GENSCAN 1.0	Date run:  5-Nov-116	Time: 00:26:07

Sequence gi568815593r:17253876_17454423 : 200548 bp : 41.45% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1653   1753  101  2  2   65   53    81 0.185   2.08
 1.02 Intr +  15618  15726  109  0  1  100   75    33 0.168   2.57
 1.03 Term +  21333  22025  693  2  0   88   48   746 0.493  63.18
 1.04 PlyA +  22935  22940    6                               1.05

 2.03 PlyA -  23507  23502    6                               1.05
 2.02 Term -  25395  25061  335  1  2   47   41   239 0.685   8.89
 2.01 Init -  33969  33801  169  0  1   72   75    76 0.228   4.45
 2.00 Prom -  34603  34564   40                              -7.85

 3.00 Prom +  34731  34770   40                              -8.65
 3.01 Init +  35965  36025   61  0  1   82   19    85 0.485   2.49
 3.02 Intr +  38558  38787  230  0  2   88   77   205 0.706  16.07
 3.03 Intr +  46665  46751   87  2  0  108   91    95 0.705  11.05
 3.04 Term +  52505  52948  444  1  0   72   54   147 0.149   3.95
 3.05 PlyA +  53165  53170    6                               1.05

 4.02 PlyA -  53463  53458    6                               1.05
 4.01 Sngl -  58013  57780  234  2  0   97   36   248 0.976  13.44
 4.00 Prom -  71384  71345   40                              -6.05

 5.04 PlyA -  72223  72218    6                               1.05
 5.03 Term -  74717  74585  133  1  1   89   52   130 0.794   6.08
 5.02 Intr -  81095  81009   87  1  0   49   99    48 0.063   0.17
 5.01 Init -  88832  88705  128  2  2   81   76    64 0.321   4.18
 5.00 Prom -  99796  99757   40                              -3.65

 6.02 PlyA -  99825  99820    6                              -0.45
 6.01 Sngl - 100759  99998  762  1  0   78   46   798 0.999  70.46
 6.00 Prom - 104862 104823   40                              -5.75

 7.09 PlyA - 105135 105130    6                               1.05
 7.08 Term - 106224 105968  257  1  2   20   36   311 0.979  13.86
 7.07 Intr - 111692 111518  175  2  1    8   33    89 0.036  -6.01
 7.06 Intr - 112198 112085  114  1  0   80   77   158 0.680  13.62
 7.05 Intr - 114263 114146  118  1  1   44   82    47 0.619  -0.75
 7.04 Intr - 115514 115421   94  0  1   77   55   115 0.523   5.20
 7.03 Intr - 124952 124859   94  2  1   19  117    80 0.255   2.62
 7.02 Intr - 126635 126600   36  2  0  120   95    30 0.445   4.44
 7.01 Init - 131114 130974  141  2  0   81   75    91 0.749   7.28
 7.00 Prom - 141710 141671   40                              -6.35

 8.00 Prom + 146446 146485   40                              -4.95
 8.01 Init + 158962 159150  189  0  0   85   98    62 0.824   6.15
 8.02 Term + 159279 159434  156  2  0  105   44    64 0.603   0.65
 8.03 PlyA + 160496 160501    6                               1.05

 9.00 Prom + 160871 160910   40                              -5.85
 9.01 Sngl + 161143 161790  648  0  0   31   42   392 0.887  24.82
 9.02 PlyA + 161925 161930    6                               1.05

10.03 PlyA - 164033 164028    6                               1.05
10.02 Term - 166221 166124   98  1  2  114   34    93 0.777   3.65
10.01 Init - 166850 166646  205  2  1   92    2   158 0.694   6.66
10.00 Prom - 171685 171646   40                              -4.75

11.03 PlyA - 172147 172142    6                               1.05
11.02 Term - 176690 176153  538  1  1   58   45   190 0.223   4.43
11.01 Init - 180427 180342   86  1  2   74   83    43 0.539   2.74
11.00 Prom - 180941 180902   40                              -6.85

