GENSCAN 1.0 Date run: 8-Nov-116 Time: 12:43:37 Sequence gi568815591f:75782074_75988346 : 206273 bp : 49.96% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Intr + 1212 1346 135 1 0 101 80 30 0.501 4.04 1.02 Intr + 5105 5250 146 0 2 70 93 46 0.291 3.30 1.03 Intr + 11501 11626 126 1 0 50 113 11 0.058 0.68 1.04 Term + 19217 19360 144 1 0 42 42 85 0.144 -2.79 1.05 PlyA + 19410 19415 6 1.05 2.04 PlyA - 21702 21697 6 1.05 2.03 Term - 29891 29723 169 1 1 135 36 194 0.999 16.25 2.02 Intr - 31350 31233 118 1 1 114 45 50 0.995 2.82 2.01 Init - 31642 31570 73 1 1 78 94 49 0.927 4.89 2.00 Prom - 31720 31681 40 -5.76 3.03 PlyA - 32123 32118 6 1.05 3.02 Term - 38123 37935 189 2 0 -17 42 616 0.991 43.95 3.01 Init - 41385 41314 72 0 0 90 105 5 0.395 1.48 3.00 Prom - 42136 42097 40 -6.56 4.00 Prom + 44884 44923 40 -4.66 4.01 Init + 47754 47858 105 2 0 70 16 67 0.212 -2.06 4.02 Term + 53639 53860 222 1 0 38 42 373 0.942 24.62 4.03 PlyA + 54835 54840 6 1.05 5.03 PlyA - 55651 55646 6 1.05 5.02 Term - 56691 56567 125 1 2 32 44 136 0.436 2.15 5.01 Init - 59553 59535 19 0 1 72 96 7 0.380 0.40 5.00 Prom - 61518 61479 40 -3.36 6.00 Prom + 73545 73584 40 -2.66 6.01 Init + 96875 97187 313 1 1 63 105 346 0.947 29.29 6.02 Intr + 99756 100094 339 1 0 53 -14 436 0.681 25.35 6.03 Intr + 101601 101775 175 1 1 78 100 163 0.766 15.50 6.04 Intr + 105573 105654 82 0 1 83 41 56 0.503 0.04 6.05 Intr + 106433 106687 255 1 0 65 58 103 0.372 2.64 6.06 Intr + 108813 108928 116 2 2 82 96 28 0.479 2.25 6.07 Term + 114342 114546 205 0 1 60 48 100 0.328 0.04 6.08 PlyA + 115811 115816 6 1.05 7.00 Prom + 120647 120686 40 -3.36 7.01 Init + 125475 125558 84 2 0 41 94 66 0.970 3.32 7.02 Term + 127466 127852 387 1 0 3 42 329 0.967 14.74 7.03 PlyA + 128388 128393 6 1.05 8.00 Prom + 131346 131385 40 -7.06 8.01 Init + 133000 133106 107 0 2 75 101 72 0.868 5.02 8.02 Intr + 138519 138632 114 0 0 91 94 70 0.955 7.46 8.03 Term + 146732 146858 127 2 1 87 43 109 0.913 4.06 8.04 PlyA + 148411 148416 6 1.05 9.04 PlyA - 148762 148757 6 1.05 9.03 Term - 152753 152637 117 2 0 117 55 45 0.985 2.64 9.02 Intr - 152999 152854 146 0 2 83 99 38 0.618 4.40 9.01 Init - 156831 156765 67 0 1 56 45 76 0.371 1.33 9.00 Prom - 157168 157129 40 -5.06 10.00 Prom + 162912 162951 40 -6.26 10.01 Init + 164541 164557 17 2 2 72 87 21 0.334 0.09 10.02 Intr + 171916 172107 192 1 0 105 87 299 0.909 30.11 10.03 Intr + 190340 190388 49 2 1 122 113 44 0.969 8.98 10.04 Intr + 195832 195952 121 0 1 66 38 149 0.768 7.77 10.05 Intr + 197207 197310 104 0 2 103 31 -2 0.770 -4.51 10.06 Intr + 197378 197506 129 1 0 112 107 320 0.988 37.19 10.07 Intr + 198266 198415 150 1 0 80 101 296 0.987 30.46 10.08 Intr + 198975 199099 125 2 2 82 81 315 0.999 29.58 10.09 Intr + 199444 199533 90 1 0 83 99 102 0.999 9.91 10.10 Intr + 200151 