GENSCAN 1.0	Date run:  6-Nov-116	Time: 00:02:52

Sequence gi568815591r:65860900_66082183 : 221284 bp : 44.44% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  12332  12666  335  1  2   53   68   436 0.372  34.87
 1.02 Intr +  31188  31255   68  0  2   53   75    69 0.013   0.65
 1.03 Term +  78406  78635  230  2  2    7   43   252 0.618   9.39
 1.04 PlyA +  81166  81171    6                               1.05

 2.00 Prom +  90852  90891   40                              -2.06
 2.01 Init +  92420  92513   94  1  1   76    6    28 0.174  -6.06
 2.02 Term +  93175  93401  227  2  2  131   48   329 0.865  30.14
 2.03 PlyA +  93896  93901    6                               1.05

 3.14 PlyA -  94955  94950    6                               1.05
 3.13 Term -  95279  95159  121  1  1  101   45    82 0.538   3.15
 3.12 Intr - 100164 100053  112  1  1   94   68    62 0.638   4.24
 3.11 Intr - 103559 103424  136  2  1   71   84   144 0.968  12.44
 3.10 Intr - 107008 106832  177  1  0   75  115   214 0.997  22.92
 3.09 Intr - 109467 109383   85  2  1   92   72    52 0.984   3.82
 3.08 Intr - 113542 113396  147  0  0  116   81   131 0.992  14.55
 3.07 Intr - 113805 113627  179  0  2   95   78   395 0.999  37.92
 3.06 Intr - 114172 114020  153  1  0   89   33   226 0.992  17.47
 3.05 Intr - 115303 115116  188  2  2  147   80   157 0.976  20.21
 3.04 Intr - 118642 118500  143  0  2   49   65   263 0.924  20.10
 3.03 Intr - 119012 118828  185  2  2   96   39   256 0.917  20.09
 3.02 Intr - 119510 119325  186  2  0   93   49   260 0.982  22.49
 3.01 Init - 121284 121075  210  0  0   98   64   466 0.999  41.99
 3.00 Prom - 128191 128152   40                              -5.66

 4.00 Prom + 129228 129267   40                              -2.86
 4.01 Init + 132523 134133 1611  0  0   39   38   433 0.741  25.77
 4.02 Intr + 177626 177779  154  1  1   91   42   105 0.026   5.85
 4.03 Term + 182939 182964   26  0  2  106   55    19 0.014  -1.21
 4.04 PlyA + 184551 184556    6                               1.05

 5.02 PlyA - 184595 184590    6                               1.05
 5.01 Sngl - 210419 210066  354  2  0   68   49   286 0.811  18.75
 5.00 Prom - 211458 211419   40                              -8.06

 6.00 Prom + 212771 212810   40                             -10.15
 6.01 Init + 214809 214957  149  2  2   69  105   145 0.998  11.86
 6.02 Intr + 215140 215194   55  1  1   67  105    90 0.745   7.58
 6.03 Intr + 220904 221098  195  1  0   56   75   237 0.775  18.81

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 183562 183496   67  1  1   87   52    93 0.910   4.87


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591r:65860900_66082183|GENSCAN_predicted_peptide_1|210_aa
MGRGGGGGGGGGGGGGGGGGGGGWVGPRRAAAAEVEAEGGGGGGGGKMAAPVLLRVSVPR
WERVARYAVCAAGILLSIYAYHVEREKERDPEHRALCDLGPWVKCSAALASSFIHIVEND
GIAFILMAEQYCIVSKEVKGVLETGGGRGGDLVEVTSLVMVAFMPTMMVVDMVAVGMAIM
DLVIMEAILDVVEVTVILAVTTVSLQILDL

