GENSCAN 1.0	Date run:  4-Nov-116	Time: 13:53:33

Sequence gi568815591r:151367122_151619511 : 252390 bp : 47.16% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    740    847  108  1  0   53  116    63 0.907   6.08
 1.02 Intr +   1614   1766  153  2  0  101   65    67 0.868   5.97
 1.03 Intr +   6976   7122  147  0  0   59   64   187 0.916  13.83
 1.04 Intr +   8727   8822   96  2  0   61   72    74 0.803   3.31
 1.05 Intr +   9513   9690  178  2  1   94   96   203 0.999  21.19
 1.06 Term +   9926  10104  179  0  2   84   36   200 0.956  12.25
 1.07 PlyA +  11301  11306    6                               1.05

 2.19 PlyA -  11353  11348    6                              -1.75
 2.18 Term -  13046  12557  490  1  1   61   43   196 0.612   6.53
 2.17 Intr -  13454  13156  299  2  2   37   91   240 0.607  14.87
 2.16 Intr -  14625  14497  129  0  0  108   86   207 0.999  23.39
 2.15 Intr -  14860  14757  104  2  2   51   96   206 0.998  17.59
 2.14 Intr -  18102  17967  136  0  1  132   95   234 0.136  28.64
 2.13 Intr -  24985  24845  141  1  0   47   88    75 0.501   3.95
 2.12 Intr -  29075  28655  421  1  1  147   78   601 0.891  58.95
 2.11 Intr -  33120  32979  142  1  1  112   76   222 0.992  22.81
 2.10 Intr -  34469  34373   97  2  1   78   94    37 0.404   2.88
 2.09 Intr -  36089  35974  116  0  2   66   23    85 0.209  -0.03
 2.08 Intr -  41932  41836   97  1  1  107   50    69 0.906   4.58
 2.07 Intr -  42266  42124  143  0  2  104   72    17 0.970   1.77
 2.06 Intr -  42592  42306  287  0  2  105   69   248 0.555  21.59
 2.05 Intr -  44887  44655  233  1  2   43   82    59 0.053  -2.63
 2.04 Intr -  65164  65047  118  0  1  112   30   219 0.242  18.97
 2.03 Intr -  69204  69059  146  0  2   -6   75   218 0.974  10.18
 2.02 Intr -  71123  70875  249  2  0  114  101   401 0.992  41.63
 2.01 Init -  72796  72776   21  1  0  114  113     7 0.938   5.57
 2.00 Prom -  88586  88547   40                              -2.96

 3.04 PlyA -  88596  88591    6                               1.05
 3.03 Term -  92734  92609  126  1  0   48   39   134 0.512   2.78
 3.02 Intr -  93097  92955  143  2  2   76   37    78 0.511   1.57
 3.01 Init -  93847  93664  184  1  1   52    8   203 0.634   6.44
 3.00 Prom -  95622  95583   40                              -1.86

 4.08 PlyA -  98914  98909    6                               1.05
 4.07 Term - 100090  99998   93  1  0  127   37    90 0.791   5.63
 4.06 Intr - 103531 103450   82  0  1   71   92    68 0.706   5.14
 4.05 Intr - 104484 104428   57  2  0   81   98    22 0.426   0.50
 4.04 Intr - 110294 110212   83  2  2  110  116    22 0.651   5.64
 4.03 Intr - 117683 117616   68  0  2  110  108    30 0.899   5.82
 4.02 Intr - 123893 123822   72  0  0   85   98    79 0.159   7.98
 4.01 Init - 152390 152339   52  2  1  104   92    79 0.453  11.44
 4.00 Prom - 164074 164035   40                              -3.86

 5.00 Prom + 166907 166946   40                              -4.26
 5.01 Init + 172264 172466  203  0  2  107   86    95 0.943   9.55
 5.02 Intr + 175680 175784  105  0  0   57   37   113 0.619   2.43
 5.03 Term + 186354 186465  112  0  1  103   54    77 0.353   3.83
 5.04 PlyA + 188773 188778    6                               1.05

