GENSCAN 1.0	Date run:  6-Nov-116	Time: 05:40:45

Sequence gi568815592r:53028209_53245632 : 217424 bp : 42.09% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3360   3415   56  2  2   42   99    94 0.880   6.71
 1.02 Term +   4703   4802  100  2  1   70   33   130 0.873   2.32
 1.03 PlyA +   6534   6539    6                               1.05

 2.00 Prom +   7168   7207   40                              -8.75
 2.01 Init +   7363   7472  110  0  2   91   89    76 0.417   7.74
 2.02 Intr +   7524   7649  126  0  0   -9   91   130 0.385   2.47
 2.03 Intr +  13044  13142   99  0  0   53   61    87 0.196   0.81
 2.04 Intr +  19972  20126  155  1  2   50   44   133 0.239   3.89
 2.05 Intr +  21926  22086  161  0  2   59  105    27 0.105   0.29
 2.06 Intr +  26073  26205  133  2  1   56   82    80 0.122   3.50
 2.07 Term +  33814  33947  134  2  2    1   34   158 0.035  -1.03
 2.08 PlyA +  34054  34059    6                               1.05

 3.03 PlyA -  34606  34601    6                               1.05
 3.02 Term -  37471  37136  336  1  0   92   40   338 0.656  22.99
 3.01 Init -  40002  39991   12  0  0   77  121    23 0.422   3.64
 3.00 Prom -  40275  40236   40                              -6.15

 4.00 Prom +  40341  40380   40                              -6.45
 4.01 Init +  45285  45430  146  2  2   27  -24   186 0.296   0.94
 4.02 Intr +  46033  46162  130  1  1  108   80   -33 0.478  -2.32
 4.03 Intr +  48278  48335   58  1  1   71   93    87 0.880   5.04
 4.04 Intr +  50591  50690  100  0  1   87   37   131 0.993   6.15
 4.05 Intr +  52760  52890  131  2  2  102   64   132 0.994  11.62
 4.06 Intr +  54296  54410  115  0  1   67   79   107 0.892   6.29
 4.07 Intr +  64221  64339  119  0  2   90  115    36 0.826   5.69
 4.08 Intr +  64526  64616   91  0  1   70   87    47 0.989   0.93
 4.09 Intr +  65258  65353   96  2  0   89   69    65 0.880   2.91
 4.10 Intr +  67305  67456  152  0  2  109   58    94 0.028   7.39
 4.11 Intr +  81964  82016   53  2  2   88   73    59 0.132   2.11
 4.12 Term +  91618  91836  219  0  0   80   48   130 0.568   4.26
 4.13 PlyA +  93498  93503    6                               1.05

 5.07 PlyA -  93558  93553    6                               1.05
 5.06 Term - 100588  99998  591  1  0   80   46   383 0.618  26.84
 5.05 Intr - 102723 102595  129  0  0   61   51    88 0.752   2.37
 5.04 Intr - 103911 103799  113  1  2  101   47   117 0.959   8.08
 5.03 Intr - 106116 105864  253  0  1   61   75   215 0.969  13.58
 5.02 Intr - 117554 117350  205  1  1   56   91   134 0.490   8.78
 5.01 Init - 121992 121907   86  0  2   77   84    81 0.924   5.16
 5.00 Prom - 123138 123099   40                              -7.45

 6.00 Prom + 132626 132665   40                              -5.25
 6.01 Init + 148154 148300  147  1  0   73    9   216 0.126  12.34
 6.02 Intr + 154990 155171  182  0  2   61   67   106 0.009   3.54
 6.03 Term + 172168 172366  199  1  1   68   48   160 0.093   5.89
 6.04 PlyA + 172506 172511    6                              -0.45

 7.03 PlyA - 175296 175291    6                               1.05
 7.02 Term - 175510 175339  172  0  1   68   44   182 0.850   8.12
 7.01 Init - 177583 177438  146  1  2   62  101    92 0.674   7.54
 7.00 Prom - 178297 178258   40                             -11.34

