctggcggggcctgcttcttcccgagccctctccctgcggctg
gtggtcccagcgtgctggccgcgtctcccctcttctcgggacaccagccctgttggatca
gggcccccccacaacgacctgtgccacctcatccgcctctttaaagaccccatccccaag
ggcggccgcatccggaggcccaggggtgaggacttcgccacgggaaggaggcacacgatt
cagcccatgacaccgccacctcggcgtggtgctggggaagctcaggcactcaccgaggac
aggacccggggaatccgctggggctttcagcagggcctggcgcgcggggcctggggagga
gacctggggaacagcccagggccctcccagaacccgcgcctgccccccgctgcctggatg
gggtctctgtaccagcccagaccagagcgagtgtcaagggggctcctctggccgcgctgc
gcccccgcggggcagccccagaagggccattgctcagtcctcaccaagaccagcgaggcg
gattcggccagcccctttccagaagaggaagccgaggttcggaaaggtcaaccaacttgt
cccaggacgctggccggttcagaggcagctctggactcagacccaggcttcccaattcta
aagcccactgcatga

>gi568815593r:178503620_178723416|GENSCAN_predicted_peptide_4|683_aa
METSLTPMALPLVRRLMCPGSDKGLRLGREEGSLATPIEHHVDQGAVHVEDPAEALAGIK
HQQLAAAIIVTSIIISTVTIVTKAACRWVCVIHNSQDMETTDMSIDGGMDEEACGSDNPD
GYYVTVRAPTLTLIFLMLHTYTGELPEGPQNCRIPYLRCGIPKELTVLIGIAEKAGDMKA
IVEVTSGRGDLIVAHKRTGIVNHITSLKNLIDEIVDTLGEGAFGKVVECIDHGMDGMHVA
VKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLGLSTY
DFIKENSFLPFQIDHIRQMAYQICQSINFLHHNKLTHTDLKPENILFVKSDYVVKYNSKM
KRDERTLKNTDIKVVDFGSATYDDEHHSTLVSTRHYRAPEPLPQQHRPLGESTRDERAMG
PGERAGGGGDAGKGNAAGGGGGGRSATTAGSRAVSALCLLLSVGSAAACLLLGVQAAALQ
GRVAALEEERELLRRAGPPGALDAWAEPHLERLLREHQPGLWSVTPASSRDVECYSSVIQ
GCGVLPPASTRDVECYPSVNQGCGVLPTHQSGPRSVTLESAGAIECYLSVSRGHKCYPRV
SRGVLPQCLLGPWNVSVVTPEEASWGMFSRGVFSEDVSGLVGESGEYPKSSGPGMPHGRP
GGNNDLALSSSFFCECGHPCRHL

