GENSCAN 1.0	Date run:  6-Nov-116	Time: 16:59:45

Sequence gi568815592r:13205104_13426898 : 221795 bp : 44.45% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    712   1033  322  2  1  115   98   260 0.810  24.62
 1.02 Intr +   8647   8720   74  1  2   68   46    88 0.204   1.65
 1.03 Intr +  13652  13815  164  0  2  -96   70   267 0.036   6.19
 1.04 Intr +  17605  17669   65  0  2   51   56    54 0.046  -3.98
 1.05 Intr +  22752  22960  209  0  2   75   43   208 0.346  13.72
 1.06 Intr +  24934  25090  157  2  1  120   91   198 0.853  22.37
 1.07 Term +  27794  27893  100  2  1   82   43    42 0.245  -3.30
 1.08 PlyA +  29654  29659    6                               1.05

 2.03 PlyA -  30246  30241    6                               1.05
 2.02 Term -  33940  33870   71  2  2  120   47    60 0.607   3.20
 2.01 Init -  38857  38725  133  1  1   78   21    92 0.490   1.80
 2.00 Prom -  40681  40642   40                               0.24

 3.00 Prom +  47345  47384   40                              -2.86
 3.01 Init +  55996  56107  112  0  1   53   94    63 0.272   3.78
 3.02 Intr +  67687  67812  126  2  0   45  111    67 0.395   5.35
 3.03 Intr +  73165  73226   62  2  2   55  100    61 0.375   2.45
 3.04 Intr +  78319  78459  141  0  0  125   80   259 0.999  29.35
 3.05 Intr +  81043  81119   77  0  2   74   96    79 0.695   5.61
 3.06 Intr +  89336  89448  113  2  2   52  115    58 0.068   4.92
 3.07 Term +  94515  94630  116  1  2   27   38    92 0.028  -3.17
 3.08 PlyA +  95343  95348    6                               1.05

 4.07 PlyA -  98741  98736    6                               1.05
 4.06 Term - 100084  99998   87  1  0   77   47    43 0.179  -3.24
 4.05 Intr - 102221 102084  138  2  0   53   50    84 0.371   1.76
 4.04 Intr - 111605 111468  138  2  0   74   73   195 0.998  17.26
 4.03 Intr - 115992 115805  188  1  2  121   53   153 0.991  14.51
 4.02 Intr - 123323 123213  111  0  0  123   65   -11 0.458   0.45
 4.01 Init - 123440 123353   88  2  1   11   80   169 0.814   7.20
 4.00 Prom - 123966 123927   40                              -4.86

 5.00 Prom + 127000 127039   40                              -2.56
 5.01 Init + 128330 128344   15  1  0   65  115     4 0.375   1.09
 5.02 Intr + 138916 139021  106  0  1  108   58    82 0.114   6.99
 5.03 Term + 149724 149785   62  1  2  117   36    46 0.472   0.27
 5.04 PlyA + 153039 153044    6                               1.05

 6.00 Prom + 153335 153374   40                              -0.96
 6.01 Init + 155552 155666  115  1  1   26   92    86 0.432   3.18
 6.02 Term + 156252 156352  101  1  2   41   41    93 0.849  -1.81
 6.03 PlyA + 159099 159104    6                               1.05

 7.03 PlyA - 159518 159513    6                               1.05
 7.02 Term - 160559 159640  920  0  2  136   42  2303 0.998 222.88
 7.01 Init - 175389 175293   97  0  1   71   98    -4 0.158  -0.53
 7.00 Prom - 177322 177283   40                              -5.66

 8.00 Prom + 179735 179774   40                              -5.06
 8.01 Sngl + 182240 182689  450  1  0   43   43   240 0.800  11.22
 8.02 PlyA + 182924 182929    6                               1.05

 9.00 Prom + 183304 183343   40                              -4.76
 9.01 Init + 183596 184058  463  1  1   91   40   137 0.113   5.06
 9.02 Intr + 204925 204978   54  2  0  102   92     3 0.040   1.05
 9.03 Term + 205797 205990  194  1  2   69   48    74 0.028  -0.92
 9.04 PlyA + 209523 209528    6                               1.05

