GENSCAN 1.0	Date run:  4-Nov-116	Time: 02:35:40

Sequence gi568815592f:63111557_63311880 : 200324 bp : 37.68% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +   3257   3296   40                              -3.45
 1.01 Init +   7464   7525   62  2  2   94  116    80 0.734  12.17
 1.02 Term +  16796  16817   22  2  1  131   38    23 0.066  -1.59
 1.03 PlyA +  19400  19405    6                               1.05

 2.07 PlyA -  20428  20423    6                               1.05
 2.06 Term -  22744  22536  209  2  2   74   45   268 0.914  17.62
 2.05 Intr -  23416  23328   89  0  2   36  108    85 0.436   4.00
 2.04 Intr -  24440  24235  206  2  2   41   95   222 0.965  15.28
 2.03 Intr -  24737  24639   99  2  0   59   86    57 0.243   1.99
 2.02 Intr -  28923  28782  142  2  1   83   10   168 0.065   7.93
 2.01 Init -  44137  43995  143  1  2   45   87    67 0.311   2.00
 2.00 Prom -  46507  46468   40                              -5.35

 3.00 Prom +  47953  47992   40                              -6.95
 3.01 Init +  52244  52302   59  1  2   56   53    94 0.303   1.55
 3.02 Intr +  56257  56373  117  1  0   43   84    85 0.472   2.26
 3.03 Intr +  56689  56838  150  1  0   -6   50   170 0.246   2.16
 3.04 Intr +  71120  71299  180  2  0   56   56   109 0.014   2.56
 3.05 Intr +  81298  81428  131  1  2   36   73   142 0.000   6.92
 3.06 Intr +  81567  81853  287  1  2   22   42   191 0.000   4.04
 3.07 Intr +  81929  82086  158  1  2   59   80   179 0.000  12.09
 3.08 Intr +  91879  92062  184  1  1   85   39   134 0.007   7.07
 3.09 Term +  93071  93139   69  1  0   81   37    85 0.018  -0.34
 3.10 PlyA +  94151  94156    6                               1.05

 4.00 Prom +  94977  95016   40                              -8.35
 4.01 Sngl +  99890 100327  438  1  0   46   48   446 0.967  32.41
 4.02 PlyA + 101437 101442    6                               1.05

 5.04 PlyA - 102281 102276    6                               1.05
 5.03 Term - 113452 113285  168  1  0   64   54    98 0.476   0.90
 5.02 Intr - 117143 117044  100  1  1   -2   53   120 0.477  -1.31
 5.01 Init - 118555 117753  803  1  2   56   59   383 0.394  25.02
 5.00 Prom - 120717 120678   40                              -3.65

 6.00 Prom + 125940 125979   40                              -1.45
 6.01 Init + 131255 131317   63  1  0   72   92    25 0.533   2.50
 6.02 Intr + 132824 132971  148  1  1   72   71    98 0.844   5.39
 6.03 Intr + 162676 162788  113  2  2   39   54    99 0.032   0.78
 6.04 Intr + 163771 163961  191  0  2   64  100   148 0.544  11.06
 6.05 Term + 165158 165176   19  2  1  103   49     0 0.324  -5.59
 6.06 PlyA + 165963 165968    6                               1.05

 7.04 PlyA - 166698 166693    6                               1.05
 7.03 Term - 169664 168465 1200  2  0  114   39   843 0.998  72.69
 7.02 Intr - 174145 174031  115  0  1  109   89    90 0.788  10.73
 7.01 Init - 175982 175876  107  2  2   80   38    82 0.286   0.14
 7.00 Prom - 178026 177987   40                              -7.55

 8.00 Prom + 178184 178223   40                              -3.25
 8.01 Init + 178352 178440   89  1  2   68   87    40 0.816   2.10
 8.02 Term + 179750 180212  463  2  1   98   48   211 0.945  11.64
 8.03 PlyA + 181233 181238    6                               1.05

 9.05 PlyA - 181619 181614    6                               1.05
 9.04 Term - 181923 181831   93  0  0   79   38    37 0.485  -5.35
 9.03 Intr - 182300 182098  203  0  2   73   95   122 0.209   9.48
 9.02 Intr - 183489 183357  133  0  1   58   25    78 0.255  -2.20
 9.01 Intr - 188679 188537  143  1  2   43   92   140 0.043   9.05

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  79278  79012  267  0  0   45   47   204 0.803   6.99
S.002 Sngl -  82075  81620  456  1  0   86   49   426 0.847  34.43


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592f:63111557_63311880|GENSCAN_predicted_peptide_1|27_aa
MELPVDQQAFKKTLPDLESGRLFDVGI