>gi568815593r:178503620_178723416|GENSCAN_predicted_CDS_4|2052_bp
atggagacctccctgacccccatggccttgcccctggtgcgcaggctgatgtgtccaggc
tcagataagggcctgcgtctggggagagaggagggttcactagccacccccatagagcat
cacgtggaccagggagcagtgcatgtagaagacccagcagaagctctggcaggtattaaa
caccagcagctggcggccgccatcattgtcacatccatcatcatctccaccgtgaccatc
gtcacaaaggctgcctgcagatgggtgtgtgttattcacaatagccaagatatggaaaca
accgacatgtccatcgacggaggaatggatgaagaagcatgtggatctgacaacccagat
ggctactacgtgactgtcagggctccgactttgaccctaatatttctcatgttacatact
tacacgggggaactgcctgagggtcctcagaactgcagaataccttatttgagatgcggc
attccaaaagaactcactgtcctgattgggatagcagagaaagctggggacatgaaagct
atcgtggaagtcacaagcggaagaggagatctcatagtagcacacaagagaacaggcatt
gtaaaccacatcaccagtttaaagaatctgattgatgaaatcgtggacactttgggtgaa
ggagcctttggcaaagttgtagagtgcattgatcatggcatggatggcatgcatgtagca
gtgaaaatcgtaaaaaatgtaggccgttaccgtgaagcagctcgttcagaaatccaagta
ttagagcacttaaatagtactgatcccaatagtgtcttccgatgtgtccagatgctagaa
tggtttgatcatcatggtcatgtttgtattgtgtttgaactactgggacttagtacttac
gatttcattaaagaaaacagctttctgccatttcaaattgaccacatcaggcagatggcg
tatcagatctgccagtcaataaattttttacatcataataaattaacccatacagatctg
aagcctgaaaatattttgtttgtgaagtctgactatgtagtcaaatataattctaaaatg
aaacgtgatgaacgcacactgaaaaacacagatatcaaagttgttgactttggaagtgca
acgtatgatgatgaacatcacagtactttggtgtctacccggcactacagagctcccgag
cctctgccccagcagcaccgccccctcggagagtccacgcgcgacgaacgcgccatgggc
ccaggcgagcgcgccggtggcggcggcgacgcggggaagggcaatgcggcgggcggcggc
ggcggagggcgctcggcgacgacggccgggtcccgggcggtgagcgcgctgtgcctgctg
ctctccgtgggctcggcggctgcctgcctgctgctgggtgtccaggcggccgcgctgcag
ggccgggtggcggcgctcgaggaggagcgggagctgctgcggcgcgcggggccgccaggc
gccctggacgcctgggccgagccgcacctggagcgcctgctgcgggagcatcaaccaggg
ctgtggagtgttactccagcgtcatccagggacgtggagtgttactccagcgtcatccag
ggctgtggagtgttacccccagcatcaaccagggacgtggagtgttaccccagtgtcaac
cagggctgtggagtgttacccacacatcagtcagggccgcggagtgttaccctagagtca
gctggggccatagagtgttacctgagcgtcagccggggccacaagtgttaccccagggtc
agccgtggagtgttaccccagtgtctgctggggccatggaatgtttctgttgtcacccca
gaggaggcttcctggggaatgttctcacggggagtgttctcagaggatgtctctggcctg
gttggggagtctggggagtaccccaagtcctcgggacctggaatgcctcatggcagacct
ggtggaaacaatgatttggctttgagcagcagctttttctgcgagtgtggacatccttgt
agacatctgtaa

>gi568815593r:178503620_178723416|GENSCAN_predicted_peptide_5|307_aa
MIVILPTETTINIQKMEQENTAQGSEKPSVQSVKPWSDQEIRSFLQEWEFLEREVYRVKK
KYHIVSKAIAQRLKQRGINKSWKECLQMLISLQDLYFTIQEANQRPRCQPLPCPYGEALH
RILGYRWKISVFSVIILRTLFVDLFRMDMALGLGEVTSKDSGPPCADVVNLAPPEHPPQA
YGVPIVFQEPMWAPTPVIYVENPQLLNTSVPTTHLDPGNDQRMGSGTRWAHENDSLLIQR
RYWNTSDWGKEDMCVTQERSCSSQVAVKKGRNEKRTKQNFYSSYYHMDTSTHILILPVTT
DLCSSVQ

>gi568815593r:178503620_178723416|GENSCAN_predicted_CDS_5|924_bp
atgatagtaatacttcccactgaaactaccataaacatccagaaaatggagcaggaaaac
acagcccagggatcagaaaagccctcagtccagtcagttaaaccttggagtgaccaggaa
atccggagtttcctgcaagaatgggaatttcttgaacgtgaggtgtacagggtgaagaag
aagtatcacatagtatcaaaagcaattgctcagcgtctcaagcagaggggtatcaacaag
agctggaaggaatgtctccagatgctaataagcttgcaggacttatacttcactattcag
gaggccaaccagaggccaaggtgccaacccttgccatgtccttatggtgaggccctgcac
aggattctggggtacagatggaagatcagcgtcttctcagtaataattctgaggactttg
ttcgtggacttgttcagaatggacatggccctggggctgggtgaggtcacaagcaaggat
tcaggtcctccctgtgcagatgtggttaacctcgcacctcccgagcacccgccccaggcc
tatggcgttcccatagtctttcaggagccgatgtgggccccaacacctgtgatctatgtg
gaaaatcctcagctgctgaacacgtctgttccaactacacatctggacccgggaaatgac
cagagaatgggttccgggacccgctgggcccacgagaatgacagtttgctcattcagcgc
aggtactggaatacctcagactggggtaaagaagacatgtgtgttacacaggaacggagc
tgcagctcacaagtagcagtgaaaaagggaagaaatgaaaagagaacaaaacagaatttc
tacagctcctattaccacatggacacaagtacccacatcctcatccttcctgttaccaca
gatctgtgctcttctgtacagtaa