10.04 PlyA - 212344 212339    6                               1.05
10.03 Term - 212741 212595  147  2  0   68   42    97 0.325   1.00
10.02 Intr - 219300 219105  196  2  1   49   38   229 0.421  13.42
10.01 Intr - 221117 220940  178  0  1   61   43    79 0.216  -0.32

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592r:13205104_13426898|GENSCAN_predicted_peptide_1|363_aa
XPGAPVKLPCLPVKLSPPLPPKKVMICMPVGGPDLSLVSYTAQKSGQQGVAQHHHTVLPS
QIQHQLQYGSHGQHLPSTTGSLPMHPSGCRMIDELNKTLAMTMQRLESQRLQPSPDSQTC
QRLDLGLSSPDNCCNELFKKKKKKKEEEKKKKEEEEEKKRRRRRRKEKRREEKRREEKRR
EEKRREKDIWQCLKIVLAVTVGGSAAGICSGLHSGDGVTKAGPMGLPEIRQVPTVVIECD
DNKENVPHESDYEDSSCLYTREEEEEEEDEDDDSSLYTSSLAMKVCRKDSLAIKLSNRPS
KRELEEKNILPRQTDEERLELRQQIGTKLTSSATVQGEPQVCEGQMKIYLQMGVRCQSIW
LPQ

>gi568815592r:13205104_13426898|GENSCAN_predicted_CDS_1|1092_bp
natcctggcgcccctgtgaaattgccttgtctgccagtgaaactgtcgcctccgctacct
ccaaagaaagtcatgatctgtatgcccgtgggggggccagacctctcactggtgtcctac
acagcccagaagagtggccagcagggtgtggcccagcaccaccacactgtcctgccctcc
cagatccagcaccagctgcagtacggcagccacggccagcacctcccctccaccaccggc
tccctccccatgcacccctcgggctgcagaatgatagacgagctcaacaaaacgctggcc
atgaccatgcagaggctggaaagccagaggctgcagccctcaccagacagccaaacctgc
cagcgccttgatcttggactttccagccccgacaactgttgcaatgagctatttaaaaag
aagaagaagaagaaggaggaggagaagaagaagaaggaggaggaggaggagaaaaagagg
aggaggaggaggaggaaagagaagagaagagaagagaagagaagagaagagaagagaaga
gaagagaagagaagagaaaaggacatttggcaatgtctgaagattgttttggctgtcaca
gttggaggaagtgctgctggcatctgctctgggttgcactcgggtgatggggtcaccaaa
gcaggacctatgggccttccagaaataagacaagtgccaactgttgtgattgaatgtgat
gacaataaagaaaatgtgcctcatgagtcagactacgaagactcttcttgcctgtataca
agagaagaggaggaagaggaggaggacgaagacgacgacagctcattatacaccagctcc
ctggccatgaaggtctgcaggaaggactccttagccatcaaactcagcaacaggccctcc
aagcgagagctggaagaaaagaacatccttcccaggcagacggatgaggagcggctggag
ctgaggcaacagattggcaccaagctcaccagctctgctacagtacaaggagagccccag
gtatgtgaggggcaaatgaagatttatctgcagatgggagtgagatgccagagcatctgg
ctgccccagtga

>gi568815592r:13205104_13426898|GENSCAN_predicted_peptide_2|67_aa
MEYYAAIKKNEIMFFAVTLMELEAIILSKLTQEQKTKYHMFSLTTEMKMRMRRRMMMVMI
MAHNLKG

>gi568815592r:13205104_13426898|GENSCAN_predicted_CDS_2|204_bp
atggaatactatgcagccataaaaaagaatgagatcatgttctttgcagtaacactgatg
gagctggaggccatcatccttagcaaactaacacaggaacagaaaaccaaataccacatg
ttctcacttacaactgagatgaagatgaggatgaggaggaggatgatgatggtgatgata
atggcgcacaacctcaagggctag