>gi568815592f:63111557_63311880|GENSCAN_predicted_CDS_1|84_bp
atggagcttcctgttgatcaacaggcatttaaaaaaacattacctgatttggaatccgga
agactttttgatgtaggcatttaa

>gi568815592f:63111557_63311880|GENSCAN_predicted_peptide_2|295_aa
MEPAAAIHLLQRVCGFSQLSWYVPVVVLGAKVHSVGLHTLLCLSEWELAVGSSVMSSRLR
NAIQESSPGIKDPKNLVGALLLCGCAATGGQYISETHPVVISPVPECIIGIDILSSWQNP
YIGSLTVRTDRSRRITVDYCQLNRVVTPIAVAVPDVVLLLEQINTSPSTWYAAIDLANAF
FSVPVHKAHQKQFAFSCHKVGHAQQHSIIKWKWYICDWARADPEDTTIPVIAQWAHEQSG
HGGRDGGYAWAQQCGLPLTKADLAMATAECPICQQLRPTLSPRYDTIPRGDQPAT

>gi568815592f:63111557_63311880|GENSCAN_predicted_CDS_2|888_bp
atggagcctgcagcagcaattcacctccttcaaagagtctgtggattctctcagctttcc
tggtatgttcctgttgtagttcttggtgcaaaagttcacagcgtgggtctccacacactg
ctctgtctgtctgagtgggagctggcagtgggctcatctgtgatgtcaagcaggttgaga
aatgccatccaagagtcaagtcctggaattaaggaccccaaaaacctggttggtgctcta
ctcctctgtggctgtgctgctaccggaggacagtacatctcagagactcatcctgtagtc
atttccccagtgccagaatgcataattggcatagacatacttagcagctggcagaaccct
tacattggctccctgactgttaggacagatagatctcgaagaataacagtggattattgt
cagcttaaccgagtggtgactccaattgcagttgctgtcccagatgtggttttattgctt
gagcaaattaacacatcccctagtacctggtatgcagccattgacttagcaaatgccttt
ttctccgttcctgtccataaggcccaccagaagcaatttgccttcagctgtcataaagtg
ggtcatgcacagcagcattccatcattaaatggaagtggtatatatgtgactgggctcga
gcagatcctgaagacacaactatccctgtcattgcccaatgggcccatgaacaaagtggc
catggtggcagggatggaggttatgcatgggctcagcaatgtggacttccactcaccaag
gctgacctggctatggccactgctgagtgcccaatttgccagcagctgagaccaacactg
agccctcgatatgacactattcctcgtggtgatcagccagcgacctga

>gi568815592f:63111557_63311880|GENSCAN_predicted_peptide_3|444_aa
MAAHHLGCGEPLCLAALSGKQTGSGVELQQTPTDLQLRDLTVRRKTKKQKGIASTSTKRI
NSVEKTLNDLMELKTMTRELCDTCTSFNSRFDKVEERVSVIEDQINEIKSNKSYFIKKFD
RGSLKMPFQRKKKKKKEKEKEVEEQEEEKPWQGQPATSCFFQKAHGLLRFPQEQACVPLT
SQYAAEKQIGDYVVQTSTKDSKMPPHVYVKQLFLHQPLHVAKLHLQLQLLLAQSLQLPSK
VIDVALQHVVHVAPSHLLLLQEAPLGLQHLVPLLQELYLVDEGGKLAESLNLLLLLGAHG
LDVWVHLQGTLESAAAYSGEAQGANVSPRPPGIRAPTEGPGDRGGRLVGLLGQPDGHGGG
RSYIQVTLMQKVGSHGIKQLCPCGFAQYSLPPSCFQGLALSICRFSRCTMQAVSSCTILG
SGVSFQVNNVPGKAADTPGANLPF

