GENSCAN 1.0	Date run:  8-Nov-116	Time: 01:03:48

Sequence gi568815591r:17926829_18127780 : 200952 bp : 38.08% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 PlyA -    829    824    6                               1.05
 1.01 Sngl -  13913  13497  417  2  0   54   50   343 0.868  21.15
 1.00 Prom -  20115  20076   40                              -5.15

 2.00 Prom +  24523  24562   40                              -7.75
 2.01 Init +  25882  26254  373  0  1   31  105   239 0.824  17.07
 2.02 Intr +  27532  27616   85  2  1   59   95   -22 0.456  -6.44
 2.03 Intr +  27964  28114  151  1  1   72   86    68 0.446   4.24
 2.04 Intr +  31842  31859   18  2  0  134   82     5 0.188   0.39
 2.05 Intr +  35873  36007  135  1  0   29   12   175 0.306   3.84
 2.06 Intr +  36050  36222  173  1  2   22   87   147 0.252   5.82
 2.07 Intr +  36275  36344   70  2  1   21  115    64 0.261   0.67
 2.08 Term +  47257  47631  375  0  0   37   45   170 0.282   1.35
 2.09 PlyA +  49070  49075    6                               1.05

 3.03 PlyA -  49252  49247    6                               1.05
 3.02 Term -  56549  56311  239  0  2   35   43   428 0.525  28.35
 3.01 Init -  74459  74132  328  2  1   63  -19   167 0.032   1.03
 3.00 Prom -  80380  80341   40                              -3.65

 4.02 PlyA -  81355  81350    6                               1.05
 4.01 Sngl -  82863  82429  435  0  0   70   32   211 0.977   9.73
 4.00 Prom -  83813  83774   40                              -5.05

 5.03 PlyA -  83952  83947    6                               1.05
 5.02 Term -  84730  84211  520  0  1    1   42   261 0.763   5.58
 5.01 Init -  85208  85063  146  2  2   88   98   138 0.930  14.44
 5.00 Prom -  85697  85658   40                              -7.15

 6.00 Prom +  91780  91819   40                              -4.35
 6.01 Sngl +  94453  94833  381  0  0   52   38   198 0.197   7.12
 6.02 PlyA +  98447  98452    6                               1.05

 7.03 PlyA -  98617  98612    6                               1.05
 7.02 Term - 100963  99998  966  1  0  -13   42   981 0.954  74.46
 7.01 Init - 103594 103511   84  1  0   47   96    68 0.731   4.37
 7.00 Prom - 112457 112418   40                              -4.45

 8.00 Prom + 116344 116383   40                              -7.15
 8.01 Init + 118535 118610   76  1  1   50   94   104 0.964   8.50
 8.02 Term + 123667 123911  245  2  2   59   45   150 0.485   2.88
 8.03 PlyA + 124778 124783    6                               1.05

 9.03 PlyA - 126646 126641    6                               1.05
 9.02 Term - 155631 155352  280  2  1   90   42   257 0.672  15.23
 9.01 Init - 156939 156932    8  0  2   40  103     0 0.182  -2.82
 9.00 Prom - 158260 158221   40                              -2.45

10.04 PlyA - 158414 158409    6                               1.05
10.03 Term - 161151 160969  183  0  0   73   37   206 0.759  10.56
10.02 Intr - 165815 165617  199  1  1   90   46   100 0.497   4.43
10.01 Init - 177154 177072   83  1  2   52   78   105 0.278   4.57
10.00 Prom - 189677 189638   40                              -4.45

11.02 PlyA - 189818 189813    6                               1.05
11.01 Term - 197465 197358  108  2  0   87   45   116 0.796   4.73

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 160253 160132  122  2  2   32   70   214 0.807  11.72


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591r:17926829_18127780|GENSCAN_predicted_peptide_1|138_aa
MRRPQGRARPFPEGSGAGAPLHSQRSQVGPGARSRGPTSQRQADCRQPTSASPRAGAMET
VTRRQQPLRPPMGTHVAARRGRRSSKMAARPSRATGPRGGQRSRVKPPPGRRLKEQLPPL
AAARAVFAAATAVAMRRG