12.05 PlyA - 181225 181220    6                               1.05
12.04 Term - 182327 182182  146  0  2   71   49   176 0.968   9.09
12.03 Intr - 191791 191585  207  2  0   83   75    65 0.050   2.83
12.02 Intr - 196622 196448  175  2  1   50   43   103 0.080   0.59
12.01 Intr - 199646 199518  129  2  0   72   94    51 0.229   4.07

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 129972 129853  120  0  0   66   42   125 0.807   3.19
S.002 Init + 190311 190417  107  2  2   70   68   104 0.864   6.34


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593r:17253876_17454423|GENSCAN_predicted_peptide_1|300_aa
MYFETSCPTLDAWCRSGSVATCNTSLTTLDGVTGPGCSDQLTVLEWHTLFSLHRKAELYH
ISSRIAVSSQNSKMGGKLSKKKKGYNVNDEKAKEKDKKAEGAATEEEGTPKESEPQAAAE
PAEAKEGKEKPDQDAEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAPEQE
QAAPGPAAGGEAPKAAEAAAAPAESAAPAAGEEPSKEEGEPKKTEAPAAPAAQETKSDGA
PASDSKPGSSEAAPSSKETPAATEAPSSTPKAQGPAASAEEPKPVEAPAANSDQTVTVKE

>gi568815593r:17253876_17454423|GENSCAN_predicted_CDS_1|903_bp
atgtattttgaaacctcttgccccacgttggatgcctggtgtcgatcaggaagtgttgca
acgtgtaacacatcactcaccactcttgacggtgttacaggcccaggttgctctgatcaa
ctcacagtgctcgaatggcacactctcttctctcttcaccgaaaagcagaactttatcac
atttcttccagaatagctgtttctagccagaactccaagatgggaggcaagctcagcaag
aagaagaagggctacaatgtgaacgacgagaaagccaaggagaaagacaagaaggccgag
ggcgcggcgacggaagaggaggggaccccgaaggagagtgagccccaggcggccgcagag
cccgccgaggccaaggagggcaaggagaagcccgaccaggacgccgagggcaaggccgag
gagaaggagggcgagaaggacgcggcggctgccaaggaggaggccccgaaggcggagccc
gagaagacggagggcgcggcagaggccaaggctgagcccccgaaggcgcccgagcaggag
caggcggcccccggccccgctgcgggcggcgaggcccccaaagctgctgaggccgccgcg
gccccggccgagagcgcggcccctgccgccggggaggagcccagcaaggaggaaggggaa
cccaaaaagactgaggcgcccgcagctcctgccgcccaggagaccaaaagtgacggggcc
ccagcttcagactcaaaacccggcagctcggaggctgccccctcttccaaggagaccccc
gcagccacggaagcgcctagttccacacccaaggcccagggccccgcagcctctgcagaa
gagcccaagccggtggaggccccggcagctaattccgaccaaaccgtaaccgtgaaagag
tga

>gi568815593r:17253876_17454423|GENSCAN_predicted_peptide_2|167_aa
MEILQGGPASWVCHLDSHKGPHTQSPVLDRMLCSLEILKSLSKAQPFLQSVLPVGPNLRL
DSREKEDSPRLGNDIPGVPVPPLPPYCQEQTEDGLLSGLRPGRAILGCMAHASSWGPESI
PIMQRRHQLRKRIFKVEGQAWHPCTSSSGFLIVSSLQYAQRHPVNER

>gi568815593r:17253876_17454423|GENSCAN_predicted_CDS_2|504_bp
atggagatcttgcagggaggaccagcttcatgggtgtgccacctggacagtcacaaagga
ccccacactcagagtcctgtgctggatcgaatgctttgctctcttgaaattcttaagagt
ttaagcaaggcccagccctttttgcagtcagtcctgcctgtaggacctaacctacgtctt
gattccagagagaaagaagattctccaagactggggaatgacattccgggagtgccagta
ccacctctgcctccatattgccaggaacagactgaagatggccttctctcagggttgaga
ccaggaagggccatcctgggatgcatggcacatgccagctcttggggaccagagtccatt
cccatcatgcagaggcggcatcagctacggaaaagaatcttcaaagtggagggacaagcc
tggcatccctgtacaagttcctctggattcctcatagtttcctccttgcagtacgcacaa
aggcacccagtaaatgaacgttag

