GENSCAN 1.0	Date run:  4-Nov-116	Time: 21:14:54

Sequence gi568815593f:172986499_173233742 : 247244 bp : 44.43% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    182    262   81  1  0   97   81   101 0.978  11.27
 1.02 Intr +   8277   8324   48  2  0  102   89     0 0.169   0.38
 1.03 Term +  43599  43619   21  2  0  117   42    14 0.143  -1.99
 1.04 PlyA +  45661  45666    6                               1.05

 2.03 PlyA -  45692  45687    6                               1.05
 2.02 Term -  47853  47711  143  1  2   61   41    79 0.574  -1.41
 2.01 Init -  50023  49906  118  1  1   82   49    93 0.795   5.22
 2.00 Prom -  63054  63015   40                              -2.56

 3.06 PlyA -  63063  63058    6                               1.05
 3.05 Term -  69341  69237  105  2  0   43   42   160 0.856   5.31
 3.04 Intr -  70363  70197  167  2  2  127   23    59 0.718   2.98
 3.03 Intr -  92589  92495   95  2  2   52   86    77 0.320   3.51
 3.02 Intr -  99407  99271  137  2  2   24   91   132 0.351   6.47
 3.01 Init - 101712 101695   18  0  0   62   89    31 0.405   0.65
 3.00 Prom - 102049 102010   40                              -9.85

 4.00 Prom + 102261 102300   40                              -4.96
 4.01 Init + 103826 104903 1078  1  1   69   67   688 0.091  59.36
 4.02 Intr + 122126 122320  195  0  0   33   95   129 0.942   7.49
 4.03 Intr + 124024 124213  190  2  1   92   99    86 0.414   8.74
 4.04 Intr + 125808 125881   74  0  2   79   52    66 0.343   1.15
 4.05 Intr + 136582 136704  123  2  0   90  103    72 0.613   9.46
 4.06 Term + 147132 147247  116  1  2  100   37    15 0.184  -3.67
 4.07 PlyA + 147594 147599    6                              -0.45

 5.00 Prom + 151100 151139   40                              -3.36
 5.01 Init + 158048 158131   84  1  0  115   84   115 0.939  14.62
 5.02 Intr + 160368 160460   93  2  0   70   94    27 0.714   1.66
 5.03 Intr + 167824 167915   92  0  2   74   96    73 0.975   5.49
 5.04 Intr + 173435 173553  119  2  2   97   71   156 0.999  14.91
 5.05 Term + 177227 177423  197  0  2   94   50   290 0.982  23.37
 5.06 PlyA + 177838 177843    6                               1.05

 6.05 PlyA - 177855 177850    6                               1.05
 6.04 Term - 188969 188855  115  1  1   40   43    97 0.299  -1.56
 6.03 Intr - 191105 190998  108  1  0   66   99    45 0.494   2.80
 6.02 Intr - 197480 197326  155  2  2   83  102    67 0.172   6.47
 6.01 Init - 207199 207125   75  1  0   80   79    31 0.021   2.49
 6.00 Prom - 218683 218644   40                              -5.36

 7.03 PlyA - 219220 219215    6                              -0.45
 7.02 Term - 219438 219288  151  2  1   84   43   141 0.944   6.58
 7.01 Init - 222288 222218   71  0  2   49   78    63 0.707   1.92
 7.00 Prom - 222452 222413   40                              -2.16

 8.00 Prom + 226228 226267   40                              -7.76
 8.01 Sngl + 227201 227383  183  1  0   97   48   215 0.488  11.66
 8.02 PlyA + 227777 227782    6                               1.05

 9.06 PlyA - 232063 232058    6                               1.05
 9.05 Term - 239520 239338  183  0  0   62   36   226 0.987  12.34
 9.04 Intr - 242481 242089  393  0  0   32   65   135 0.278   0.45
 9.03 Intr - 243466 243264  203  2  2   98   60   116 0.941   8.80
 9.02 Intr - 245133 244966  168  1  0  -21   65   140 0.079   0.72
 9.01 Intr - 246711 246088  624  1  0  103   23  1145 0.123 101.72