 6.14 PlyA - 188910 188905    6                               1.05
 6.13 Term - 189790 189606  185  2  2   56   33   101 0.633  -0.89
 6.12 Intr - 192702 192601  102  1  0  107   78     8 0.696   1.85
 6.11 Intr - 193496 193403   94  2  1  159   98   116 0.971  19.24
 6.10 Intr - 197103 196957  147  0  0   91   78   135 0.719  13.23
 6.09 Intr - 198262 198225   38  2  2   99   87    16 0.994   0.58
 6.08 Intr - 198764 198599  166  2  1   57   72   211 0.984  15.93
 6.07 Intr - 201721 201595  127  0  1   84   78    88 0.978   8.08
 6.06 Intr - 203104 203050   55  2  1   62   92    37 0.646  -0.46
 6.05 Intr - 209331 209250   82  0  1  112   87    41 0.484   5.61
 6.04 Intr - 228333 228224  110  1  2  107  108    55 0.216   9.40
 6.03 Intr - 237746 237625  122  1  2   16   41   120 0.001   0.24
 6.02 Intr - 242611 242556   56  1  2   68   81    51 0.049   0.18
 6.01 Intr - 245698 245565  134  2  2   97  105    31 0.693   6.06

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  18166  17967  200  0  2   90   95   287 0.863  28.59
S.002 Term + 136045 136342  298  1  1   35   42   237 0.851   8.54
S.003 Term - 161869 161760  110  2  2   77   48    98 0.944   3.37


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591r:151367122_151619511|GENSCAN_predicted_peptide_1|286_aa
GNCGKEKVLFLRLYLLQGIRNYHSGNDVEAYEYLNKARQLFKELYIDPSKVDNLLQLGFT
AQEARLGLRACDGNVDHAATHITNRREELAQIRKEEKEKKRRRLENIRFLKGMGYSTHAA
QQVLHAASGNLDEALKILLSNPQMWWLNDSNPETDNRQESPSQENIDRLVYMGFDALVAE
AALRVFRGNVQLAAQTLAHNGGSLPPELPLSPEDSLSPPATSPSDSAGTSSASTDEDMET
EAVNEILEDIPEHEEDYLDSTLEDEEIIIAEYLSYVENRKSATKKN

>gi568815591r:151367122_151619511|GENSCAN_predicted_CDS_1|861_bp
ggaaattgtgggaaagagaaggtactgtttctaagactctacttacttcaagggatccga
aactatcacagtggaaatgatgtagaggcttatgagtatcttaacaaggcacgtcagctc
tttaaagagctatatattgatccatcaaaagtggacaatttgttgcagttggggtttact
gcccaggaagcccggcttggcctgagggcgtgtgatgggaacgtggatcatgcggccact
catattaccaaccgcagagaggaactggcccaaataaggaaggaggaaaaagagaagaaa
agacgccgcctcgagaacatcaggtttctgaaagggatgggctactccacgcacgcggcc
cagcaggtactccacgcagccagcgggaacttggatgaggccctgaagattctgctcagc
aatcctcagatgtggtggttaaatgattccaatcctgaaaccgacaaccgtcaagaaagt
ccttcccaggaaaacattgaccgattggtgtacatgggttttgatgcactcgtggccgaa
gctgcgctgagagtgttcagaggcaacgtccagctggccgcccagacccttgctcacaac
ggaggaagcctgcctcccgagctgccgctgtcgccagaagactctttgtccccgccagcc
acgtccccttctgactccgcaggaacctctagtgcctcaacagacgaagacatggagaca
gaggccgtcaatgagatactggaagacattccagagcatgaggaagactatcttgactca
actctggaagatgaagaaattattattgcagagtacctatcctatgtagaaaataggaag
tcagcaacaaagaaaaactaa