>gi568815591r:65860900_66082183|GENSCAN_predicted_CDS_1|633_bp
atggggcgcggcggcggcggcggcggtggtggcggcggcggcggaggcggcggtggcggc
ggtggcggctgggtcgggccccgacgggcggcggcggctgaggtggaggcggagggaggc
ggcggcggcggcggcgggaagatggcggctcccgtcctgctaagagtgtcggtgccgcgg
tgggagcgggtggcccggtatgcagtgtgcgctgccggaatcctgctctccatctacgcc
taccacgtggagcgggagaaggagcgggaccccgagcaccgggccctctgcgacctgggg
ccctgggtgaagtgctccgccgcccttgcctccagttttatccatattgttgaaaatgac
gggattgcattcattctcatggctgaacagtactgcattgtgtccaaagaagtaaaaggg
gtcctggaaactggtggtggtcgtggaggtgatttggtggaagtgacaagtttggtcatg
gtggctttcatgccaaccatgatggtggtggatatggtggcagtggggatggctatcatg
gatttggtaataatggaagcaattttggatgtggtggaagtgacagtgattttggcagtt
acaacagtcagtcttcaaattttggacctataa

>gi568815591r:65860900_66082183|GENSCAN_predicted_peptide_2|106_aa
MEKQILLSTDGQDVVKVQRRFSPNVCSSEEKGMTASAVAALILMTSSIMSVVGSLYLAYI
LYFVLKEFCIICIVTYVLNFLLLIINYKRLVYLNEAWKRQLQPKQD

>gi568815591r:65860900_66082183|GENSCAN_predicted_CDS_2|321_bp
atggaaaagcaaattttactttccacagatgggcaggatgtagtgaaagtccagagaagg
ttctcaccaaatgtgtgcagctcggaagaaaaaggcatgacagcaagcgctgtggcggct
ttgatcctcatgacgtcctccatcatgtcggtcgtggggtccctgtacctggcctacatt
ctgtactttgtgctgaaggagttctgcatcatctgcatcgtcacgtacgtgctgaacttc
cttcttctcattatcaactacaaacgactagtttacttgaacgaggcctggaagcggcag
ctgcaacccaagcaggactga

>gi568815591r:65860900_66082183|GENSCAN_predicted_peptide_3|673_aa
MARGSAVAWAALGPLLWGCALGLQGGMLYPQESPSRECKELDGLWSFRADFSDNRRRGFE
EQWYRRPLWESGPTVDMPVPSSFNDISQDWRLRHFVGWVWYEREVILPERWTQDLRTRVV
LRIGSAHSYAIVWVNGVDTLEHEGGYLPFEADISNLVQVGPLPSRLRITIAINNTLTPTT
LPPGTIQYLTDTSKYPKGYFVQNTYFDFFNYAGLQRSVLLYTTPTTYIDDITVTTSVEQD
SGLVNYQISVKGSNLFKLEVRLLDAENKVVANGTGTQGQLKVPGVSLWWPYLMHERPAYL
YSLEVQLTAQTSLGPVSDFYTLPVGIRTVAVTKSQFLINGKPFYFHGVNKHEDADIRGKG
FDWPLLVKDFNLLRWLGANAFRTSHYPYAEEVMQMCDRYGIVVIDECPGVGLALPQFFNN
VSLHHHMQVMEEVVRRDKNHPAVVMWSVANEPASHLESAGYYLKMVIAHTKSLDPSRPVT
FVSNSNYAADKGAPYVDVICLNSYYSWYHDYGHLELIQLQLATQFENWYKKYQKPIIQSE
YGAETIAGFHQDPPLMFTEEYQKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTEQSPTR
VLGNKKGIFTRQRQPKSAAFLLRERYWKIANETRHQMANQYFLEFFNYFRMQEQYIHTPT
AIERFTFMGKHKS

