GENSCAN 1.0	Date run:  6-Nov-116	Time: 23:12:14

Sequence gi568815593r:133872774_134093012 : 220239 bp : 47.72% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    419    436   18  1  0  104   90     0 0.178   2.05
 1.02 Term +  12561  12677  117  2  0   60   49   168 0.785   8.64
 1.03 PlyA +  13676  13681    6                               1.05

 2.00 Prom +  14003  14042   40                              -6.26
 2.01 Init +  19658  19763  106  1  1   78  115    45 0.309   4.61
 2.02 Intr +  27229  27315   87  2  0   48  113    47 0.486   3.14
 2.03 Intr +  28467  28556   90  1  0   80   78    36 0.311   1.77
 2.04 Intr +  44708  44796   89  0  2   39   84    92 0.100   3.59
 2.05 Term +  51926  52105  180  1  0  105   49    52 0.109   0.61
 2.06 PlyA +  55047  55052    6                               1.05

 3.02 PlyA -  59188  59183    6                              -0.45
 3.01 Sngl -  64014  63640  375  0  0   63   46   269 0.999  16.34
 3.00 Prom -  68310  68271   40                              -7.56

 4.04 PlyA -  71193  71188    6                               1.05
 4.03 Term -  74183  74142   42  2  0  127   45    30 0.033  -0.24
 4.02 Intr -  87247  86721  527  2  2   77  100   312 0.163  23.96
 4.01 Init -  89767  89746   22  1  1   81  106    12 0.831   2.17
 4.00 Prom -  91678  91639   40                              -5.46

 5.09 PlyA -  92385  92380    6                               1.05
 5.08 Term - 100089  99998   92  1  2  150   36   115 0.981  10.38
 5.07 Intr - 101075 101018   58  2  1   57   91    15 0.844  -2.84
 5.06 Intr - 103248 103098  151  2  1  115   72   222 0.884  23.46
 5.05 Intr - 108183 107956  228  2  0   99   75   355 0.673  32.28
 5.04 Intr - 118134 118082   53  0  2   70   86    44 0.964   0.11
 5.03 Intr - 118381 118229  153  1  0   83   95   152 0.999  15.67
 5.02 Intr - 119582 119533   50  0  2  114  111     4 0.999   3.70
 5.01 Init - 120239 120173   67  2  1   74  101    90 0.946  10.13
 5.00 Prom - 121337 121298   40                              -6.06

 6.00 Prom + 123885 123924   40                              -3.56
 6.01 Init + 129143 129386  244  1  1   70   95   123 0.787   9.28
 6.02 Term + 132411 132751  341  1  2   86   54   123 0.476   3.40
 6.03 PlyA + 132767 132772    6                               1.05

 7.00 Prom + 145186 145225   40                              -3.56
 7.01 Init + 145358 145384   27  1  0   70   81    57 0.316   0.91
 7.02 Intr + 147073 147182  110  0  2   95   76    65 0.316   5.08
 7.03 Intr + 154561 154606   46  1  1  107   75    19 0.559   0.91
 7.04 Term + 158318 158416   99  1  0   79   45    96 0.893   2.53
 7.05 PlyA + 159580 159585    6                               1.05

 8.06 PlyA - 165725 165720    6                               1.05
 8.05 Term - 174945 174851   95  1  2   61   44    89 0.121  -0.21
 8.04 Intr - 180724 180601  124  1  1   87   64    35 0.103   1.16
 8.03 Intr - 200031 199979   53  1  2   94   75    20 0.155  -0.07
 8.02 Intr - 202117 202070   48  2  0   98   56    49 0.168   1.35
 8.01 Intr - 207540 207387  154  0  1   58   79   144 0.906  10.15

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  71528  71629  102  1  0   57  103    61 0.823   4.74
S.002 Term +  71823  72035  213  2  0   55   43   139 0.935   3.33


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593r:133872774_134093012|GENSCAN_predicted_peptide_1|44_aa
MGEAVQGPDSWWTPITTPYTQTSATGYPQIGLNSFFNQDKGEEK

>gi568815593r:133872774_134093012|GENSCAN_predicted_CDS_1|135_bp
atgggggaggctgtgcagggcccagacagctggtggacaccaattaccaccccgtacacc
cagacttcagcaacaggctaccctcaaattggcctcaactccttcttcaaccaggacaag
ggggaggagaaatag

>gi568815593r:133872774_134093012|GENSCAN_predicted_peptide_2|183_aa
MEMSGALALASGTSLCSLRMAGSGVQVQLEYGSLAARDLLRMQETEVKGRCRAMVSDCSI
NEGPRLPSSGQECSICPSDPLPAQVMNELTSHHRDPLKAATRYGSPPCLQRKYEDFPDID
WGKRNLCGFHLACATAYHWMSEDASFRLPLRFTSNHQLATLQLPDFKCPSCAPQFCITSP
NPP