>gi568815591r:17926829_18127780|GENSCAN_predicted_CDS_1|417_bp
atgcgccggccccaagggcgcgcacgtccattcccggaaggctcgggcgctggggcccct
ctgcactcccagcggtcccaagttggcccaggcgcccggtcccggggtcctacaagtcag
cgccaagccgactgccgacagcctacctccgcttctccgcgcgccggcgctatggagacg
gtcacgagacgccagcagcccctgcgcccgccaatgggaacgcacgttgcagcgagacgc
ggacgtcgctcttccaagatggcggcgcgtccgtcgcgagcgaccgggccgaggggaggc
cagcgaagccgagtaaaaccgccgcccgggagaagactgaaggagcagttgccgccgttg
gcggcggcccgagcagttttcgctgctgctacggctgttgccatgaggcgaggctag

>gi568815591r:17926829_18127780|GENSCAN_predicted_peptide_2|459_aa
MHSKALTLFSSIKAERSKETAEERLEASRGWFRRFKERSYLYNMKVQGEATRADVEAAAS
YPEDLAKIKDESGYIKQYIFKVDKTAFYWKKMSSRIFTAREEKTMPGFRASKDRLTLLLE
ANATGSQKICVTCFIEIFAPLLWSGIEPTISLREQIYQRSTDTVLPPSHCLSLSINCQLV
SFFDILTFVWLKLEIVVRQKLRKVTLKLKDWRFLKFHKYEEKQGLETGASKGLLPVIEVQ
SYDLDWTEAPAAVMFAESPAGKRLLIPVAPGVDSLNSAMAARILFFEGKRQLRVRAEHLS
RDRSYHGEGTEKRLAESETVASQLVTVASMFRRQQPHVKKVGENYSSIARYSHYQGLNMF
PHCLSSKGQTSYGAIQVPTAPGSRLPLQVYLSSISFHNPHRDAVFPPHFQMPKSYMVQMQ
LSLHSPDSSNRNESPPFLEHLSLCMAILMFYNNLNLGVN

>gi568815591r:17926829_18127780|GENSCAN_predicted_CDS_2|1380_bp
atgcatagtaaggccctaactctcttcagttctatcaaggctgagagaagtaaagaaact
gcagaagaaaggcttgaagctagcagaggttggttcaggaggtttaaagaaagaagctat
ctctataacatgaaagtacaaggtgaagcaacaagggctgatgtagaagctgcagcaagt
tatccagaagatctagccaagatcaaagatgaaagtggctatattaaacaatatattttc
aaagtagataaaacggctttctattggaagaagatgtcatctaggatatttacagctaga
gaagagaagacaatgcctggcttcagagcttcaaaggacaggctgactctcttattagag
gctaatgcaactggaagccaaaaaatttgtgtgacttgctttattgagatatttgctcca
ttgctgtggtctggaattgaacccacaatatctctaagagagcaaatttatcagcgcagc
actgacactgttttacccccttcacattgccttagtttatccattaattgccagctcgtt
tccttctttgacattctcacatttgtttggctgaaacttgaaatagttgtcagacagaag
ttgagaaaggtaactcttaaactaaaggattggcgattcctgaagtttcacaagtatgaa
gaaaagcaaggtctagaaactggagccagtaaaggtttgctgcctgttattgaggttcag
agttatgacttggactggacagaggcaccagcagctgtaatgtttgccgagagccctgcg
ggcaagaggctgctgatccctgttgcacctggagtggacagcctcaactcagccatggct
gcacgcatcctgttttttgaagggaaaagacaactgcgggtgagggcggaacacttgagc
agggacaggagttaccacggagaggggacagaaaagaggctggcagagtcggaaactgtg
gcctctcagttggtgactgtggcctccatgttcaggaggcaacagcctcatgtgaaaaaa
gttggagagaactattctagcattgccaggtattctcattatcaaggtctgaatatgttc
ccccattgcctgtcgagcaaaggccaaacttcttatggtgctattcaagtccctacagca
cctggttccaggctgcccttgcaggtctatttgtcatcaatatccttccacaacccacat
agggatgccgtgtttccacctcatttccaaatgcccaaatcctacatggttcaaatgcaa
ctgtctctacacagtcctgattcctccaaccggaatgaatcccctccttttctagagcat
ttgtcactctgtatggctattctcatgttctacaataatttaaatcttggtgttaactag