>gi568815593r:17253876_17454423|GENSCAN_predicted_peptide_3|273_aa
MKIRFPQSRGGWRALGLMAKDNDSVLFLEMVSGLREELEESLVWCLRTQEDQGSGAIVSR
HDRCLKTSRARKEHTPGEPATQMQKLVTHVSTPSADKVSFIASSDSPSHSLTRGGGVETS
GACRSQAILLVRLTSQLFRAVSWAGCSLPWPVSGVLSKHACRPHYSTQPTGPGRAASLPS
KGAQLELEEMLVPRKMSISPLESWLTACCLLPRLDAQTPGTAAPAQFYECLPSQMGEGAK
QEDEKAWDTTQMQSKNVLKTRRQKMNHHKHRKL

>gi568815593r:17253876_17454423|GENSCAN_predicted_CDS_3|822_bp
atgaagattcgatttccgcagtcccgtgggggatggcgagccctgggcctaatggctaaa
gataacgactccgtgttgttccttgagatggtttcgggtttacgggaagagttagaagag
agtcttgtgtggtgtttgaggactcaggaagatcagggttctggggcgatagtttctaga
cacgatagatgcctgaaaaccagcagggcccgaaaggagcatacccctggggaaccagca
actcaaatgcagaaactggtaacccacgtgagcaccccatcagcagacaaggtctccttc
atcgctagctctgattcgccctcacactccctcactaggggtgggggtgtggagacttca
ggtgcctgccggagccaggccatactcctggtgcgcctgacttctcagctgttcagggct
gtttcctgggcaggctgcagtctgccctggcctgtttctggagtgctgagcaagcatgcc
tgcaggccccattacagcacacagccaactggcccaggtagggctgcctcactccccagc
aagggggcccagctggagctcgaggagatgctggtccccaggaagatgtccatcagcccc
ctggagagctggcttacagcctgctgcctcctgcccagactggatgcccagaccccaggg
actgcggctccagcccaattctatgagtgtctccctagccagatgggggaaggggccaag
caggaggatgagaaggcctgggatacaactcagatgcagagcaaaaacgtgctgaagacc
cgccggcagaagatgaaccaccacaagcaccggaagctgtga

>gi568815593r:17253876_17454423|GENSCAN_predicted_peptide_4|77_aa
MPEPSPASVGSCAARASPTSATPCSTAPSPIDHPRAEECERMARDWQAAPPAAPVQDPLG
EASWAPEFGGALENLYV

>gi568815593r:17253876_17454423|GENSCAN_predicted_CDS_4|234_bp
atgcctgagccttcccccgcctccgtgggctcctgtgcagcccgagcctccccgacgagc
gccaccccctgctccacggcgcccagtcccatcgaccacccaagggctgaggagtgtgag
cgcatggcgcgggactggcaggcagctccacctgcagccccggtgcaggatccactgggt
gaagccagctgggctcctgagtttggcggggctttggagaacctttatgtctag

>gi568815593r:17253876_17454423|GENSCAN_predicted_peptide_5|115_aa
MMILLKRWDFGELIIGYKGVAVMNAISALIQETPESCLTSSIGSMSMSHGLKMDSAKNEQ
SIKAGFTLHDTSKTYLGGSQIVVLNQQQQHHLGLSNAKSQPLTQDRLTQKLRGWG

>gi568815593r:17253876_17454423|GENSCAN_predicted_CDS_5|348_bp
atgatgatacttcttaagaggtgggactttggggagctgattataggttataagggtgta
gcagtcatgaatgcgattagtgccctgatacaagaaaccccagagagctgcctcacctct
tccatcgggtcaatgagtatgtctcatgggcttaaaatggacagtgcaaagaatgagcag
tctataaaagcaggttttacactgcatgataccagcaaaacctacctcggtggttctcaa
atagtggtcctcaaccagcagcagcagcatcacctgggcctgagcaatgcaaagtctcaa
cctctcacccaagaccgactgactcagaaactcaggggttggggctga