>gi568815593r:133872774_134093012|GENSCAN_predicted_CDS_2|552_bp
atggagatgagcggagcccttgctctggcctctgggacatctctttgctctctgaggatg
gctgggtctggggttcaagtgcagctggaatatgggagtcttgcagccagagatctcctg
cggatgcaagagacggaggtcaaaggcaggtgccgggccatggtgagtgactgctccata
aatgagggaccacgcttaccttcatctggccaggagtgctccatctgcccctctgaccct
ctgcctgcccaggtcatgaacgagctgacttcacatcacagagaccctctgaaagcagca
acacgctatggttcccctccatgtctccagagaaaatacgaggacttccctgacattgac
tgggggaaaaggaatctttgtggattccacctggcctgtgccactgcttatcactggatg
tctgaggatgcaagcttcaggcttcctctgcgtttcaccagcaatcatcagcttgcaaca
ctgcagcttcctgacttcaaatgtccttcatgtgctccccaattttgtatcaccagcccc
aacccaccctga

>gi568815593r:133872774_134093012|GENSCAN_predicted_peptide_3|124_aa
MRSHRTGGGATELEEETQNQRRGHRTGGGATEPEEGPQNQRRGHRTGRRATEPKEEPQNQ
GRSHRTRGGATEPEEESQNQRRSHRTRRGATELEEEPQNQRRSHRTGGGATEPEEETQNR
TKSH

>gi568815593r:133872774_134093012|GENSCAN_predicted_CDS_3|375_bp
atgaggagccacagaaccggaggaggggccacagaactggaggaggagacacagaaccag
aggaggggccacagaaccggaggaggggccacagaaccagaggaggggccacagaaccag
aggaggggccacagaaccggacgaagagccactgaaccgaaggaggagccacagaaccag
gggaggagccacagaacgagaggaggagccacagaaccagaggaggagtcacagaaccag
aggaggagccacagaaccagaagaggagccacagaactggaggaggagccacagaaccag
aggaggagtcacagaactggaggaggagccacagaaccggaggaggagacacagaaccgg
acaaagagccactga

>gi568815593r:133872774_134093012|GENSCAN_predicted_peptide_4|196_aa
MTLELDEIVSRTDSPSPTVLNSHISTPNVNALTHENQTKPSISQISTTLPPTTSTKKSGG
ASVVPHPSPTPLSQEEADNNEDPSIEEEDLLMLNSSPSTAKDTLDNGDYGEPDYDWTTGP
RDDDESDDTLEENRGYMEIEQSVKSFKMPSSNIEEEDSHFFFHLIIFAFCIAVVYITYHN
KRKKQMSELEDTNFTL

>gi568815593r:133872774_134093012|GENSCAN_predicted_CDS_4|591_bp
atgactttggagttggatgaaattgtatcacggactgattcaccgagcccaaccgtactc
aactcacatatttctaccccaaatgtgaatgctttaacacatgaaaaccaaaccaaacct
tctatttcccaaatcagcaccaccctccctcccacgacgagtaccaagaaaagtggagga
gcatctgtggtccctcatccctcgcctactcctctgtctcaagaggaagctgataacaat
gaagatcctagtatagaggaggaggatcttctcatgctgaacagttctccatccacagcc
aaagacactctagacaatggcgattatggagaaccagactatgactggaccacgggcccc
agggacgacgacgagtctgatgacaccttggaagaaaacaggggttacatggaaattgaa
cagtcagtgaaatcttttaagatgccatcctcaaatatagaagaggaagacagccatttc
ttttttcatcttattatttttgctttttgcattgctgttgtttacattacatatcacaac
aaaaggaagaaacagatgtctgagcttgaggacaccaatttcacattatag

>gi568815593r:133872774_134093012|GENSCAN_predicted_peptide_5|283_aa
MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET
KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR
EHINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL
HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS
SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA