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 120439 120487   49  0  1   77   58    66 0.879   1.61
S.002 Term - 246711 246071  641  1  2  103   50  1143 0.822 106.37


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593f:172986499_173233742|GENSCAN_predicted_peptide_1|49_aa
MSIFTDGRKKPLKQPKKQAKEMDGEDKSYHYHVGDLFSLLLSLCPAGKS

>gi568815593f:172986499_173233742|GENSCAN_predicted_CDS_1|150_bp
atgtccattttcacagatggcaggaagaagcccctgaaacagcccaagaagcaggccaag
gagatggatggggaagataagagttatcattaccatgttggtgacctgttcagtttgctg
ctatctctttgcccagctggcaaatcctag

>gi568815593f:172986499_173233742|GENSCAN_predicted_peptide_2|86_aa
MTFAWKGSGAQEHFRYPLNGLNGGPSSLGPDKHWMECGNGRQKVNIEKVNQANTLKCTDA
QQNMKHRIINLVQVWPGFAGLWQKVQ

>gi568815593f:172986499_173233742|GENSCAN_predicted_CDS_2|261_bp
atgacgttcgcctggaagggctctggagcgcaggaacattttcggtatcctctgaacggg
ctaaatggaggtccttccagtctgggccctgacaaacactggatggagtgtggcaacgga
aggcaaaaagttaacatcgagaaagttaaccaagccaacactttaaaatgcacagatgct
caacaaaatatgaaacacaggataatcaacttggtgcaagtttggccaggttttgcaggg
ctgtggcaaaaggtccagtaa

>gi568815593f:172986499_173233742|GENSCAN_predicted_peptide_3|173_aa
MEEELQTPFLLVGTQTDLRDDPSTIEKLAKNKQKPITPETAKKLTHDLKAISLSLCDLMP
SSYNWYVVIIIALILSPDSYEKEGRLPAAAAPGSEAAGKGRAARQDGRPALPIPGLAYCP
PASPIYRRPALLCNRPGPGHGFRGTGINQTACTFEERDPYTTVQPECHYYRSA

>gi568815593f:172986499_173233742|GENSCAN_predicted_CDS_3|522_bp
atggaagaagagctgcagactcctttcttgcttgttgggacccaaactgatctcagagat
gacccctctactattgagaaacttgccaagaacaaacagaagcctatcactccagagact
gctaaaaagctgacccatgacctgaaggccatcagtctctccttatgtgacctcatgccg
tcgtcctacaactggtatgtagtcataatcattgccctaattctctcccctgattcctat
gagaaagaaggccgactgccggcagcagcggccccgggctcggaggcagcggggaagggc
cgggcggcccggcaggacggacgcccggcgctgcccatccccggcctagcctactgcccg
cccgcgagtcccatctaccgccgccccgcgcttttatgtaaccgtcccgggccggggcac
ggattccgaggcacagggatcaatcagactgcgtgcacctttgaagagagagacccgtat
acgactgtacaaccagaatgccactactacagaagcgcctag

>gi568815593f:172986499_173233742|GENSCAN_predicted_peptide_4|591_aa
MNYQQNPRDNFLSLEDCKDIENLESFTDVLDNEGALTSNWEQWDTYCEDLTKYTKLTSCD
IWGTKEVDYLGLDDFSSPYQDEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPL
PSSFPGKKITSRAAAPVCSSKTLQAEVPLSDCVQKASKPTSSTQIMVKTNMYHNEKVNFH
VECKDYVKKAKVKINPVQQSRPLLSQIHTDAAKENTCYCGAVAKRQEKKGMEPLQGHATP
ALPFKETQELLLSPLPQEGPGSLAAGESSSLSASTSVSDSSQKKEEHNYSLFVSDNLGEQ
PTKCSPEEDEEDEEDVDDEDHDEGFGSEHELSENEEEEEEEEDYEDDKDDDISDTFSEPG
YENDSVEDLKEVTSISSRKRGKRRYFWEYSEQLTPSQQERMLRPSEWNRDTLPSNMYQKN
GLHHGKYAVKKSRRTDVEDLTPNPKKLLQIGNELRKLNKVISDLTPVSELPLTARPRSRK
EKNKLASRACRLKKKAQYEANKVKLWGLNTEYDNLLFVINSIKQEIVNRVQNPRDERGPN
MGQKLEILIKDTLGLPVAGQTSEFVNQVLEKTAEGNPTGGLVGLRIPTSKV