 8.05 PlyA - 178734 178729    6                              -0.45
 8.04 Term - 179625 179342  284  1  2  -67   48   284 0.850   3.50
 8.03 Intr - 180147 179977  171  1  0   76   97    64 0.533   5.09
 8.02 Intr - 207615 207468  148  0  1  -86   72   241 0.538   3.99
 8.01 Init - 209180 209079  102  2  0   68   94   154 0.749  14.29

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  69514  69622  109  1  1  109   43    96 0.881   4.20
S.002 Term - 168738 168541  198  0  0   18   33   219 0.826   5.82


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592r:53028209_53245632|GENSCAN_predicted_peptide_1|51_aa
MCPRGSIRFTFEVQNYRRSTRQCTKAILGPPPPDDGIQAVEEARGESIKEA

>gi568815592r:53028209_53245632|GENSCAN_predicted_CDS_1|156_bp
atgtgcccaagaggctccatacggttcacctttgaagttcaaaattaccgtcgcagcacc
aggcaatgtaccaaggctattttgggcccaccccctccagatgatggaattcaggctgtg
gaagaagccagaggggaatcaataaaagaagcttag

>gi568815592r:53028209_53245632|GENSCAN_predicted_peptide_2|305_aa
MAVRCRISLKSTGSSWADMQMYRQAAMRRKEEGTVACWQDMRNDSDKRPSVTFLSLPLLS
QQAQKKDLIKEEGMRNLVRPDTHLTAEVVQFCSGSSPPQSVTRFFDGSTSTRGQTSREIL
KNIVRHLNESTRRVDEETPDAGSKGDLESHDNCSKCTKDIREKESVLQRKKQANIKNLIL
DKTSQFQPEISEYMTLAYKDFTLCRPETTYWQHNISPPLPRGNDLQVYPLLQPRHSPRLL
HLCLLTPLAVASPQRLFEGPKCDLRLRTNASLQIGSINHQDLEMEAVDGRSEHIKLKIIV
VKTFF

>gi568815592r:53028209_53245632|GENSCAN_predicted_CDS_2|918_bp
atggccgtgaggtgcagaatatccctgaagtccacagggtcttcatgggcagacatgcaa
atgtacaggcaggcagcaatgaggagaaaggaagaaggaacagtggcgtgctggcaggac
atgagaaacgacagtgataagaggccttcagtgaccttcctttcccttccccttctgagt
cagcaggcacaaaagaaggacctcatcaaggaggaagggatgaggaatcttgtaaggccg
gacactcatctcacggccgaagtggttcagttctgcagtggtagcagtcctccccagagt
gtaaccagatttttcgatggcagcaccagcacaagaggccaaacttcaagagaaatatta
aagaacatagtgaggcatctaaatgaaagtacaagaagggtagatgaagaaacaccggat
gctggaagcaaaggagacttggaaagccatgataattgttccaagtgtacaaaggatatc
agagagaaggagtcagtgcttcaaagaaagaagcaggcaaatatcaaaaatttgatactt
gacaagacatcacaattccagcctgaaatctctgagtatatgacattagcatacaaagat
ttcacactgtgtagaccagagaccacatactggcagcataatatttcacccccccttccc
cgtggcaatgacctgcaggtgtaccctctgcttcagcctcgacactctccaagactgctt
catctttgtcttctcactccacttgcagtagcaagtcctcaaagattgtttgaagggccc
aaatgcgatctccgactccgaacgaacgcctcgttgcagatcggctcgatcaaccatcaa
gacttagaaatggaggctgtcgatggacgttctgagcacattaaattaaagataatcgtt
gtgaaaacatttttctga

>gi568815592r:53028209_53245632|GENSCAN_predicted_peptide_3|115_aa
MAFKRSLAEFSVGEAHQAAAITAGPAYGSHLRGAGGQIGARWGGGGCRGLGEWRDARCQP
RRGIVRAPERQPYWRPRTPPRSCPLSCGNLRRRAEHAQCRCCPCGRPGHPSPRAA