>gi568815592f:63111557_63311880|GENSCAN_predicted_CDS_3|1335_bp
atggccgcccatcatctgggatgtggggagcccctctgcctggccgccctgtctgggaag
caaacagggtctggagtggaactccagcaaactccaacagacctgcagctgagggacctg
actgttagaaggaaaactaagaaacagaaaggaatagcatcaacatcaacaaaaagaatc
aacagtgtagagaagaccttaaatgacctgatggagctgaaaaccatgacacgagaactt
tgtgacacatgcacaagcttcaatagccgatttgataaagtggaagaaagggtatcagtg
attgaagatcaaattaatgaaataaagagtaataagagttacttcattaagaaatttgac
agaggtagtctaaagatgcctttccaaaggaaaaagaagaagaaaaaggagaaggaaaag
gaggtggaagagcaggaggaggagaagccatggcaaggacaacctgctacttcatgtttt
tttcaaaaggcccatggtcttttaaggttcccacaggaacaagcatgcgtacctcttact
tctcagtatgctgcagagaaacaaataggagattatgttgtgcagacttcaacaaaggac
agtaagatgccccctcatgtttatgttaagcagctatttctccaccagcccctgcatgtt
gccaagctccacctccagcttcagcttctcctagcccagagtctccagctgccatcgaag
gttattgatgtagctctccaacatgttgtccatgttgctccaagccatctcctgctgctg
caggaggctccacttggtcttcagcatcttgttccgctccttcaggaactgtaccttgtc
gatgaaggaggcaaacttgctgagagtcttaatctgcttcttctcctgggtgcacacggc
ctggatgtttgggtccacctccagggtaccctggaatctgctgctgcctactcgggagaa
gctcaaggagccaatgtgagccccaggccccctggcataagagcacctactgaaggtccc
ggggatagaggtggacgccttgtaggacttctgggtcaacctgatggacatggtggaggc
aggtcttacatccaggtcacactgatgcaaaaggtgggttcccatggtattaagcagctc
tgcccctgtggctttgcacagtacagcctccctcccagctgctttcaagggctggcattg
agtatctgcaggttttccaggtgcacaatgcaagctgtcagcagctgtaccatcctgggg
tctggggtatctttccaggtgaacaatgtacctggaaaagctgcagatactcctggtgcc
aatttaccgttttag

>gi568815592f:63111557_63311880|GENSCAN_predicted_peptide_4|145_aa
MGRQRAEGLGRAVEPPPGRCRSTPPVALPARSASAAAMGVHVETISPGDWRTFPKRSQTC
VMHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVVQMSVGQRAKLTISPDYAY
GATGHPGIIPPHATLVFDVELLKLE

>gi568815592f:63111557_63311880|GENSCAN_predicted_CDS_4|438_bp
atgggcaggcaacgcgctgagggactaggcagagccgtggaaccgccgccaggtcgctgt
cggtccacgccgcccgtcgcgctgcccgcccgctcggcgtcggccgccgccatgggagtg
cacgtggaaaccatctccccaggagactggcgcaccttcccgaagcgcagccagacctgc
gtgatgcactacaccgggatgcttgaagatggaaagaaatttgattcctcccgggacaga
aacaagccctttaagtttatgctaggcaagcaggaggtgatccgaggctgggaagaaggg
gttgtccagatgagtgtgggtcagagagccaaactgactatatctccagattatgcctat
ggtgccactgggcacccaggcatcatcccaccacatgccactctcgtcttcgatgtggag
cttctaaaactggaatga

>gi568815592f:63111557_63311880|GENSCAN_predicted_peptide_5|356_aa
MRLSLIPRNTGTPQRVLPPVVWSSPSRKKPLLSACNSMMFGHLSPVRIPYLRGKFNLQLP
SLVEQVIPARLPKTEVRAEEPKEATKVKYQVETQGQKDNKRGPCSNGEAAFTSGPLETQG
NLTSSWYNPRPLEGNVHLNSLAEKNQTDKAQVYAVSFYSKGHGVSSSHSPAGGILPFGKP
DPLPTVVPAPVPGCSLWPEKAALKVLGKDHLPSSPCLLMLGEDMQPKDPAALGSSRSSPP
RAVSHRSCKRKLSGPPLQLQPTPPLQLRLPPCLGSEERLCPAAVLSAKRGVPLPSPLTLW
ERHTLGTSQNTFSEELENWKKCREEEKVKKVLRDRIIEEARSAEESEYRKREIYGC

>gi568815592f:63111557_63311880|GENSCAN_predicted_CDS_5|1071_bp
atgaggctgagtcttatccctcggaacacgggcaccccacagagggtcctgcctcctgtg
gtctggagctccccctcaaggaagaaacccttgctgtctgcttgcaactccatgatgttt
ggacacctcagccccgtgaggatcccttatctcagaggcaagtttaaccttcaacttcct
tcattagttgagcaggtgatcccagccaggctcccgaagacagaggtgagggcagaagag
cccaaagaagcaacgaaggtgaaataccaagtagagacccaggggcagaaggacaataaa
aggggcccctgtagcaatggggaagcagccttcacctctgggcccctggagactcaggga
aacctcacttcctcctggtacaatcccaggcccttggagggaaatgtccacctcaacagc
ttggcagaaaagaaccagactgacaaggcccaggtgtatgcagtgagtttctactccaag
ggccatggagtctccagttcacacagccctgctggaggcatccttccctttgggaagcct
gacccacttccaacagtggtccctgccccagttccgggctgctccctgtggccagagaag
gcggccttgaaggtgctgggtaaagaccacctgcccagctctccatgcttgctgatgctg
ggggaggacatgcagcccaaggatcctgcagctcttggatcaagtaggtcttctccaccc
agagctgtcagccacaggtcctgcaaaagaaaactgtcggggccaccgctgcagctgcaa
ccgacccctcccctgcaactgaggctgccgccctgtctgggaagtgaggagcgcctctgc
ccagctgccgtcctgtctgcgaagcgaggagtgcctctgcccagcccccttacactctgg
gaaagacatacactagggacctcacaaaataccttcagtgaggaactggaaaactggaag
aagtgcagagaagaagaaaaggtcaagaaggtcctgagggacaggataattgaggaagca
agaagtgcagaggaaagtgagtacagaaagagggaaatttatggatgctga