>gi568815593r:17253876_17454423|GENSCAN_predicted_peptide_6|253_aa
MDVLPRESSGFPASTVLGQNLALVPHTGRLPIASPPSPPHRALGLPQGPRRRSSTAQSPP
RTQPPLLSRRHDDRVHLTGAPGLPPGLKAAINRQINLELYASCVYLSMSYYFDRDDVALK
NFAKYFLHQSHEEREHAEKLMKLQNQGGGRIFLQDIKKPDCDDWESGLNAMECALHLEKN
VNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKAIKELGDHMTNLCKMGAPESSLAEYL
FDQHTLGDSDNES

>gi568815593r:17253876_17454423|GENSCAN_predicted_CDS_6|762_bp
atggacgttcttccacgagagtcgtcggggtttcctgcttcaacagtgcttggacagaac
ctggcgctcgtcccccacaccggccggctgcccatagccagccctccgtcacctcctcac
cgcgccctcggactgccccaaggcccccgccgccgctccagcactgcgcagtcaccaccg
cgaacgcagccgcctctccttagtcgccgccatgacgaccgcgtccacctcacaggtgcg
ccaggactaccaccaggactaaaggccgccatcaaccgccagatcaacctggagctctac
gcctcctgcgtttacctgtccatgtcttactactttgaccgcgatgatgtggctttgaag
aactttgccaaatactttcttcaccaatctcatgaggagagggaacatgctgagaaactg
atgaagctgcagaaccaaggaggtggccgaatcttccttcaggatatcaagaaaccggac
tgtgatgactgggagagcgggctgaatgcgatggagtgtgcattacatttggaaaaaaat
gtgaatcagtcactactggaactgcacaaactggccactgacaaaaatgacccccatttg
tgtgacttcattgagacacattacctgaatgagcaggtcaaagccatcaaagaattgggt
gaccacatgaccaacttgtgcaagatgggagcacccgaatctagcttggcggaatatctc
tttgaccagcacaccctgggagacagtgataatgaaagctaa

>gi568815593r:17253876_17454423|GENSCAN_predicted_peptide_7|342_aa
MGIAEGQFRSCLPRTKEYTKHAQDGSSWQRRNSSSLITELERHTWQKVRIHRNQGCKMKR
ICTKTCDLMNFHRFSPVDVFGVCYLYCGYTGHLAFPHINLVLTPHSGDHQLRGKKRERRT
MGTSLPQQAVHLWIPLPDANFAHVMSIKIKKMEPITEISTWLGILALFSTCRSELSLRSQ
LRDAFLDHPIMDREPPAQQSSSKYKQLLEIQTGGPAPNKVAGKLSCSVKSSQRCSHENNS
FCKAIGLLPPWALIALPESSSNLAWEKEEKSADQKNNWPEKSDVRKQHAGGAAPAEALEN
KGRFKITGLDNEERDYDLQKSSVSRKERLRFARCKLPRNHPL

>gi568815593r:17253876_17454423|GENSCAN_predicted_CDS_7|1029_bp
atggggattgctgaaggccaattcagaagctgcctgcctagaaccaaggagtatacgaag
catgcacaagatggttcatcctggcagaggaggaacagttcttccctcataaccgagctg
gagaggcacacgtggcagaaggtgcgaattcacagaaatcaaggatgtaagatgaagaga
atctgcacaaagacttgtgaccttatgaattttcacaggttttccccagtggatgtcttt
ggcgtctgctatctctactgcggatacaccggccacctggctttcccacacatcaacctc
gtgctcacaccccactctggagaccaccagcttcgaggcaaaaagagagaacgacgtaca
atggggacttcgcttccccagcaggcagttcacctctggatacccctccctgatgcaaac
tttgctcatgtcatgtctatcaagatcaagaaaatggagcccataactgagatcagcaca
tggcttggcatcctcgccctcttctccacatgccggtctgagctgtcactcagaagtcag
ctcagagatgcctttctggaccatccaatcatggacagagagccaccagcacagcagagc
agcagcaaatataaacaacttctagaaatccaaacaggagggccagcaccaaacaaggtt
gctggcaagctttcttgctcagtaaagtcctctcaacgctgttcccatgaaaacaattca
ttctgcaaagcaatcggcctcctgcctccttgggcactaattgctctgcctgaaagttcg
agcaacctagcctgggagaaagaggagaaatccgcagaccagaagaacaactggccagag
aaaagtgatgtcagaaagcagcatgctggaggagcagctccagcagaagccctggagaac
aaggggagattcaaaatcactggacttgacaatgaggagagagattatgaccttcaaaaa
agcagcgtcagcagaaaggagcggttacgctttgctcgatgcaagttacccagaaatcat
cccctctaa