>gi568815591r:17926829_18127780|GENSCAN_predicted_peptide_3|188_aa
MRHRKGHEKIKVMKKQKAFVKCGISEALQYLWRVFRASLMQKTYLGPVSLRPSGTPNRVV
KTSTMHDGESLSPVLRSAEVKDSKYQEGKLRRQKPRKQTLIKSHEETGRGESSFCFWIPK
RRRRRKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKQLRKLIKRNPRQAKR
AMWRKMLD

>gi568815591r:17926829_18127780|GENSCAN_predicted_CDS_3|567_bp
atgaggcacagaaagggtcatgaaaaaataaaagtaatgaagaagcagaaagcgttcgta
aaatgtggcataagtgaagctctgcaatacttgtggagggtcttcagggcttccctgatg
cagaagacctacctgggcccagtctccttgaggccaagtggaaccccaaacagagttgtc
aagacaagcactatgcatgacggggaaagtctcagtccagttttgaggagtgcagaagtt
aaagactccaaataccaagagggcaagttacgaaggcagaaaccaaggaaacagacgttg
ataaaaagccacgaagagaccgggcgcggtgagtcatcattctgcttttggataccaaaa
agaagaagaagaagaaaagaagaagaagaagaagaagaagaagaagaggaagaggaagag
gaagaggaagaggaggaggaggaggaggaggaggaagaggaagaggaagaggaagaggaa
gaggaagaaaagaagcagctcaggaaactgataaaaagaaaccctagacaagcaaagagg
gctatgtggagaaaaatgttagattag

>gi568815591r:17926829_18127780|GENSCAN_predicted_peptide_4|144_aa
MDKFLDTYTLSSLSQEEVESLNKLITSSEIEAVINSLSTKKRPGPDGFTAEFYQRYKQEL
VPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKGNFRPISLMNVDAKILNKILA
NRIQQHIKKLIHHDQVGFIPGMQG

>gi568815591r:17926829_18127780|GENSCAN_predicted_CDS_4|435_bp
atggataaattcctggacacatacacactctcaagtctaagccaggaagaagttgaatcc
ctgaataaactaataacaagttctgaaatagaggcagtaattaatagcctatcaaccaaa
aaaaggccaggaccagatggattcacagccgaattctaccagaggtacaaacaggagctg
gtaccattcctcctgaaactattccaatcaatagaaaaagagggaatcctccctaactca
ttttatgaggccagcatcatcctcataccaaaacctggcagagacacaacaaaaaaagga
aatttcaggccaatatccctgatgaacgttgatgcaaaaatcctcaataaaatactggca
aaccgaatccagcagcacatcaaaaagcttatccaccatgatcaagttggcttcatacct
gggatgcaaggctag

>gi568815591r:17926829_18127780|GENSCAN_predicted_peptide_5|221_aa
MGKNQHKKPENSKNQNASFPPKDHNSLPAREQNWMENEFDKLPAVGFRSDGENGTKLENT
LQDIIQENFPTLARHANIQIQETQRTPQKYSLRRATQRHIIIRFTKVEIKEKMLRAAKEK
GRVIHKRKPIRLTADLPAETLQARREWRPIFNVLKEKKFQPPRISYPAKLSFISKGEIKS
FTDKQMLRDFVTRPALQELLREALNVERNSQYQPLQKHTKL