>gi568815591r:151367122_151619511|GENSCAN_predicted_peptide_2|1122_aa
MAQRSGKITLYEGKHFTGQKLEVFGDCDNFQDRGFMNRVNSIHVESGAWVCFNHPDFRGQ
QFILEHGDYPDFFRWNSHSDHMGSCRPVGMHGEHFRLEIFEGCNFTGQCLEFLEDSPFLQ
SRGWVKNCVNTIKVYGDGAWVLYEEPNYHGRMYVVESGDFRSFSDWEAHSARVQSLHKIW
GQFPRGESVIYDLQEKREDRLAEDICTHSSTVQTQPPEMAGSSPPGGHFVPNRRRRGGGG
GEAKNKKSINLERGSRSRAPRSPRWPRAAVVRSRRADPGAPLPSGAQLLLVPRPASGMGG
GGSALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQAHRPQTADP
SSCARRPLSRSPAPAHPGTLAEERLSGPSIWLLSARQGRVPCGLFVANCALLLAFPVDDS
HSNSRRLLRASDEKHPGKKIPQGSKKQNLASLLTKSYTESTQVKRCVAIACKENSEHVPF
PLRLPLSSVCATSREAGIVPIPGHESYVTFCQLEDEAAFTCSADCTIRRWDVLTGQCLQV
YRGHTSIVNRILVANNQLFSSSYDRTARVWSVDKGQMSREFRGHRNCVLTLAYSAPWDLP
STPCAEEAAAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGS
TDATIRAWDILSGEQLRVFREHRGSVICLELGSTLPCPERLKGLAEGRQHTLLQKEQLAL
KAAKRLMVWGSAQVVTKLVNRLVYSGSADRTVKCWLADTGECVRTFTAHRRNVSALKYHA
GTLFTGSGDACARAFDAQSGELRRVFRGHTFIINCIQVHGQVLYTASHDGALRLWDVRGL
RGAPRPPPPMRSLSRLFSNKSLDGATFCIHVPRLARVPGEKLQVTVSAVESSSSRCREKH
LLQEQPLQVEQPLQVEQPFQVEQHALHSLNAEDTSSETAGAARDHLLGDGRVRPRARMNR
KMGLLGGKQIGAGEPAETAPCTVLRVRLKHTQTSGVARSCCVPEPLGPVAATRGIPTRED
LSIVLKGRFRWRRPENRLECCLRAVLPAGPEPAQTFTLTPACRRHCCLVMLRSGLSSPSL
TRQLQSPPYLPTAENGACIKPSRETQWGMDPKHGRCTHFAFL