>gi568815593r:17253876_17454423|GENSCAN_predicted_peptide_8|114_aa
MRRLAQLSLQENLLQGGRLGNTVHLLCLQMHWGIHAEAMFSRGCSQPVTEQGRSASIMPF
LQKVSELLSVQGSSPTYSSSSPLYPSQVPHPKLSNLLPSSNLLLGDYEQKRICI

>gi568815593r:17253876_17454423|GENSCAN_predicted_CDS_8|345_bp
atgaggcgccttgctcagctctcccttcaagagaacttgcttcaaggtgggaggctgggg
aacaccgtccacctgctctgtcttcaaatgcactggggcattcatgcagaggctatgttt
tcccggggctgctcccagcctgtgactgagcaaggcagaagtgctagcatcatgccattc
ctgcagaaggtgtcagaactgctctcagtccaaggatcgtcccccacatattcctcctcc
tctcccctttatccttcccaggtcccccaccccaaactctcaaatctacttccatcttca
aatctgcttcttggagattatgaacaaaagaggatttgcatttga

>gi568815593r:17253876_17454423|GENSCAN_predicted_peptide_9|215_aa
MRDKHKKATQEYGVNRAGSLFKFSECNYLIAICSSYKIPFPPRICCCQYLKTGLIFSAFN
PFVNHQQPVGKKRKKEKKKKKTESFRFGLHVILSPIALRGDRWVTSCRDTGPGSRGPRTQ
SSERCWVLKPPLPLNTKQRVLLGLQAASASEQPRWERGSLRPASLTLTSEALNVLSQARN
VKGSGSLQPVRNPFTIVCFHAYALFSSHSVKRKPQ

>gi568815593r:17253876_17454423|GENSCAN_predicted_CDS_9|648_bp
atgcgggacaagcataagaaagcgactcaggagtacggagtaaacagagcaggctcattg
ttcaagttcagtgagtgtaattatctgatagccatttgtagttcctataaaatacccttt
cccccccgtatttgttgctgccagtatttaaagacaggtctaatcttttctgcttttaat
ccctttgtcaaccatcagcagccagtgggaaaaaaaaggaaaaaagaaaaaaagaaaaag
aaaacagaatcatttaggtttggccttcatgttatcctgtccccaattgcactgagaggg
gacagatgggtgaccagctgtcgtgacacaggaccagggtcacggggtccccgcacacaa
agcagcgaacgctgctgggtcctcaagccgcctctgcctctgaacacaaagcagcgagtg
ctgctgggtcttcaagctgcctctgcctctgaacagcctcgttgggagcgaggctctctc
aggccggcatcactcacgctcaccagtgaggctctgaatgttttgtctcaagccaggaat
gttaaaggctctggttctctgcagccagttaggaaccctttcaccattgtttgcttccat
gcatatgccctgttcagcagccactctgtgaagaggaaacctcagtaa

>gi568815593r:17253876_17454423|GENSCAN_predicted_peptide_10|100_aa
MNEEEMNPGRTCQTGKGRKLSNASSWRTAAVTENRVGDSGSEHPCSLQRLPLSQNRAVAA
TTKPTGFLGKKQNSRDQLAFWASSGDELLREAGTDGPRPG