>gi568815592r:13205104_13426898|GENSCAN_predicted_peptide_3|248_aa
MLRTSTVKLCEQKPDWRVTETSSLDHPFERSGSQEQTGPRKLMTQGGYDMVQKLFLDFFR
RRLSQRPTAEELEQRNILKPRNEQEEQEEKREIKRRLTRKLSQRPTVEELRERKILIRFS
DYVEVADAQDYDRRADKPWTRLTAADKAAIRKELNEFKSTEMEVHELSRHLTRHSVRPSS
CTIFFNPYDTLVTDEETQVPKQQRGQSHTDGKLYTLLSNQRQINTAAASEAPQLTQVEGK
ELGKVDFL

>gi568815592r:13205104_13426898|GENSCAN_predicted_CDS_3|747_bp
atgctgagaaccagcacagtaaagctgtgtgaacagaagccagactggagagttactgag
acctcgagcctggaccaccctttcgagaggtctggcagccaagagcagacagggccgagg
aaattaatgacccaaggaggctatgatatggtccaaaaacttttcctggattttttccgt
aggcggctgagccagaggccaactgcagaggaactggaacagaggaacattttgaaacct
cggaatgaacaagaggaacaggaggagaagagagagatcaagaggaggctaacccgaaag
ctcagtcaaaggcccacggtggaagagcttcgggaaagaaagatcctcatccgcttcagt
gactacgtggaggtggctgacgctcaggactatgaccgcagggcagataagccgtggacc
cgcctcaccgctgcagacaaagctgccatccgaaaggagctcaatgaattcaaaagcact
gagatggaagttcatgaattgagtagacacttaacaaggcactctgttaggccatcttca
tgcaccattttctttaacccttacgacaccttggtcaccgatgaggaaactcaggtcccc
aaacaacaacgtgggcaaagtcacacagatgggaaactatacaccctcctgagcaatcag
agacaaataaacacagctgctgccagcgaagccccccagttgacccaggtggaggggaag
gagctgggcaaagtcgactttctgtag

>gi568815592r:13205104_13426898|GENSCAN_predicted_peptide_4|249_aa
MSRPAAAAAAAAAALSFVSRAVWARAGVPGLVPPGPGPQRCPPARRSVSAQGTASSASPG
PLSLNPGILPPHHESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGK
LPRSPSFPLEPDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLKCDKS
SSSRNLSVSFIMISLKKLKAVKDLTKFFQSVSDMSGYFGVQIPQDSSDAIVSKAIDLWHK
HCGTPVHSS

>gi568815592r:13205104_13426898|GENSCAN_predicted_CDS_4|750_bp
atgtcacgtccggcggcggcggcagcggcagcggcagcggcgctgagttttgtctcccgg
gccgtctgggcgcgcgcgggtgtcccaggactcgtccctcctggccctgggccccaacgg
tgcccgcctgcccggcggtcggtcagcgcacagggcacggcttcctctgcttctcccgga
ccacttagtctcaacccgggaatcttgcctccacaccacgagtcccatgccaaggtgatg
atgtatcgtaaggagcagtacttggatgtccttcatgccctgaaagtcgttcgctttgtt
agtgatgccacacctcaggctgaagtctatctccgcatgtatcagctggagtctgggaag
ttacctcgaagtccctcttttccactggagccagatgatgaagtgtttcttgccatagct
aaagccatggaggaaatggtggaagatagtgtcgactgttactggatcacccgacgcttt
gtgaaccaattaaataccaagtaccgggattccttgccccagttgaaatgtgacaaatct
tcctccagtagaaatcttagtgttagtttcatcatgatatctttaaagaagctgaaagca
gtcaaagatttgactaagttcttccagtcagtttcagacatgtctgggtatttcggagtc
cagattccccaggacagctcagacgcgatcgtgagcaaggccattgacttgtggcacaaa
cactgtgggaccccggtccattcaagctga

>gi568815592r:13205104_13426898|GENSCAN_predicted_peptide_5|60_aa
MEQHQASEVPRSPFAFLMVEGFLRPPQKQMPVCLLYSLQNRRCRVLALHSRSDTELLFPG

>gi568815592r:13205104_13426898|GENSCAN_predicted_CDS_5|183_bp
atggaacagcaccaggcttctgaggtgcctcgctccccctttgccttcctcatggttgaa
ggcttcctgaggcctccccagaagcagatgcctgtatgcctcctgtacagcctgcagaac
cggagatgtcgagttttagcacttcacagccggagtgatacagagctgctctttccaggc
tag