>gi568815591r:65860900_66082183|GENSCAN_predicted_CDS_3|2022_bp
atggcccgggggtcggcggttgcctgggcggcgctcgggccgttgttgtggggctgcgcg
ctggggctgcagggcgggatgctgtacccccaggagagcccgtcgcgggagtgcaaggag
ctggacggcctctggagcttccgcgccgacttctctgacaaccgacgccggggcttcgag
gagcagtggtaccggcggccgctgtgggagtcaggccccaccgtggacatgccagttccc
tccagcttcaatgacatcagccaggactggcgtctgcggcattttgtcggctgggtgtgg
tacgaacgggaggtgatcctgccggagcgatggacccaggacctgcgcacaagagtggtg
ctgaggattggcagtgcccattcctatgccatcgtgtgggtgaatggggtcgacacgcta
gagcatgaggggggctacctccccttcgaggccgacatcagcaacctggtccaggtgggg
cccctgccctcccggctccgaatcactatcgccatcaacaacacactcacccccaccacc
ctgccaccagggaccatccaatacctgactgacacctccaagtatcccaagggttacttt
gtccagaacacatattttgactttttcaactacgctggactgcagcggtctgtacttctg
tacacgacacccaccacctacatcgatgacatcaccgtcaccaccagcgtggagcaagac
agtgggctggtgaattaccagatctctgtcaagggcagtaacctgttcaagttggaagtg
cgtcttttggatgcagaaaacaaagtcgtggcgaatgggactgggacccagggccaactt
aaggtgccaggtgtcagcctctggtggccgtacctgatgcacgaacgccctgcctatctg
tattcattggaggtgcagctgactgcacagacgtcactggggcctgtgtctgacttctac
acactccctgtggggatccgcactgtggctgtcaccaagagccagttcctcatcaatggg
aaacctttctatttccacggtgtcaacaagcatgaggatgcggacatccgagggaagggc
ttcgactggccgctgctggtgaaggacttcaacctgcttcgctggcttggtgccaacgct
ttccgtaccagccactacccctatgcagaggaagtgatgcagatgtgtgaccgctatggg
attgtggtcatcgatgagtgtcccggcgtgggcctggcgctgccgcagttcttcaacaac
gtttctctgcatcaccacatgcaggtgatggaagaagtggtgcgtagggacaagaaccac
cccgcggtcgtgatgtggtctgtggccaacgagcctgcgtcccacctagaatctgctggc
tactacttgaagatggtgatcgctcacaccaaatccttggacccctcccggcctgtgacc
tttgtgagcaactctaactatgcagcagacaagggggctccgtatgtggatgtgatctgt
ttgaacagctactactcttggtatcacgactacgggcacctggagttgattcagctgcag
ctggccacccagtttgagaactggtataagaagtatcagaagcccattattcagagcgag
tatggagcagaaacgattgcagggtttcaccaggatccacctctgatgttcactgaagag
taccagaaaagtctgctagagcagtaccatctgggtctggatcaaaaacgcagaaaatac
gtggttggagagctcatttggaattttgccgatttcatgactgaacagtcaccgacgaga
gtgctggggaataaaaaggggatcttcactcggcagagacaaccaaaaagtgcagcgttc
cttttgcgagagagatactggaagattgccaatgaaaccagacaccagatggccaatcag
tactttctagagttctttaactacttcagaatgcaagaacagtacatacatactccaaca
gccattgaaagattcacattcatgggaaaacacaagtcttga

>gi568815591r:65860900_66082183|GENSCAN_predicted_peptide_4|596_aa
MNIDAKILNKILANQIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINIIQHINRTKGKNHM
IISIDAEKAFDKIQQPFMLKTLNKLGIDGTYLKIIRAIYDKPTANIILNGQKLEAFPLKT
GTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSA
QNPLKLISNFSKVSGYKINVQKSQAFLYTNNRETESQIMSELPLTIASKIIKYLGIQLTR
DVKDLFKENYKPLLNEIKENTNKWNNIPHSWIGRINIVKMAILPKVIYRFNAIPIKLPMT
FFTELEKTTLKFIWNQKRARIAKSILSQKNKAGGITLPDFKLYYKVAVTKTAWYWYQNRD
TDQWNRTEPSEIIPHIYNYLIFDKPDKNKKWGKDSLFNKWCWENWLAICRKLKLDPFLTP
YTKINSRWIKDLNVRHKTIKTLEENLGNTIQDIGMGKDFMSKTPKAMATKAEIDKRDLIK
LKSFCTAKETTIRLNRQPTQWEKIFAIYSSDKGLISRIYKELKQIYKKKTNNPNNKWMWN
LQIWRANCIYFLKSAYKEIHEVQARVVQGSTVSATQGSAKDPKEQTSKVLTVPIKL