>gi568815593f:172986499_173233742|GENSCAN_predicted_CDS_4|1776_bp
atgaactaccaacagaatcctagagacaactttctttctttggaggactgcaaagacatt
gaaaatctggagtctttcacagatgtcctggataatgagggtgctttaacctcaaactgg
gaacagtgggatacatactgtgaagacctaacgaaatataccaaactaaccagctgtgac
atctggggaacaaaagaagtggattacttgggtcttgatgacttttctagtccttaccaa
gatgaagaggttataagtaaaactccaactttagctcaacttaatagtgaggactcacag
tctgtttctgattccctttattaccccgattcacttttcagtgtcaaacaaaatccctta
ccctcttcattccctggtaaaaagatcacaagcagagcagctgctcctgtgtgttcttct
aagactctgcaggctgaggtccctttgtcagactgtgtccaaaaagcaagtaaacccact
tcaagcacacaaatcatggtgaagaccaacatgtatcataatgaaaaggtgaactttcat
gttgaatgtaaagactatgtaaaaaaggcaaaggtaaagatcaacccagtgcaacagagc
cggcccttgttgagccagattcacacagatgcagcaaaggagaacacctgctactgtggt
gcagtggcaaagagacaagagaaaaaagggatggagcctcttcaaggtcatgccactccc
gctttgccttttaaagaaacccaggaactattactaagtcccctgccccaggaaggtcct
gggtcacttgcagcaggagagagcagcagtctttctgccagtacatcagtctcagattca
tcccagaaaaaagaagagcacaattattctctttttgtctccgacaacttgggtgaacag
ccaactaaatgcagtcctgaagaagatgaggaggacgaggaggatgttgatgatgaggac
catgatgaaggattcggcagtgagcatgaactgtctgaaaatgaggaggaggaagaagag
gaagaggattatgaagatgacaaggatgatgatattagtgatactttctctgaaccaggc
tatgaaaatgattctgtagaagacctgaaggaggtgacttcaatatcttcacggaagaga
ggtaaaagaagatacttctgggagtatagtgaacaacttacaccatcacagcaagagagg
atgctgagaccatctgagtggaaccgagatactttgccaagtaatatgtatcagaaaaat
ggcttacatcatggaaaatatgcagtaaagaagtcacggagaactgatgtagaagacctg
actccaaatcctaaaaaactcctccagataggcaatgaacttcggaaactgaataaggtg
attagtgacctgactccagtcagtgagcttcccttaacagcccgaccaaggtcaaggaag
gaaaaaaataagctggcttccagagcttgtcggttaaagaagaaagcccagtatgaagct
aataaagtgaaattatggggcctcaacacagaatatgataatttattgtttgtaatcaac
tccatcaagcaagagattgtaaaccgggtacagaatccaagagatgagagaggacccaac
atggggcagaagcttgaaatcctcattaaagatactctcggtctaccagttgctgggcaa
acctcagaatttgttaaccaagtgttagagaagactgcagaagggaatcccactggaggc
cttgtaggattaaggataccaacatcaaaggtgtaa