>gi568815592f:63111557_63311880|GENSCAN_predicted_peptide_6|177_aa
MHHGNVAKQVIHLLQDLQNGYTPKRPPKVEFAKFKNISSSLYIVLAKANTIGIQHSLPGD
TEVLEEPISQEVKLQTFAVSVTAHKGSVDPKSEGSKIYCKERRNKPSTQAEGAGSGLGQP
GKGLPQCSGGLKGSSSAAKVGAQAEEAPRASEGCEDCQHAVTSQWQQEKLGSMMAPS

>gi568815592f:63111557_63311880|GENSCAN_predicted_CDS_6|534_bp
atgcaccacgggaatgtagctaagcaggtcatccatcttttacaagaccttcagaatggt
tatacacctaaaaggcctccaaaagttgagtttgccaaatttaagaacatttcaagctca
ctttatatcgttttggcaaaagctaatacaataggaatccagcacagtttacctggggac
actgaagttcttgaagagcccatttcgcaagaagtgaagctgcagaccttcgcggtgagt
gttacagctcataaaggcagtgtggacccaaagagtgagggcagcaagatttattgcaaa
gagcgaaggaacaaaccttccacgcaagctgagggagccggctccggccttggccagccc
ggaaagggactcccacagtgcagcggcgggctgaagggctcctcaagtgccgccaaagtg
ggagcccaggcagaggaggcgccgagagcaagcgagggctgtgaggactgccagcacgct
gtcacctctcaatggcagcaagagaaattgggaagtatgatggctcccagctga

>gi568815592f:63111557_63311880|GENSCAN_predicted_peptide_7|473_aa
MGFCYVAQAGLELAQAGLELLAPSDLPTSLLLVLQEMKHIRQAMAKNRLQFVRFEATDLH
GVSRSKTIPAHFFQEKVSHGVCMPRGYLEVIPNPKDNEMNNIRATCFNSDIVLMPELSTF
RVLPWADRTARVICDTFTVTGEPLLTSPRYIAKRQLSHLQASGFSLLSAFIYDFCIFGVP
EILNSKIISFPALTFLNNHDQPFMQELVDGLYHTGANVESFSSSTRPGQMEISFLPEFGI
SSADNAFTLRTGVKEVARKYNYIASFFIETGFCDSGILSHSLWDVDRKKNMFCSTSGTEQ
LTITGKKWLAGLLKHSAALSCLMAPSVSCRKRYSKDRKDLKKSVPTTWGYNDNSCIFNIK
CHGEKGTRIENKLGSATANPYLVLAATVAAGLDGLHSSNEVLAGPDESTDFYQVEPSEIP
LKLEDALVALEEDQCLRQALGETFIRYFVAMKKYELENEEIAAERNKFLEYFI