>gi568815591r:65860900_66082183|GENSCAN_predicted_CDS_4|1791_bp
atgaatattgatgcaaaaatcctcaataaaatactggcaaaccaaatccagcagcacatc
aaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggttcaac
atacgcaaatcaataaacataatccagcatataaacagaaccaaaggcaaaaaccacatg
attatctcaatagatgcagaaaaggcttttgacaaaattcaacagcccttcatgctaaaa
actctcaataaattaggtattgatgggacgtatctcaaaataataagagctatttatgac
aaacccacagccaatatcatactgaatgggcaaaaactggaggcattccctttgaaaact
ggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctg
gccagggcaatcaggcaggagaaagaaataaagggtattcaattaggaaaagaggaagtc
aaattgtccctgtttgcagatgacatgattgtatatctagaaaaccccattgtctcagcc
caaaatccccttaagctgataagcaactttagcaaagtctcaggatacaaaatcaatgtg
caaaaatcacaagcattcttatacaccaataacagagaaacagagagccaaatcatgagt
gaactcccactcacaattgcttcaaagataataaaatacctaggaatccaacttacaagg
gatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaagagaat
acaaacaaatggaacaacattccacactcatggataggcagaatcaatatcgtgaaaatg
gccatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatgact
ttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccgc
attgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacgctacctgacttc
aaactatactacaaggttgcagtaaccaaaacagcatggtactggtaccaaaacagagat
acagaccaatggaacagaacagagccctcagaaataataccacacatctacaactatctg
atctttgacaaacctgacaaaaacaagaaatggggaaaggactccctatttaacaaatgg
tgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacacct
tatactaaaattaattcaagatggattaaagacttaaatgttagacataaaaccataaaa
accctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatg
tctaaaacaccaaaagcaatggcaacaaaagccgaaattgacaaaagggatctaattaaa
ctaaagagcttctgcacagcaaaagaaactaccatcagactgaacaggcaacctacacaa
tgggagaaaatttttgcaatctactcatctgacaaagggctaatatccagaatctacaaa
gaactcaaacaaatttacaagaaaaaaacaaacaaccccaacaacaagtggatgtggaac
ctgcagatatggagggccaactgcatttattttttaaaatctgcgtataaggagatccat
gaagttcaagctcgtgttgttcaagggtcaactgtatctgcaactcaaggttctgctaaa
gatcctaaggagcagacttccaaagtgttgactgttcccatcaaactctga

>gi568815591r:65860900_66082183|GENSCAN_predicted_peptide_5|117_aa
MRLRQAPESRKVFIQRDYSSGTGCQFQTMFSMELENQIDRQQFEEIVQTLNNLYAEAEKL
GGQSYLEGCLACLTAYTIFLCLETHYQKLLKKVSKCIQEQNEKIYVPQGLLLTDSIE

>gi568815591r:65860900_66082183|GENSCAN_predicted_CDS_5|354_bp
atgaggctgcggcaggcaccagagtccagaaaggtgttcattcagcgagactacagcagt
ggcacaggctgccagttccagaccatgttctccatggagctggagaaccagattgatagg
cagcagtttgaagaaatagttcaaactctaaataacctttatgcagaagcagagaagctt
ggtggccaatcatatctcgaaggttgtttggcttgtttaacagcatataccatcttccta
tgcttggaaactcattaccagaagcttctgaagaaagtctccaaatgcattcaagagcag
aatgagaagatctatgttccacaaggccttctcctgacagactccattgagtaa

>gi568815591r:65860900_66082183|GENSCAN_predicted_peptide_6|133_aa
MEATPTPPGGLLLARPSPGVGTGPAAADAIPARKALASGGRDTIRAARRRPGGPKLPDDE
EPPNMASESGKLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLT
KAEMDQILHGLDK

>gi568815591r:65860900_66082183|GENSCAN_predicted_CDS_6|399_bp
atggaggcaacgcccaccccgccgggcggcctcctattggcgcggccgtcgccaggggtg
gggacaggaccggcggctgctgacgccatcccggccagaaaagccctggccagtggcggg
cgcgacactatccgtgcggccaggcggagacccggaggaccgaagcttccggacgacgag
gaaccgcccaacatggcctcggagagtgggaagctttggggtggccggtttgtgggtgca
gtggaccccatcatggagaagttcaacgcgtccattgcctacgaccggcacctttgggag
gtggatgttcaaggcagcaaagcctacagcaggggcctggagaaggcagggctcctcacc
aaggccgagatggaccagatactccatggcctagacaag