>gi568815592r:53028209_53245632|GENSCAN_predicted_CDS_3|348_bp
atggccttcaagcggagcttagcagagttctcggtcggagaagcgcaccaggcagcggca
ataactgcgggcccggcgtacggcagccatcttcgcggggcagggggccagatcggggcg
cgctggggtggcggcggctgccggggactcggggagtggagggacgcccgttgccagccg
aggcgggggattgtgcgagcaccggagcgtcagccctactggagaccccggacgccgccg
cggagctgccccctcagctgcggaaacctgcgccgacgcgccgagcatgcgcagtgccgg
tgctgcccgtgtgggcggcccggccacccatccccgcgggctgcctag

>gi568815592r:53028209_53245632|GENSCAN_predicted_peptide_4|469_aa
MFRAQWMFELAPGVSSSNLENRPCRAARGSLQKTSADTKGKQEQAKEEKGCHLFTIRSKF
VFIISHQIIGITMMTYLLSPLNFYFEIITGPQARELFLKAVEEEQNGALYEAIKFYRRAM
QLVPDIEFKITYTRSPDGDGVGNSYIEDNDDDSKMADLLSYFQQQLTFQESVLKLCQPEL
ESSQIHISVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKVW
GRSCIKLVPYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIR
FFPDGHVMMLTTPEEPQSIVPRLRTRNTRNHLTINTDIFVVSLYKKQIRVFMWGYSYVPV
VTRGSTNSSGYIILVTLLTRIWTQVMSSEFLEDGVTREVGRTHLATKTAFPPTNPAQMSK
SSLAVTPPCGLHGRDRWTKAMTVKVPSGVKATYSLAAPQPIAFTPILLH

>gi568815592r:53028209_53245632|GENSCAN_predicted_CDS_4|1410_bp
atgttccgagctcagtggatgtttgaacttgctccaggtgtaagctctagcaatttagaa
aatcgaccttgcagagcagcaagaggctctctccagaaaacatcggcagataccaaagga
aaacaagaacaggcaaaagaagaaaaaggctgccatctttttaccatcagatccaagttt
gtgtttataattagtcatcaaataattggcattaccatgatgacttaccttctatctcct
cttaatttttattttgaaataattacaggtccacaggctcgagaactcttcctaaaagca
gtagaagaagaacaaaatggagctctctatgaagccatcaagttttatcgtagggctatg
caacttgtacctgatatagagttcaagattacttatacccggtctccagatggtgatggc
gttggaaacagctacattgaagataatgatgatgacagcaaaatggcagatctcttgtcc
tacttccagcagcaactcacatttcaggagtctgtgcttaaactgtgtcagcctgagctt
gagagcagtcagattcacatatcagtgctgccaatggaggtcctgatgtacatcttccga
tgggtggtgtctagtgacttggacctcagatcattggagcagttgtcgctggtgtgcaga
ggattctacatctgtgccagagaccctgaaatatggcgtctggcctgcttgaaagtttgg
ggcagaagctgtattaaacttgttccgtacacgtcctggagagagatgtttttagaacgg
cctcgtgttcggtttgatggcgtgtatatcagtaaaaccacatatattcgtcaaggggaa
cagtctcttgatggtttctatagagcctggcaccaagtggaatattacaggtacataaga
ttctttcctgatggccatgtgatgatgttgacaacccctgaagagcctcagtccattgtt
ccacgtttaagaactaggaataccagaaaccacttgactataaatacagatattttcgtc
gtgtccctgtacaagaagcagatcagagttttcatgtggggctacagctatgttccagtg
gtcaccagaggttcaacaaactcatctggatacatcattcttgtcacattacttacaagg
atctggacacaggtcatgagctcagagtttttagaagatggtgtcactagggaggttgga
aggacccatttggccacaaagacagcatttccacctaccaacccagcccagatgtctaag
tccagcttagctgtgacccctccttgtggactccatggcagagacaggtggacaaaagca
atgactgttaaggtgccatctggggtcaaggccacatacagtctggcagcacctcagcca
attgccttcacccctatcctactccattga