>gi568815593f:172986499_173233742|GENSCAN_predicted_peptide_5|194_aa
MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQD
LEQLAKEQDKESEKQLLLQEVENHKKQMLRKTTKESLAQTSSTITESLMGISRMMAQQVQ
QSEEAMQSLVTSSRTILDANEEFKSMSGTIQLGRKLITKYNRRELTDKLLIFLALALFLA
TVLYIVKKRLFPFL

>gi568815593f:172986499_173233742|GENSCAN_predicted_CDS_5|585_bp
atggcggctccccaagacgtccacgtccggatctgtaaccaagagattgtcaaatttgac
ctggaggtgaaggcgcttattcaggatatccgtgattgttcaggacccttaagtgctctt
actgaactgaatactaaagtaaaagagaaatttcaacagttgcgtcacagaatacaggac
ctggagcagttggctaaagagcaagacaaagaatcagagaaacaacttctactccaggaa
gtggagaatcacaaaaagcagatgctcaggaaaaccaccaaagagagcctggcccagaca
tccagtaccatcactgagagcctcatggggatcagcaggatgatggcccagcaggtccag
cagagcgaggaggccatgcagtctctagtcacttcttcacgaacgatcctggatgcaaat
gaagaatttaagtccatgtcgggcaccatccagctgggccggaagcttatcacaaaatac
aatcgccgggagctgacggacaagcttctcatcttccttgcgctagccctgtttcttgct
acggtcctctatattgtgaaaaagcggctctttccatttttgtga

>gi568815593f:172986499_173233742|GENSCAN_predicted_peptide_6|150_aa
MDTDVDLHSIGGMSKDLQPRFKTTTGGHWRILKEAMACASEREGLTQGTNLNEESPAALG
PVRSCQNDPSKAQGGPSHQWPFHMDLLQMTSLAEGPGGRDMTPFSQPSSQSVRNWVALQE
VSRQRALPPELYPLSDQQRHEILIGARTLL

>gi568815593f:172986499_173233742|GENSCAN_predicted_CDS_6|453_bp
atggacacagacgtagacctgcactccataggaggaatgtcaaaggatttgcagccacgt
tttaaaaccaccacaggaggccactggagaattctcaaggaggccatggcatgtgcctct
gaaagagaggggctgacgcagggcaccaacttgaatgaggaaagtccggctgcattgggc
ccagtcagaagctgccagaatgacccaagcaaggcacagggaggcccaagccaccagtgg
cctttccacatggacttgctgcaaatgaccagtctggctgagggccctgggggccgggac
atgacacccttctctcagccctcatcacagtctgtgaggaactgggtggccctgcaggag
gtcagccgccagcgagcattaccgcctgagctctacccactgtcggatcagcagcggcat
gagattctcataggagcgagaaccctattgtga

>gi568815593f:172986499_173233742|GENSCAN_predicted_peptide_7|73_aa
MEQLEEDLRREFKTEGAARAKALRNRRGFVLSCASEERHPLRGHWMPHAFDVKVPFENGP
TLYQQVPETPPGY

>gi568815593f:172986499_173233742|GENSCAN_predicted_CDS_7|222_bp
atggagcagctggaggaagatctgagaagagagtttaagacagagggagcagctcgtgca
aaggccctgagaaacaggagaggtttcgtcctgagctgtgcaagtgaggagcgtcaccct
ctgagagggcactggatgccacacgctttcgatgtcaaggtcccttttgaaaatggccct
actctgtaccaacaagttccagagacaccaccaggctactaa

>gi568815593f:172986499_173233742|GENSCAN_predicted_peptide_8|60_aa
MPEPAPDAVGSCAAPASPTSAAPCSTAPGPIDCPRAEECRRKHHGTGRQLRLRPGSRTTE

>gi568815593f:172986499_173233742|GENSCAN_predicted_CDS_8|183_bp
atgcctgagcctgcccctgacgccgtgggctcctgcgcggccccagcctccccgacgagc
gccgccccctgctccacggcgcccggtcccatcgactgcccaagggctgaggagtgccgg
cgcaagcaccacgggactggcaggcagctccgcctgcggcccgggtccaggaccactgag
tga