>gi568815591r:151367122_151619511|GENSCAN_predicted_CDS_2|3369_bp
atggcgcagcgctcggggaagatcactctctatgaaggcaagcacttcacagggcagaag
ctggaggtcttcggggactgtgacaacttccaggaccggggctttatgaaccgagtgaac
tccatccacgtggagagcggagcctgggtctgcttcaatcaccccgacttccggggccag
cagttcatcttggagcacggcgactaccccgacttcttccgctggaacagccacagtgac
cacatgggctcctgtcggcctgtaggaatgcacggagaacatttccgcctagaaatcttc
gagggttgcaacttcacgggccagtgcctggagttcctggaggacagccccttcctccag
agcaggggctgggtcaagaactgtgtgaacaccatcaaggtgtacggggacggagcgtgg
gtcctgtatgaggagcccaactaccacggccgcatgtacgtggtggagagtggcgacttc
cgcagcttctcggactgggaggcccacagcgcacgagtgcagtcgctccacaagatctgg
gggcaatttcccagaggagagtctgtaatctacgacctgcaagagaaaagggaagacagg
ctggctgaggacatctgcacccacagctctacagtccagactcaacccccagagatggct
ggctcatccccaccagggggccactttgtgccaaaccggagaaggaggggtgggggaggt
ggagaagccaagaacaaaaaatctatcaacctggaaagaggaagtaggagtcgggctccc
cgttccccgcgatggccgcgggccgcagtcgtacggagccgccgcgcggaccccggggcg
cccctccctagcggggcgcagctccttcttgttccccgccctgccagcgggatggggggc
ggcgggtcggccctgagggtctgcgccgaccaccgcgggggcatcaactggctgagcctg
agccccgacgggcagcgcctgctgacgggcagcgaggacggcacggcccggctctggagc
accgcggacggccagtgctgcgcgctcctgcaagctcaccggccccagaccgcggacccc
agctcctgcgcccgcagacccctttctagaagtccagcccccgctcatcccggcacacta
gcggaagagcgcttgtctgggcccagcatctggctgttgagcgcacggcagggcagggtg
ccttgtggcctctttgtggccaattgtgctcttctgctggcatttcctgttgacgactct
cacagcaacagtagacgcttgttaagggccagcgatgaaaaacatccaggaaaaaaaatt
ccacaaggctccaaaaagcaaaatttggcttccctgctcaccaagtcctacactgaatcc
acacaagtgaagcgatgtgtagccatcgcatgtaaggaaaatagcgaacatgtgccattc
cctctgcggctgcctctgtcctcagtctgcgctacatcccgtgaggcaggcattgtcccc
atcccaggacatgaaagctatgtgaccttctgccagctggaggatgaggctgccttcaca
tgcagcgccgactgcaccatcaggaggtgggacgtgctgaccgggcagtgtctgcaggtg
taccgaggacacacgtccatcgtgaacaggatcctggttgccaacaaccagctcttcagc
agctcctatgaccggacagctcgggtctggagtgtggacaaggggcagatgtcccgggag
ttccggggccaccgcaactgcgtgctgaccctagcctactctgccccgtgggacctcccc
agcactccctgcgcggaggaggccgcggccggggggcttctggtgaccggcagcacagat
ggcacagccaaggtgtggcaggtggccagcggctgctgccaccagacgctgcggggccac
acgggtgcagtgctgtgcctagtgctagacacgcccggccacacggccttcacaggcagc
accgacgccaccatccgtgcctgggacatcctgagtggggagcagctgcgggtgttccgg
gagcaccggggctccgtcatctgtctggagctgggcagcaccttgccctgccctgagcgt
ctgaaggggctggcagaaggaaggcagcacacacttttgcagaaagagcagctggcactg
aaggcagccaaacgtctgatggtttggggctctgctcaggtagtcactaagctggtgaac
cgactcgtgtactctggcagcgcggacaggaccgtcaagtgctggctggcagacacaggg
gagtgtgtgcgcacgttcacggcccacagacgcaacgtgagcgccctcaagtaccacgcg
ggcaccttgttcacgggcagcggggacgcttgcgcccgggccttcgacgcgcagtctgga
gagctgcggagggtgttccggggccacacattcatcatcaactgcatccaggtgcacggc
caggtgctctacaccgcctcgcacgacggcgccctgcgcctctgggacgtgcgcgggctc
cgaggtgccccgcggccccctccgcccatgcgcagcctctcgcggctcttcagcaacaag
tcccttgatggtgccactttctgcatccatgtgccccggttggcccgggtgccaggagag
aagctgcaggtgacagtgtctgccgtggagagctcatcatctcgctgcagagagaagcac
ctgctgcaggagcagccccttcaagtggagcagccccttcaagtggagcagccctttcag
gtagagcagcatgcgcttcatagtcttaatgcagaagatacttcatcagagacggccggg
gccgccagggatcacctgctaggtgatgggcgggtccgccctcgggcgcggatgaacagg
aaaatgggcctgttgggaggcaagcagatcggtgcaggagaacccgcagaaacggcacca
tgcactgttctccgggtgagacttaagcacacacagacctcgggggtggccaggtcttgc
tgcgtcccggagccattggggcctgtggctgccacaaggggcatacctaccagagaggac
ctttccatcgtgctgaagggacggttccggtggcgcaggccagagaaccgccttgagtgc
tgcctgcgggcagtgctgccggccggccctgagcctgcacagacgttcacactgactcct
gcttgccgaagacactgctgcttggtgatgctgcgctctggcctgagcagcccctcactg
acacgtcagctccagtccccaccttatctccccacagcagagaatggagcatgcatcaag
ccatccagagaaacccagtggggcatggacccaaaacacgggcgctgcactcactttgca
tttttatag