>gi568815593r:17253876_17454423|GENSCAN_predicted_CDS_10|303_bp
atgaatgaggaagaaatgaacccaggtaggacttgccagactgggaagggaaggaagttg
tccaatgcaagttcttggagaaccgcagctgtgacagagaacagagttggggactctgga
tctgagcacccttgctctctgcagaggctccctttatcccaaaaccgtgctgttgcagcc
acgactaaaccaacaggatttcttggaaaaaaacagaattcccgtgatcaattggctttc
tgggcatcgagtggagatgagctgctgagagaggctggcactgatggacctaggcctggt
taa

>gi568815593r:17253876_17454423|GENSCAN_predicted_peptide_11|207_aa
MAVRSPVAYLEAISSFIHDFKDKWTFLKRVGLTFQRTPDLVPARSSWGPGADLQFQKSSL
VSGLILLTGTGLLSWDGVRLGCQNGADILILNDSHSLGHRMSSGLWAPNSHQPALGFELH
VRFPASSVVPLAATMVLSLLCSTRGGRQGLCCGPPAAETQGHPPSLCRLHHSARRWLHPP
PPRAFRIVVLQHQQALPIHVHSFLQLM

>gi568815593r:17253876_17454423|GENSCAN_predicted_CDS_11|624_bp
atggctgtcagaagtccagttgcatatctggaagccatctcttcctttattcatgacttt
aaggacaagtggacatttttgaaaagggtaggcttgacattccaaagaactccagatctc
gtgcctgcaaggtcatcctggggccctggggctgacctccagttccagaaaagcagccta
gtgagtggattgattctgctgactggcacaggattgctgtcatgggatggtgtgcgattg
ggctgccagaatggtgctgacatcctgattttgaatgattctcactcacttggtcacagg
atgagttcaggactctgggctcccaacagccatcagccagctcttgggttcgagctgcat
gtgaggttccctgcctcctcagttgtccctcttgctgctactatggtgctgtctttgctc
tgcagcacccgcggtggcaggcaaggtttatgctgtggaccccctgctgctgaaacccag
ggccatcccccatccctctgcaggctgcaccatagtgctcgaaggtggcttcacccacct
cctccaagggctttccggattgttgttctgcaacaccagcaggctcttccaatccatgtt
cattctttcctccagctgatgtga

>gi568815593r:17253876_17454423|GENSCAN_predicted_peptide_12|218_aa
DIQLQGNPKVHSGLWVIIMCQYRLMDCNKGTTLARGVDNGGGQRETLALCSKTVHNTNVP
EKIVQNEGQLVAHSQEIQKYKKSVENWSPTITIQSLEKVLQALSIESLHPILETVWKKKQ
RREERGKVQKYFKLCQKKSISTNIHREMNDRSHRSKVFPHDSFNWPGPNQGTYRKDPLQE
KPGHKACSLLSCNHAMDLEITQRENQSLTMASRVSTIC

>gi568815593r:17253876_17454423|GENSCAN_predicted_CDS_12|657_bp
gatatacaactccaagggaaccctaaagtacactctgggctttgggtgataatcatgtgt
cagtataggctcatggattgtaacaagggtaccactctggccagaggtgttgataatgga
ggaggccagagagagacactggctctatgttccaagactgttcacaacacaaatgtccct
gaaaagatagttcagaatgaaggacagttagtcgctcactcacaagagatacagaaatac
aaaaagtctgtggagaattggtctccaacaataacaattcaatcattagagaaagtactt
caggcattgtcaattgaatctcttcatccaatcttggaaacagtctggaaaaagaagcag
aggagagaagaaaggggaaaagttcaaaagtactttaaactctgccaaaaaaaatcaatt
agtaccaatatacacagagaaatgaatgacagaagtcatcgcagcaaggtatttcctcat
gactccttcaactggccagggccaaaccaaggcacctaccggaaagatcctcttcaagag
aaaccaggtcataaggcttgttcacttctcagctgcaaccatgcaatggatcttgaaatc
acacagagggagaaccagagcctcacaatggcctccagggtgtccaccatctgctga