>gi568815592r:13205104_13426898|GENSCAN_predicted_peptide_6|71_aa
MGRNTGYFYVQLYSLLAEHQMLHPAEQEGADSRLSGAAGHSHIDGNETGMQELNGKTLKA
LPPCIEALETH

>gi568815592r:13205104_13426898|GENSCAN_predicted_CDS_6|216_bp
atgggaagaaacactggctacttctatgtgcagctctacagcctcctggcagaacatcag
atgttgcatcctgctgaacaggagggtgctgacagcaggctgagtggagccgcaggccat
tcgcacattgatgggaacgaaacaggcatgcaggaactaaatgggaagactcttaaagca
ctgcctccttgcatcgaggcccttgaaacacattaa

>gi568815592r:13205104_13426898|GENSCAN_predicted_peptide_7|338_aa
MIFTWADLGAAVLHFVFIHKSICPGIPGREPYSIGKNVICDRTATPLDAFRMTSAAHYYP
KLMSIMGNVLRFLPAFVRMKQLIEEGYVGEPLVCEVQVHGGSLLGKKYNWSCDDLMGGGG
LHSVGTYIIDLLTFLTGQKAVKVHGLLKTFVKQTDHIKGIRQITSDDFCTFQMVLEGGVC
CTVTLNFNVPGEFKQDVTVVGSAGRLLAVGTDLYGQRNSAPEQELLVQDATPVSNSLLPE
KAFSDIPSPYLRGTIKMMQAVRQAFQDQDDRRTWDGRPLTMAATFDDCLYALCVVDTIKR
SSQTGEWQNIAIMTEEPELSPAYLISEAMRRSRMSLYC

>gi568815592r:13205104_13426898|GENSCAN_predicted_CDS_7|1017_bp
atgatattcacgtgggcagatctgggggctgcagttttgcattttgttttcattcataag
agcatctgcccagggatccctggaagagagccctacagcatcggcaagaacgtcatctgc
gaccgcacggccacgccgctggacgctttccgcatgacctcggccgcccactactacccc
aagctcatgagcatcatgggcaacgtgctgcgcttcctgccggctttcgtgcgcatgaag
cagctgatcgaggagggctacgtgggcgagccgctggtgtgtgaggtgcaggtgcacggc
ggcagcctgctgggcaagaagtacaactggagctgcgacgacttgatgggcggcggcggc
ctgcactccgtgggcacctacatcatcgacctgctcaccttcctcaccggccaaaaggcc
gtcaaggtccacgggctgctcaagaccttcgtgaagcagactgaccacatcaagggcatc
cgacagatcaccagcgatgacttctgcaccttccagatggtgctggagggcggggtgtgc
tgcaccgtcaccctcaacttcaacgtgcccggcgagttcaagcaggatgtcactgtggtg
ggctcagccgggcgcctgctggccgtgggcaccgacctgtacgggcagcgcaacagcgcc
ccggagcaggagctgctggtgcaggacgccacgccggtgagcaactccctgcttccggag
aaggccttcagcgacatcccctcgccctacctgcgcggcaccatcaagatgatgcaggcg
gtgcgccaggccttccaggaccaggacgaccggcgcacgtgggatgggcggcccctcacc
atggccgccaccttcgacgactgcctgtatgccttgtgcgtggtggacaccatcaagagg
tccagccagacgggcgagtggcagaacattgccatcatgaccgaggagccggagctgagc
cccgcctacctgatcagcgaggccatgcgccgcagcaggatgtccctctactgttag

>gi568815592r:13205104_13426898|GENSCAN_predicted_peptide_8|149_aa
MNIDAKILNKILANRIQQHIKKLIHHDQVSFIPRMQGWFNIRKSINVIHHINRTNNKNHM
IISIDAEKAFDKIQQPFMLKTLNKLGIDGTYLKIIRAIYDKPTANIILNGHQLEAFPLKT
GTRQGCPLSPLLFNTVLEVLARASGKKKK