>gi568815592f:63111557_63311880|GENSCAN_predicted_CDS_7|1422_bp
atggggttttgctatgttgcccaggctggtcttgaactggcccaggctggtcttgaactc
ctggccccaagtgatctgcccacctcactcctgctggtattacaggaaatgaaacacatt
agacaagccatggccaaaaatcgcctccagtttgtacgatttgaagcaacagacctccac
ggcgtgtccaggtctaagactatccctgcacacttttttcaagagaaagtgagccatggt
gtttgcatgccccgaggttatcttgaagtgataccaaatccaaaggacaatgaaatgaat
aacataagagccacatgttttaatagcgacatagtcctaatgccagagttatcaaccttt
agagttttgccatgggctgacagaactgcaagagtgatatgtgataccttcactgtgact
ggtgagcctcttttgacttccccaaggtacattgcaaagaggcagctgagccatctgcag
gcctctggcttttccctgctttctgctttcatctatgatttttgcatttttggtgtgccc
gaaattttaaattcaaagattatatcttttcctgctttaacatttttaaataaccatgat
cagcccttcatgcaggaacttgttgatggcttgtatcacactggagccaatgtcgagagt
ttttcctcctctaccaggcctggtcagatggaaatctctttcctgcctgaatttggcatt
agctcagctgataatgcatttaccctcagaacaggtgtcaaagaagtggcaaggaaatat
aattacattgccagcttcttcattgagactggattttgtgattcagggattttgtctcat
agtctctgggatgtcgataggaagaaaaacatgttctgcagcacttctggaactgagcag
ctcacgatcactgggaaaaaatggttggcaggactcttgaagcactctgctgcgctcagc
tgcctgatggcgccttctgttagctgccgaaagcgttattccaaggacaggaaagacctg
aagaagagtgtgcctacaacatggggatacaatgacaacagctgtatatttaatatcaaa
tgtcatggagagaaaggcacccggatagaaaataaactaggctcagcaacagcaaaccct
tacttggtgctggctgcaactgttgctgccggcttagatggacttcatagcagtaatgag
gtcttggctggtccagatgagagcacagacttttaccaagtggaaccttctgagatccct
ttaaaactagaagatgcccttgtggcactggaagaagatcaatgcctgagacaggctcta
ggagaaacctttattcgatattttgttgccatgaagaaatatgagttggagaatgaagaa
atagctgcagagagaaataaattcttagagtattttatttag

>gi568815592f:63111557_63311880|GENSCAN_predicted_peptide_8|183_aa
MVRATLFVLPSGHIILAQTLLESPGGRITRYLAPCPESRKKQVTWTRRMVNVGILLSDGG
GSQWDGWGAGNGMEWEYDFPLEFGCPATDLLSDRPQLNSSPPSDAPSLSAILFSCSVSGA
WGLYGHRIGTWWARVVLEKATFWNKNRNVCSYSGPWVSRLEGGAFARGLPSSMQYFPASF
RYQ

>gi568815592f:63111557_63311880|GENSCAN_predicted_CDS_8|552_bp
atggtgagagccaccctgtttgtgctaccttctggccacatcatattagcgcagacattg
ttggaaagcccaggtggcagaataaccaggtacctggctccttgtccggagtccaggaag
aaacaggtcacatggactagaaggatggtgaatgtggggattttactgagtgatggaggt
ggctctcagtgggatggttggggagcaggaaatgggatggagtgggaatatgactttccc
ctggagttcggctgtcccgcgacggatctcctctccgaccgtccccagctgaactcctcc
ccaccttcagatgctccttccctctctgccattctgttctcctgctctgtcagtggagct
tggggtttatatgggcataggatagggacatggtgggccagagtggtcttggaaaaggca
acattttggaacaaaaacagaaatgtctgttcctattcagggccatgggtttccaggctt
gagggtggggcctttgccaggggactgccctcttctatgcagtatttccctgcctctttt
cggtatcagtag

>gi568815592f:63111557_63311880|GENSCAN_predicted_peptide_9|190_aa
XVESRTEDRAMKRMSGGSNPSQHGQQAKLEEEGQGHSGLGCVLLLVAQDSTRDEGNETEA
NSMNTLRRTRKKVTKPYVCSTEVGETDMSNSNERIRNQMVCHKLGNTSKPIMGPGSAESH
LSYDDKDSQDETTVIKPLPPRTTTNVPGGEFNPNSGKDLLAVHLENRGVAMEDVLPFLKV
KSYYSKFLAY

>gi568815592f:63111557_63311880|GENSCAN_predicted_CDS_9|573_bp
ngtgtagagtcaaggactgaggacagagctatgaaaaggatgtctggaggatccaacccc
tctcagcatggccagcaggcaaagctggaggaggaagggcagggccatagtgggcttggc
tgtgtcctgctgctagtggcccaggactcaacaagagatgaaggcaatgagactgaagcc
aacagcatgaacacattaagaaggacaaggaagaaagtcactaaaccatatgtttgttca
actgaagtgggagaaacggatatgtccaattcaaatgagaggatcagaaaccaaatggtg
tgccacaaattagggaacacaagcaaacctatcatgggacctggctctgctgagtctcat
ctgtcatatgatgacaaggactctcaggatgagacaacagtgataaaacctttgcccccc
agaacaacaaccaatgttcctggaggtgaatttaacccaaactctggtaaggatttactg
gctgttcatctggaaaatagaggggttgcaatggaagatgtcttgccttttctaaaagta
aaatcctattattctaagtttctggcttattaa