>gi568815591r:151367122_151619511|GENSCAN_predicted_peptide_3|150_aa
MIVYLQQQSVLWVAPESCSAAILFLGYTSKAIRNTTTYPSKRVYQIREKIFHSSLAQGIK
NNQQGIQVHQHRTLWLPYGARLTRVICAELYPKRLKQEDSRELQLEQRKSLIAEAPSGAG
HLHVFQVPGTLLLLLLRAQGLHFEKHWLGQ

>gi568815591r:151367122_151619511|GENSCAN_predicted_CDS_3|453_bp
atgattgtgtatctccagcagcagtcggtgctgtgggtggctccggaatcctgcagtgct
gccatcttattcctgggctacacatccaaagcaatacggaacaccacgacttaccccagc
aaacgagtttaccaaatccgagaaaaaatatttcattccagtctggcccaaggcatcaag
aacaatcagcaaggaattcaagtacatcagcacaggactctgtggctgccttacggggcg
cggttgacgagggtgatatgtgctgaactttaccctaaaaggctcaagcaggaggacagc
agggagttacaactggagcagcggaagtccctgattgcagaggccccgtcaggtgcagga
catctgcatgtcttccaagttccagggacgctgctgctgctgctgctgcgagctcagggg
ctgcattttgagaagcactggcttggacaataa

>gi568815591r:151367122_151619511|GENSCAN_predicted_peptide_4|168_aa
MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD
TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQVISYEEGKA
LAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGAASQGKSSCSVM

>gi568815591r:151367122_151619511|GENSCAN_predicted_CDS_4|507_bp
atgccgcagtccaagtcccggaagatcgcgatcctgggctaccggtctgtggggaaatcc
tcattgacgattcaatttgttgaaggccaatttgtggactcctacgatccaaccatagaa
aacacttttacaaagttgatcacagtaaatggacaagaatatcatcttcaacttgtagac
acagccgggcaagatgaatattctatctttcctcagacatactccatagatattaatggc
tatattcttgtgtattctgttacatcaatcaaaagttttgaagtgattaaagttatccat
ggcaaattgttggatatggtggggaaagtacaggtgatcagttatgaagaagggaaagct
ttggcagaatcttggaatgcagcttttttggaatcttctgctaaagaaaatcagactgct
gtggatgtttttcgaaggataattttggaggcagaaaaaatggacggggcagcttcacaa
ggcaagtcttcatgctcggtgatgtga

>gi568815591r:151367122_151619511|GENSCAN_predicted_peptide_5|139_aa
MDAGITEEWSDGERPPPTAVLGVMAERAGEQGCIPNRVPVLSTFVCRRLAVQLPDRSLFL
FSTTLSLRARVQEMYSEEAQMDSSLLWDQDTLKEFKVFKEEHSSGKSATSAGPGSGHFFP
IGPKGTGEDGDSRKGRKLI