>gi568815593f:172986499_173233742|GENSCAN_predicted_peptide_9|523_aa
XLCALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQL
ASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCL
GDSAPYAPAYGVGLNPYGYNAYPAYPGYGGAACSPGYSCTAAYPAGPSPAQPATAAANNN
FVNFGVGDLNAVQSPGIPQSNSGVSTLHACFQMEKPRTQALGKRSQAPQMPPDATSGPHQ
LPVGLSAEAGPQRGVLRMVLTSSCDRETEEVTWVVKIIQSLSGNGSWETHRTHTGESVPE
ARARHTVDVSPVKMQTEWLQAALSRTQTLASGDARKPQVSPLTRKHHAVPRGSSTVFPAA
PAPRILREAFRAQAQRFYAAGNSLVASKPCRLPYQAELLEKGACGLPLIYHSQSLSRARH
CSELFTSEPIESLFIPLGYREETDEGFILNPERRSTLPRVTQLVNSEDKRALAKLVEAIR
TNYNDKYDEIHRHWGGSVLGPKSVVHIAKLEKAKAKELATKLG

>gi568815593f:172986499_173233742|GENSCAN_predicted_CDS_9|1572_bp
nagctgtgcgcgctgcagaaggcggtggagctggagaagacagaggcggacaacgcggag
cggccccgggcgcgacggcggaggaagccgcgcgtgctcttctcgcaggcgcaggtctat
gagctggagcggcgcttcaagcagcagcggtacctgtcggcccccgaacgcgaccagctg
gccagcgtgctgaaactcacgtccacgcaggtcaagatctggttccagaaccggcgctac
aagtgcaagcggcagcggcaggaccagactctggagctggtggggctgcccccgccgccg
ccgccgcctgcccgcaggatcgcggtgccagtgctggtgcgcgatggcaagccatgccta
ggggactcggcgccctacgcgcctgcctacggcgtgggcctcaatccctacggttataac
gcctaccccgcctatccgggttacggcggcgcggcctgcagccctggctacagctgcact
gccgcttaccccgccgggccttccccagcgcagccggccactgccgccgccaacaacaac
ttcgtgaacttcggcgtcggggacttgaatgcggttcagagccccgggattccgcagagc
aactcgggagtgtccacgctgcatgcctgtttccagatggaaaagccaagaacccaagcc
cttggcaagcgttctcaggctcctcagatgcccccagatgccacgtcggggcctcatcag
ctgcccgtgggactgagtgccgaggctggaccccagagaggtgtcctgcggatggtgctc
acctccagctgtgaccgggaaactgaggaggttacgtgggtggtcaagatcatccagtct
ctaagcgggaacgggagctgggaaacacacaggacacatactggggagagtgttcctgaa
gccagagcccgccacactgtggatgtctctccagtaaagatgcagacagaatggctccag
gccgcgctgagcagaacccagactcttgccagtggggacgcgcggaagccgcaggtttca
ccgctgactcggaaacatcacgcggtcccgcgcgggagtagcaccgtcttccccgcagcg
cccgcccctcgcatcctccgggaagcattccgagctcaggcccagcgcttctacgccgca
ggcaacagccttgtggcctctaagccttgccgactcccctaccaggctgagctcctggag
aaaggggcctgtggcctgcctttaatttatcactcacagagtttatcgcgtgccaggcac
tgttctgagctctttacaagtgaacccattgaatccctttttatacctctgggttatcgt
gaggaaacagatgaaggattcattttaaacccagaaagaaggagtacgttgcccagggtc
acacagctggttaactcagaagacaaaagagctttggctaagctggtggaagctatcagg
accaattacaacgacaaatatgatgagatccaccgtcactggggaggcagtgtcctgggt
cccaagtctgtggttcacatcgccaagcttgaaaaggcaaaggctaaagaacttgccacc
aaactgggttaa