>gi568815593r:133872774_134093012|GENSCAN_predicted_CDS_5|852_bp
atggctgtgccacccacgtatgccgatcttggcaaatctgccagggatgtcttcaccaag
ggctatggatttggcttaataaagcttgatttgaaaacaaaatctgagaatggattggaa
tttacaagctcaggctcagccaacactgagaccaccaaagtgacgggcagtctggaaacc
aagtacagatggactgagtacggcctgacgtttacagagaaatggaataccgacaataca
ctaggcaccgagattactgtggaagatcagcttgcacgtggactgaagctgaccttcgat
tcatccttctcacctaacactgggaaaaaaaatgctaaaatcaagacagggtacaagcgg
gagcacattaacctgggctgcgacatggatttcgacattgctgggccttccatccggggt
gctctggtgctaggttacgagggctggctggccggctaccagatgaattttgagactgca
aaatcccgagtgacccagagcaactttgcagttggctacaagactgatgaattccagctt
cacactaatgtgaatgacgggacagagtttggcggctccatttaccagaaagtgaacaag
aagttggagaccgctgtcaatcttgcctggacagcaggaaacagtaacacgcgcttcgga
atagcagccaagtatcagattgaccctgacgcctgcttctcggctaaagtgaacaactcc
agcctgataggtttaggatacactcagactctaaagccaggtattaaactgacactgtca
gctcttctggatggcaagaacgtcaatgctggtggccacaagcttggtctaggactggaa
tttcaagcataa

>gi568815593r:133872774_134093012|GENSCAN_predicted_peptide_6|194_aa
MRPDPAEEPTGQLFSVATTGLHGKPKAADYRISEHQEGLPPSFGWSSTTHAPLPVTTTED
TTPREIPSKAKWTSVLQEHLPDPPGVDVAGAGPKPRLGGQSGPRPPIKARVGPIPRGQSQ
AQRGHWAPGAAQIQSRGGDCCSRAPRSGYNVSGASDPPARRLDNLRENPCAPILHYRLAI
FSCSKATSSQFPCI

>gi568815593r:133872774_134093012|GENSCAN_predicted_CDS_6|585_bp
atgcgcccagacccagctgaggagcccactggtcaacttttctcagtggctaccacagga
ctccatggaaaacccaaagccgcagactacagaatctctgagcaccaggaggggctgcct
ccaagcttcggctggtcctcaaccacacatgcgcctcttccagtcactaccaccgaagac
actacaccacgggaaattccatcaaaggcgaagtggacttcagtgcttcaggagcatctt
cctgatcccccgggagttgatgtggccggcgctggacccaagcctcgcctgggtggacaa
agtggcccccggccccccatcaaagcccgcgtgggccccatcccccgagggcagtcccag
gcccagcgcggacactgggcgcctggggcggcgcagatacagagtagaggcggcgactgt
tgctcccgagctccgcgctccggatacaatgtgtctggcgcctccgacccgcccgcgcgg
cgtctagacaatctcagagaaaacccctgtgcgccgattttgcactacagattagcgatt
ttctcctgtagcaaagctactagcagccaatttccatgcatttga

>gi568815593r:133872774_134093012|GENSCAN_predicted_peptide_7|93_aa
MVRASARLLPPPESGEDLLPHWPHTNTSSSVLVARNDFLSDMGNDRSPSDPLLHDQFPSS
KVVLDDHLVWGSLTLEEAICSPFQLIKKELNPT

>gi568815593r:133872774_134093012|GENSCAN_predicted_CDS_7|282_bp
atggtgcgggcatctgctcggcttctgcctcctcctgaatctggagaggacttgcttcct
cactggccccacaccaacacctcctcctctgtcctggttgccaggaacgactttctctct
gacatgggcaatgacaggtctccctcagacccactgcttcatgaccagttcccgagcagc
aaggtggtcctggatgaccacctggtgtggggatcattaaccttggaagaagccatttgc
agtccattccagctgatcaagaaagaactaaatccaacatag

>gi568815593r:133872774_134093012|GENSCAN_predicted_peptide_8|157_aa
AGQKETIPVSKGLEIVCFVGVKATRDCESGHRTCEKSFVSDDGFLSRANDHSFPGKGAFG
GGCLHGTSGLQEVTMGLEETITGAEDPPSWRLPLARLTGALDNDGGLGNGSIDPQQTDKM
QSIPRHGTLNQKGKQKKQNKKHPNGLQLMDGACSIVS

>gi568815593r:133872774_134093012|GENSCAN_predicted_CDS_8|474_bp
gccgggcaaaaggagacaatcccagtgtccaagggcctagaaatagtctgttttgtggga
gtaaaggccaccagggactgtgaaagtggccaccggacatgtgagaaatccttcgtgtct
gacgatgggttcttatcgagggcaaatgaccacagttttcctggcaaaggagcctttggt
ggtggatgtcttcatggcacatctggactgcaggaggtcacaatggggttggaggagacc
atcactggggcagaggatcctccttcctggcgcctgcccctggcacggctcacaggagcc
ctagacaatgatggagggttgggcaatgggtccattgacccacagcaaactgacaaaatg
cagagtatccccaggcatggtacactgaatcaaaaaggaaaacagaaaaaacagaacaag
aaacaccccaatgggttgcagcttatggatggtgcctgcagcattgtgagctga