>gi568815592r:53028209_53245632|GENSCAN_predicted_peptide_5|458_aa
MRLSKPFAFSPSHLCLLSLILESLDLPDRKQSPGPRCLSGPIQLYQEPLRTKFSSISEGS
RIGENLGWPDLIMEPDDFDSEDKEILSWDINDVKLPQNVKKTDWFQEWPDSYAKHIYSSE
DKNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCGRDCLAEEGRKIYLRPAICDKARQKQ
QRKRCPNCDGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPKPETKLEAEARRA
MKKVNTAPSSVSLSLKGSTETRSYGLGGITDLTDQTSTVDPMKLYEKRKLSSSRTYSSGD
LLPPSASGVYSDHGDLQAWSKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFY
QQLPLEPPAAKTGCPPLWPNPAGNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYASHPH
QQYSLPSKSSKWDFEEEMTYLGLDHCNNDMLLNLCPLR

>gi568815592r:53028209_53245632|GENSCAN_predicted_CDS_5|1377_bp
atgaggctttccaagccttttgccttctcgccttctcatctctgcctcctaagcctcatc
cttgaaagtctggaccttcctgacagaaaacaatctcctggtccaaggtgcttgagtggg
ccgatccagctatatcaagaacctttgagaacaaaattctcaagcatttctgaggggagt
cgaataggtgaaaaccttggctggcctgaccttatcatggaacctgacgactttgattct
gaagacaaagagatattaagctgggatattaatgatgtgaaactgccacagaacgtgaaa
aaaaccgactggttccaggagtggccagattcctatgccaaacacatctacagctcggag
gacaagaatgcgcagcggcacctgagcagctgggccatgcgcaataccaacaaccacaac
tcccgcatcctcaagaagtcctgcctgggtgtggtggtgtgcggccgcgactgtctcgca
gaggaggggcgcaagatctacctgagacctgccatctgtgacaaggcccggcagaagcag
cagcggaaacgctgtcccaactgtgacgggcctctgaagctcatcccttgccgaggtcat
gggggcttcccggtcaccaacttctggaggcacgacggacgctttatatttttccagtca
aagggagagcatgatcatccaaaaccagaaaccaagttagaagctgaggcaagaagagcc
atgaagaaagtgaacacagcaccttcctccgtctcattgagcctgaaggggagcacagag
accaggagttatggtctgggaggaatcacagatctgactgaccagacttccactgtggac
cccatgaagctctatgaaaagcgcaaattgtccagtagcagaacctacagtagtggagac
ctgcttcctccttctgcctccggagtctactctgatcatggcgatctacaagcgtggagt
aaaaatgctgctttggggagaaatcatcttgctgacaactgttattccaattatcctttt
cctctgaccagctggccttgcagcttctctccttcccaaaactcttcagaacccttttac
cagcagcttccattggagccacctgcagccaaaactggctgtcccccattatggccaaat
ccagcgggtaatctttatgaagagaaagtacatgtggattttaacagctacgtccagtct
cctgcataccattcacctcaagaagacccctttctcttcacctacgcctctcatcctcat
cagcaatattcactgccaagcaagagcagcaaatgggattttgaggaagaaatgacatac
ttgggtttggatcactgcaacaatgatatgcttctgaacctgtgtcctttgagatga

>gi568815592r:53028209_53245632|GENSCAN_predicted_peptide_6|175_aa
MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAALRGVCRAQGS
CVREDVLDSEPGEASVGVLTNSSSKRGGSGSFQPRIEASMASGNWVSRPSRGGKFQQRSH
DRQNLTYLPSDALQRKFAIVVRRTGFWRQWSYLEPEFSSKKMSVITTPSTGCYAN