>gi568815591r:151367122_151619511|GENSCAN_predicted_CDS_5|420_bp
atggatgcggggatcacggaggagtggagtgatggggagcgaccaccgcccactgctgtt
cttggggtgatggcagaaagagcaggagagcagggctgtatccccaacagggttcctgtt
ctaagcacgtttgtgtgcaggaggctggctgtgcagctgcctgaccgttctctgtttctt
ttcagtacaaccctgtcactaagggctagagtccaggagatgtactcagaagaggcacag
atggattctagtctcctgtgggatcaggacacattgaaagaattcaaggtcttcaaagag
gaacacagctcaggcaagtcggccacaagtgcagggcccggctccggccacttcttcccc
attggcccaaagggcacaggtgaggacggggacagcaggaaaggaaggaagctgatctga

>gi568815591r:151367122_151619511|GENSCAN_predicted_peptide_6|472_aa
XLGLVTASGYCTISWGSPCTCAFGNGPIDGHSLSIILEMGLCTMKTKQEFQDWTKRSVEL
EGGNASSELQSFQGHHNKEGLRNCRSQEEPEEMLPTIMWNPGRDPVEDSESGVYMRFMRS
HKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVELYLQETFKPLV
NISPDASLFDAVYSLIKNKIHRLPVIDPISGNALYILTHKRILKFLQLFMSDMPKPAFMK
QNLDELGIGTYHNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLA
AEKTYNNLDITVTQALQHRSQYFEGVVKCNKLEILETIVDRIVRAEVHRLVVVNEADSIV
GIISLSDILQALILTPAAPVKYEQPSLCQGHMDPMWEQTACPLNSQNPILNEFTGMEQVM
WHKVSARYVQITVPYVRIQQYVTAAAGAHACETTPSLNVEVFEPFTKSVCFL

>gi568815591r:151367122_151619511|GENSCAN_predicted_CDS_6|1419_bp
ngtctagggctggtaacagcttcaggttattgcactatttcttggggttccccatgcacc
tgtgcctttgggaatggtcccatagacggtcactcgctgagcatcatcttagaaatgggg
ctgtgcactatgaagactaaacaagagttccaggactggaccaaaagaagtgtggaactt
gagggtgggaatgcctcatcagaacttcaaagcttccaaggccatcacaacaaggagggt
ctgagaaactgtcgcagccaggaggagcccgaggagatgctcccgaccatcatgtggaat
cctggacgggatccagtagaagactcagaaagtggtgtttacatgcgattcatgaggtca
cacaagtgttatgacatcgttccaaccagttcaaagcttgttgtctttgatactacatta
caagttaaaaaggccttctttgctttggtagccaacggtgtccgagcagcgccactgtgg
gagagtaaaaaacaaagttttgtagagctttatttacaagaaacatttaagcctttagtg
aatatatctccagatgcaagcctcttcgatgctgtatactccttgatcaaaaataaaatc
cacagattgcccgttattgaccctatcagtgggaatgcactttatatacttacccacaaa
agaatcctcaagttcctccagctttttatgtctgatatgccaaagcctgccttcatgaag
cagaacctggatgagcttggaataggaacgtaccacaacattgccttcatacatccagac
actcccatcatcaaagccttgaacatatttgtggaaagacgaatatcagctctgcctgtt
gtggatgagtcaggaaaagttgtagatatttattccaaatttgatgtaattaatcttgct
gctgagaaaacatacaataacctagatatcacggtgacccaggcccttcagcaccgttca
cagtattttgaaggtgttgtgaagtgcaataagctggaaatactggagaccatcgtggac
agaatagtaagagctgaggtccatcggctggtggtggtaaatgaagcagatagtattgtg
ggtattatttccctgtcggacattctgcaagccctgatcctcacaccagcagccccagtc
aaatatgaacaacccagcctttgtcagggccacatggacccgatgtgggagcaaacagca
tgccctttgaactctcagaatccaatattaaacgaattcactggtatggaacaggtgatg
tggcataaggtgagtgcacggtatgttcagatcacagtgccttatgtccgaatacagcaa
tatgtcaccgccgcagccggggcgcacgcgtgtgaaacaacaccgagcttgaatgtggaa
gtctttgaaccttttaccaaatcagtttgttttctttag