>gi568815591r:17926829_18127780|GENSCAN_predicted_CDS_5|666_bp
atggggaaaaaccagcacaaaaagcctgaaaattccaaaaaccagaatgcctcttttcct
ccaaaggatcacaactccttgccagcaagggaacaaaactggatggagaatgagtttgac
aaactgccagcagtaggcttcagaagtgacggggagaatggaaccaagttggaaaacact
cttcaggatattatccaggagaacttccccaccctagcaagacatgccaacattcaaatt
caggaaacacaaagaacaccacaaaaatactccttgagaagagcaacccaaaggcacata
atcatcagattcaccaaggttgaaattaaggaaaaaatgttaagggcagccaaagagaaa
ggtcgggttatccacaaacggaagcccatcagactaacagcagatctgcctgcagaaacg
ctacaagccagaagagaatggaggccaatattcaacgttctcaaagaaaagaagtttcaa
ccacccagaatttcatatccagccaaactaagtttcataagcaaaggagaaataaaatcc
tttacagacaagcaaatgctgagggattttgtcaccagacctgccttacaagagctcctg
agggaagcactaaatgtggaaaggaacagccagtaccaaccactgcaaaaacataccaaa
ttgtaa

>gi568815591r:17926829_18127780|GENSCAN_predicted_peptide_6|126_aa
MFVSPQNSCVEILTPTMMVLGGGNFGGRLGHKGGAPMNGISALIKETPKSSLTPLSYEDS
EKTAVHEPVSGPSPGTESSSTLILHFSSFRTVRRKFLLLISYAVYGSLSQQSGWTKMMLH
LLGPQL

>gi568815591r:17926829_18127780|GENSCAN_predicted_CDS_6|381_bp
atgtttgtgtctccccaaaattcctgtgttgaaatcctaacccctactatgatggtatta
ggaggtggaaactttggtgggcgattaggtcataagggtggagcccccatgaatgggatt
agtgcccttataaaagagacccccaagagttctctaacccctctgtcatatgaagacagt
gaaaagacagctgtccatgaaccagtaagtgggccctcaccaggcacagaatcttctagc
accttgatcttgcacttttcatcctttagaactgtcagacgtaaatttctgttgcttata
agctacgcagtctatggtagtttatcacagcagtctgggtggactaagatgatgctccac
ttgctggggccacagctctag

>gi568815591r:17926829_18127780|GENSCAN_predicted_peptide_7|349_aa
MQPMIKQMSLSTYRDQSKQTLNPLAIDQLAKTPNIKIFSGSSHQDLSQKIADRLGLELGK
VVTKKFSNQETCVEIDESVRGEDVYIVQSGCGEINDSLMELLIMINACKIASASRVTAVI
PCFPYARQDKKDKSRSPISAKLVANMLSIAGADHIITMDLHASQIQGFFDIPVDNLYAEP
TVLKWIRENIPEWKNCIIVSPDAGGAKRVTSIADQLNVDFALIHKERKKANEVDCIVLVG
DVNDRVAILVDDMADTCVTICLAADKLLSAGATRVYAILTHGIFSGPAISRINTACFEAV
VVTNTIPQDEKMKHCSKIRVIDISMILAEAIRRTHNGESVSYLFSHVPL

>gi568815591r:17926829_18127780|GENSCAN_predicted_CDS_7|1050_bp
atgcagccaatgataaaacagatgtccctctcaacctacagagaccaaagtaaacagacg
ctaaatccccttgcaatagaccagttggccaagacgccgaatatcaaaatcttcagcggc
agctcccaccaggacttatcccagaaaattgctgaccgcctgggcctggagctaggcaag
gtggtgactaagaaattcagcaaccaggagacctgcgtggaaattgatgagagtgtgcgt
ggagaggatgtctacatcgttcagagtggttgtggcgaaatcaacgacagtctaatggag
cttttgatcatgattaatgcctgcaagattgcttcagctagccgagttactgcagtcatc
ccatgcttcccttatgcccgacaggataagaaggataagagccggtccccaatctctgcc
aagcttgttgcaaatatgctctctatagcaggtgcggatcatatcatcaccatggaccta
catgcttctcaaattcagggcttttttgatatcccagtagacaacttgtatgcagagcca
actgtcctgaagtggataagggagaatatccctgagtggaagaactgcattattgtctcg
ccagatgctggtggagctaaaagagtgacctccattgcagaccagttgaatgtggacttt
gctttgattcataaagaacggaagaaggccaatgaagtggactgcatagtgctagtggga
gatgtgaatgatcgtgtggctatccttgtagatgacatggcagacacttgtgttacaatc
tgcctcgcagctgacaaacttctctcagctggagcaaccagagtttatgctatcttgact
catggaatcttttctggcccagccatttctcgcatcaacactgcatgctttgaagcagtg
gtagtcaccaataccatacctcaagatgagaagatgaagcattgctccaaaatacgagta
attgacatctccatgatccttgcagaagccataaggagaactcataatggggaatctgtt
tcctacctgttcagccatgttcctttataa