>gi568815593r:178503620_178723416|GENSCAN_predicted_peptide_6|520_aa
XSKSSHKTTKSTQTQDSSFQGLILKRSNRNVPWDLKLEKPYIYEGRLEKKQDKKGSFQIV
SATHKKIPTIERSHKNTELSQNFSPKSVLIRQQILPREKTPPKCEIQGNSLKQNSQLLNQ
PKITADKRYKCSLCEKTFINTSSLRKHEKNHSGEKLFKCKECSKAFSQSSALIQHQITHT
GEKPYICKECGKAFTLSTSLYKHLRTHTVEKSYRCKECGKSFSRRSGLFIHQKIHAEENP
CKYNPGRKASSCSTSLSGCQRIHSRKKSYLCNECGNTFKSSSSLRYHQRIHTGEKPFKCS
ECGRAFSQSASLIQHERIHTGEKPYRCNECGKGFTSISRLNRHRIIHTGEKFYNCNECGK
ALSSHSTLIIHERIHTGEKPCKCKVCGKAFRQSSALIQHQRMHTGERPYKCNECGKTFRC
NSSLSNHQRIHTGEKPYRCEECGISFGQSSALIQHRRIHTGEKPFKCNTCGKTFRQSSSR
IAHQRIHTGEKPYECNTCGKLFNHRSSLTNHYKIHIEEDP

>gi568815593r:178503620_178723416|GENSCAN_predicted_CDS_6|1563_bp
ngatcgaagagcagtcataaaaccacaaagtcaacgcaaacacaagactcttcatttcag
ggactgatactgaaaagatccaacaggaatgtaccttgggatttgaaattagaaaagcct
tacatatatgaaggcagattagagaaaaagcaggataaaaagggaagttttcagatagtt
tcagccacccacaaaaaaatccccactatagaaagaagccataaaaatactgaattgagc
caaaacttcagcccaaagtcagtgcttattaggcaacagatacttcccagagaaaaaaca
ccaccaaaatgtgaaatacaaggaaacagcctcaaacagaattcacaattacttaatcaa
ccaaaaattacagcagataaacgctataaatgtagtctgtgtgaaaaaaccttcattaac
acttcatcccttcgtaaacatgagaaaaaccatagtggagagaaactatttaagtgtaaa
gaatgttcaaaagcctttagccaaagttcagctcttattcaacatcaaataacgcatact
ggagagaaaccctacatatgtaaagaatgtgggaaagcctttactctcagtacatccctt
tataaacatctaagaacccatactgtggagaaatcctacagatgtaaagaatgtggtaaa
tccttcagccgaaggtcaggcctttttatacatcaaaaaattcatgctgaagaaaaccct
tgtaagtataatccgggtaggaaggcatctagttgcagcacatccctttctggatgtcaa
agaattcattctagaaagaagtcctacttatgtaatgaatgtggcaacacctttaagtct
agctcatcccttcgttatcatcagagaattcacactggagagaagccttttaaatgtagt
gaatgtgggagagccttcagccagagtgcctctcttattcaacatgaaagaattcacacc
ggagaaaagccctatagatgcaatgaatgtgggaaaggctttacttctatttcacgactt
aatagacaccgaatcattcatactggagagaagttttataattgtaatgaatgtggtaaa
gccttaagctcccactcaacacttattattcacgagcgaattcatactggagaaaaacca
tgtaaatgtaaagtatgtggaaaagccttcagacagagttcagctctcattcaacatcag
agaatgcatactggagaaagaccctataaatgtaacgagtgtgggaaaacattcaggtgt
aactcatcacttagtaatcaccagagaattcatactggagagaaaccatatcgatgtgag
gaatgtgggatatcttttggccaaagttcagctcttattcagcatcgaaggattcataca
ggagaaaaaccctttaaatgtaatacatgtggaaaaacttttagacaaagctcatcacgt
attgcacatcagagaattcatactggagagaaaccctatgaatgtaatacatgtgggaaa
cttttcaaccataggtcatcccttactaatcattataaaattcatatcgaagaggacccc
tag