>gi568815592r:13205104_13426898|GENSCAN_predicted_CDS_8|450_bp
atgaacatcgatgcaaaaatcctcaataaaatactggcaaaccgaatccagcagcacatc
aaaaagcttatccaccatgatcaagtcagcttcatccctcggatgcaaggctggttcaac
atacgcaaatcaataaacgtaatccatcacataaacagaaccaacaacaaaaaccacatg
attatctcaatagatgcagaaaaggccttcgacaaaatccaacagcccttcatgctaaaa
actctcaataaactgggtattgatggaacgtatctcaaaataataagagctatttatgac
aaacctacagccaatatcatactgaatgggcaccaactggaagcattccctttgaaaact
ggcacaagacaaggatgccctctctcaccactcctattcaacacagtgttggaagttctg
gccagggcatcaggcaagaaaaagaaataa

>gi568815592r:13205104_13426898|GENSCAN_predicted_peptide_9|236_aa
MGKDFMTKTPKATATKANIDKWDLIKLKSFCTAKETIIRMNRQPTEWEKIFEIYPSDKGL
IARNYKELKQIYKKKTNNPIKKWAKDMNRHFSKEDINAANRHMKKCSSSLVIREMQIKTT
MRYHLTPVRMAIIKKSGNNKCWRRCGEIGNFYTVDWQGKPLRPTEVNIIRKAAQKGPIIT
HTAIQSLISRMQKESFQSNKEASHNCMVNLSFHQEEPSSCKQPACMQTFEYAVIAL

>gi568815592r:13205104_13426898|GENSCAN_predicted_CDS_9|711_bp
atgggcaaagacttcatgactaaaacaccaaaagcaacggcaacaaaagccaacattgac
aaatgggatctaattaaactgaaaagtttctgcacagcaaaagaaactatcatcagaatg
aacaggcaacctacagaatgggaaaaaatttttgaaatctacccatctgacaaagggcta
atagccagaaactacaaagaacttaaacaaatttacaagaaaaaaacaaacaaccccatc
aaaaagtgggcaaaggacatgaacagacacttctcaaaagaagacattaatgcagccaac
agacacatgaaaaaatgctcatcatcactggtcatcagagaaatgcaaatcaaaaccaca
atgagataccatctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacaaa
tgctggagaagatgtggagaaataggaaacttttacactgttgattggcagggtaaacct
ctaaggccaactgaggtaaacatcatcagaaaagcagcacagaagggccccataattact
cacacagcaatacagagtttaatttcacggatgcagaaggaaagctttcaaagtaacaag
gaagcctcacataattgtatggtaaacctgagctttcaccaggaggagcccagctcctgc
aaacagccagcatgtatgcagacctttgagtatgctgtcattgcgttatag

>gi568815592r:13205104_13426898|GENSCAN_predicted_peptide_10|173_aa
XGTAKPGEKGESWRLNHSLTNLLSTSAGCLESSVIFASRIVCPGDLEVELLQKPNWHCLA
GFKISVDVITVVTIIIIIIIFLMFGKSVKEMSIPRTNASGLCEGSLQPIVEAKFLATRPE
LSNGVVLNPDMHCCFDKNMATDIVTHAMVERIHIPGIILLLHLREAIPGLKAL

>gi568815592r:13205104_13426898|GENSCAN_predicted_CDS_10|522_bp
ngaggcacagccaagccaggggagaagggagagagctggagactgaatcatagcctgact
aacctgctttccacgtctgctggctgcctagaaagctctgtgatatttgcatctcgcatc
gtgtgccctggagacttagaggtagagctacttcagaaacccaactggcactgcctggca
ggatttaagataagcgttgatgtgatcaccgtggtcaccatcatcatcatcatcatcatc
ttcctaatgtttggcaaatctgttaaagaaatgagcatacccagaaccaatgcatcaggg
ttatgtgagggcagcctccaacccattgtagaggcaaaatttttggccactagacctgag
ctcagcaatggagtggttctgaacccagacatgcattgttgtttcgacaaaaacatggca
actgatattgttactcatgctatggttgaaagaatccatattccgggaattattctcctg
ctgcacttacgagaagccattcctgggctcaaggctctgtga