>gi568815591r:17926829_18127780|GENSCAN_predicted_peptide_8|106_aa
MQLAEGEIKQALTDSVTVTFKLQETAKAEAQDLAGGQWSGYIGLMVGDAKRGPHGADMEK
PDTAYPSGNGLKASWKGQLRELLESLAGLSTYPQIKPISKAPWQYA

>gi568815591r:17926829_18127780|GENSCAN_predicted_CDS_8|321_bp
atgcaacttgcagaaggagaaatcaagcaggctctcacagactcagtcacagtgacgttt
aagttacaggaaacagctaaagccgaagctcaggacctagcaggtgggcaatggtcaggg
tacattggattaatggtgggtgacgcaaagagagggccacatggagcagatatggagaaa
ccagacacagcttatccttcaggaaatgggctgaaggcctcctggaaagggcagttgcga
gagttgttggagtcactggctggtctctcaacctatccccaaataaaacctatctccaaa
gctccctggcagtatgcctga

>gi568815591r:17926829_18127780|GENSCAN_predicted_peptide_9|95_aa
MCILKLKAHSSNRSVPIDPGLGQDPMDTGCRNTLMNTGSRATPVDSINMSTPVDADRRYN
PIDLGTGAASLGNPAVTLPVNHTRKHARISRQTDW

>gi568815591r:17926829_18127780|GENSCAN_predicted_CDS_9|288_bp
atgtgcatattgaagctcaaagcacacagcagtaacaggtcagtccctatagacccagga
ttggggcaggatcccatggacacaggctgtaggaacaccctcatgaacacaggctccagg
gccacccccgtggactcaatcaacatgtccaccccagtggatgcagaccgcaggtacaac
cccatagacctgggcactggggcagcctccctgggaaatccagcagtaactctacctgtg
aaccacaccagaaagcatgccagaatctctagacagactgactggtaa

>gi568815591r:17926829_18127780|GENSCAN_predicted_peptide_10|154_aa
MASCPGLVPNWCPELLGSALATQDHELVSGHLSFFLAMDNGTPLLYVENPLFYDIEPTFN
CRSYMPAATAAVPHRTNSAEGFGALFLLEWLQSQATSPDNRASDLERAQSRSVTSQTHRP
DTSTSHCGQGDNGFKAKQTQPARRSGNAPVLRSL

>gi568815591r:17926829_18127780|GENSCAN_predicted_CDS_10|465_bp
atggcatcctgtccggggctggttcccaactggtgccctgaactgctgggatcggctctg
gccacccaagaccatgaattggtcagtggacacctgtcattctttttggcaatggacaat
gggaccccattattatatgtggagaatcctctcttttatgatatagagcccacattcaac
tgtagaagctatatgccagcagcgacagcagcagtacctcacaggacaaattctgcagag
ggatttggagccttgtttctacttgagtggcttcaaagtcaggccacctctcctgacaac
cgcgcctcggatctggagagagctcagtcccgctctgtcacatcacagacacacaggcct
gacaccagcacctctcattgcggacaaggggataacggcttcaaagccaaacaaacgcag
cctgctaggcgctcagggaacgcccccgtcctccgttccctctag

>gi568815591r:17926829_18127780|GENSCAN_predicted_peptide_11|35_aa
AIAVWKQTVKDIDNIHPTDIPPSYLSTDLQMSSAK

>gi568815591r:17926829_18127780|GENSCAN_predicted_CDS_11|108_bp
gctattgctgtatggaagcagaccgtaaaagacatagataacattcacccaacagatatt
ccaccttcttatttgtctacagatctccaaatgagctcggcaaagtga