>gi568815592r:53028209_53245632|GENSCAN_predicted_CDS_6|528_bp
atgtccggcctcgaaggcgggaagaagaagcccctgaaacaaccaaagaagcaagccaag
gagatggacgaggaacaagaggcctccaaacgggaaaaaaaaggagaagcagaagaaacc
caggagctaaaagtgaaggccaaggctgccctgaggggcgtgtgcagagctcagggctcc
tgtgtgagggaggacgttcttgactctgagccaggtgaagccagtgtgggggtgcttaca
aattcgagcagtaagagaggaggttctgggagcttccagcccaggatagaagcctccatg
gcttctggcaactgggtgtccagacccagcagaggtgggaagtttcagcaaagatctcat
gaccgacaaaacctaacgtatttaccatccgacgctttacagagaaagtttgccatcgta
gttaggaggacaggtttttggagacaatggagttacctggagcctgaattttcttctaag
aaaatgagtgtaataacaacgccctcaacaggttgctatgcgaattaa

>gi568815592r:53028209_53245632|GENSCAN_predicted_peptide_7|105_aa
MGESQENDCPVTQQGAGAYRPFFIGEGEMGGAGENDFQGERMDPVLREWEHLLSARHCGE
GQSKAMPENLESGDDVSDVKAQSACVASSKGSSNLYKSKKERRVD

>gi568815592r:53028209_53245632|GENSCAN_predicted_CDS_7|318_bp
atgggggaatcacaagagaatgattgcccagtgacccaacagggtgcaggtgcttatagg
cccttcttcataggggaaggggagatgggaggtgcaggagaaaatgattttcagggggaa
agaatggacccagtgctccgagaatgggaacacctgctgtctgccaggcactgtggggaa
gggcagagtaaagccatgcctgagaacctggagtccggtgatgatgtaagtgatgtcaag
gcccaaagtgcctgtgtggctagttcaaagggctcttcaaatctgtacaaatccaagaag
gagagaagagttgattga

>gi568815592r:53028209_53245632|GENSCAN_predicted_peptide_8|234_aa
MATHWRGTSLGVSKETVQESLQEEVMSELNVEGQEKKAAKPKEKCEKGLAAYRAKGKPDA
AKKGVVKAEKKQEKEEEAEENEEGITELQFGAHTQMGWSSVCPKDKEKVRSFIRKGNITY
GFERKLVGTGEDFGSWQAPIGGCRGKGRISGGLRDGPRKSGTAREVDTGVSRRQSYSGPH
RRWPCLPLRLLPEQLQCDQAVRSHEEEHDDCASAAGHAHGEVGLRKWPLGDADS

>gi568815592r:53028209_53245632|GENSCAN_predicted_CDS_8|705_bp
atggccacacactggcgaggcaccagtcttggtgtgagcaaggagacagtgcaggaaagc
cttcaggaggaggtgatgtcggaactaaatgtggaaggacaggagaagaaggctgcaaag
ccgaaggaaaaatgcgaaaagggtcttgctgcatatcgagctaaaggaaagcctgatgca
gcaaaaaagggagttgtcaaggctgaaaaaaagcaagaaaaagaggaggaagctgaggaa
aatgaagagggaatcacagaattgcaatttggtgcacacacacagatggggtggtcttca
gtgtgtccgaaggacaaagagaaggttaggagttttattagaaagggaaatattacatat
ggttttgaaagaaagctcgttggcactggagaagattttgggagctggcaagctccgatt
ggagggtgccgtgggaagggacgcatcagtggaggtctcagagatggtccccggaaaagt
ggaactgcaagagaagttgatacaggtgtcagcaggagacagtcatatagtggtcctcac
agaagatggccatgtcttcctctgaggctgcttccagaacaattacagtgtgatcaggct
gttagatcccatgaagaagagcatgatgattgtgcaagtgcagctggacatgcccacggt
gaagttggcctcaggaaatggccacttggtgatgctgacagctga