200249 99 0 0 108 78 286 0.999 28.83 10.11 Intr + 201447 201563 117 0 0 99 81 223 0.999 22.28 10.12 Intr + 201665 201783 119 2 2 88 101 264 0.969 27.81 10.13 Intr + 202704 202885 182 1 2 113 91 488 0.999 51.19 10.14 Intr + 202985 203134 150 1 0 85 100 282 0.998 29.46 10.15 Intr + 203506 203776 271 0 1 63 96 491 0.659 44.51 10.16 Intr + 203850 203995 146 1 2 71 100 322 0.975 31.70 10.17 Intr + 204086 204168 83 1 2 71 92 142 0.810 11.34 10.18 Term + 204264 204408 145 0 1 94 50 362 0.999 30.38 10.19 PlyA + 204762 204767 6 1.05 11.07 PlyA - 204933 204928 6 1.05 11.06 Term - 205212 205099 114 0 0 113 54 50 0.999 2.67 11.05 Intr - 205355 205287 69 2 0 59 99 84 0.937 5.98 11.04 Intr - 205529 205465 65 0 2 126 113 17 0.999 6.44 11.03 Intr - 205737 205645 93 1 0 85 92 187 0.999 18.74 11.02 Intr - 205911 205850 62 2 2 80 70 48 0.947 0.58 11.01 Init - 206095 206010 86 1 2 78 89 41 0.739 3.50 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Term + 172335 172425 91 0 1 69 43 87 0.846 -0.51 S.002 Init + 186009 186055 47 2 2 96 86 25 0.874 3.27 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815591f:75782074_75988346|GENSCAN_predicted_peptide_1|183_aa XEQERVFSLAQSHTDNRRLHEPDLQEVIRAVPLGDPKWNYQADSPDVIPRFGLPTSIQSD NGLAFISQITQAVSQALGIQWKLRTPYHPQSSGKCWDYRHKSLHPAKCLLNSYSPSNVQG SGDTVVDRTPSLSLRKSSLWYKAPQSRDGDTIGDGKTSGAHQLGQPNKKRHGYHIISFPD FLS >gi568815591f:75782074_75988346|GENSCAN_predicted_CDS_1|552_bp natgaacaggaaagagttttttctctagcccaatctcacactgataaccgccggcttcac gagccagacctccaggaagttattagagcagttcccctaggagatccaaaatggaactat caggctgattccccagacgtaattcctcggtttggccttcccacctctatacagtccgat aatggactggcctttattagtcaaatcacccaagcagtttctcaggctcttggtattcag tggaaacttcgtaccccttaccatcctcaatcttcaggaaagtgctgggattacaggcat aagtcactgcatccagccaaatgtttgctgaattcttacagccccagcaatgtccaaggc tctggagacaccgtggtggacaggacaccatccctgtccttaagaaagagtagcctttgg tataaggcaccccagtccagagatggagatactattggcgatgggaaaacatcaggagca caccaactggggcagcccaataaaaagaggcatggatatcacatcatcagcttccctgac tttttatcataa >gi568815591f:75782074_75988346|GENSCAN_predicted_peptide_2|119_aa MAGLMTIVTSLLFLGVCAHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRSTCLK AGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQTTC >gi568815591f:75782074_75988346|GENSCAN_predicted_CDS_2|360_bp atggcaggcctgatgaccatagtaaccagccttctgttccttggtgtctgtgcccaccac atcatccctacgggctctgtggtcatcccctctccctgctgcatgttctttgtttccaag agaattcctgagaaccgagtggtcagctaccagctgtccagcaggagcacatgcctcaag gcaggagtgatcttcaccaccaagaagggccagcagttctgtggcgaccccaagcaggag tgggtccagaggtacatgaagaacctggacgccaagcagaagaaggcttcccctagggcc agggcagtggctgtcaagggccctgtccagagatatcctggcaaccaaaccacctgctaa >gi568815591f:75782074_75988346|GENSCAN_predicted_peptide_3|86_aa MQGRRPSLPRCPSSRPILPAIPDLKEKEKEKEKEKEKEKEEEEEEEKKKKKKKKEEEEEE EEEEEEEEEEEEEEEEEEEEEEEVVY >gi568815591f:75782074_75988346|GENSCAN_predicted_CDS_3|261_bp atgcaggggaggcgcccttccctccccaggtgcccctcctctcgtcccattcttcctgcc atcccagatctgaaggagaaggagaaggagaaggagaaggagaaggagaaggagaaggag gaggaggaggaggaggagaagaagaagaagaagaagaagaaggaagaagaagaagaagag gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa gaagaagaagtagtttactaa >gi568815591f:75782074_75988346|GENSCAN_predicted_peptide_4|108_aa MNSEMTAMPQPPNPPGNQLLFISSGHKGSLWTSWIVLKYQTLIFGNSAEFGTLKKAAVHY DGSGRSLGSADMRFERKAHALKAMKQYYGTPLAGRPVNIQLVTSQIDT >gi568815591f:75782074_75988346|GENSCAN_predicted_CDS_4|327_bp atgaacagtgaaatgacggcgatgccccagccacccaacccccctgggaatcagcttctg ttcatcagctcaggccacaaaggaagtctttggacaagctggatagttttgaagtatcag acactgatatttgggaactctgcagaatttggaacgctgaagaaggcggctgtgcactac gatggctctggccgcagcttaggatcagcagacatgcgctttgagcggaaggcacacgcc ctgaaggccatgaagcagtactacggcacccctctggctggccgccctgtgaacattcag cttgtcacatcacagattgatacataa >gi568815591f:75782074_75988346|GENSCAN_predicted_peptide_5|47_aa MTLHKAEELLFHGTGPFYIATNNVEYLQIGPLSDIHGKSIHRYTRLQ >gi568815591f:75782074_75988346|GENSCAN_predicted_CDS_5|144_bp atgaccctccacaaagcagaggaactgcttttccacggtactggaccattttacatcgcc accaacaatgtagagtacctgcagataggtcctttgtctgatattcacggcaagtcaata cacagatacaccaggttgcagtag >gi568815591f:75782074_75988346|GENSCAN_predicted_peptide_6|494_aa MGRGLWEAWPPAGSSAVAKGNCREEAEGAEDRQPASRRGAGTTAAMAASGPGCRSWCLCP EVPSATFFTALLSLLVSGPRLFLLQQPLAPSGLTLKSEALRNWQVYRLVTYIFVYENPIS LLCGAIIIWRFAGNFERTVGTVRHCFFTVIFAIFSAIIFLSFEAVSSLSKLGEVEDARGF TPVAFAMLGVTTVRSRMRRALVFGMVVPSVLVPWLLLVSLNTPTSDGLTYCYSIDLSERV ALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKIVEPATQALAAVTWSQRSIWFRSC CEQPCGVRCTGPAYRCRKRDVLPSDKVTWLFSNTDKAPRQGTRGRRGQQLAVAADVCPQL HHSSLWLCRARGFSVRVSMCLPFRSSQLTGQDPQRPEKLPDIISFPARLAEGSREADSCP ARSANLRMRKSEVGEKPRCALGTEASARRTIGMYGGFEDSRSDVAQGSAETRPFMSHGRD KHGDLPQPAVAWMK >gi568815591f:75782074_75988346|GENSCAN_predicted_CDS_6|1485_bp atggggcggggcctctgggaggcgtggcctccggccggctcctctgctgttgccaaggga aactgccgcgaggaggcggaaggagcagaggaccggcagccggcgtcgaggcggggcgcg ggaacgacggcggccatggcggcctcggggcccgggtgtcgcagctggtgcttgtgtccc gaggtgccatccgccaccttcttcactgcgctgctctcgctgctggtttccgggcctcgc ctgttcctgctgcagcagcccctggcgccctcgggcctcacgctgaagtccgaggccctt cgcaactggcaagtttacaggctggtaacctacatctttgtctacgagaatcccatctcc ctgctctgcggcgctatcatcatctggcgctttgctggcaatttcgagagaaccgtgggc accgtccgccactgcttcttcaccgtgatcttcgccatcttctccgctatcatcttcctg tcattcgaggctgtgtcatcactgtcaaagctgggggaagtggaggatgccagaggtttc accccagtggcctttgccatgctgggagtcaccaccgtccgttctcggatgaggcgggcc ctggtgtttggcatggttgtgccctcagtcctggttccgtggctcctgctggtttcactt aacacgccaacctcagatggcctcacctactgctattccatcgacctctcagagcgagtg gcactgaagctcgatcagaccttccccttcagcctgatgaggaggatatccgtgttcaag tacgtctcagggtcttcagccgagaggagggcagcccagagccggaaaattgtcgagcca gccacacaggcactggcagctgtgacctggtcccaacgctccatctggtttagaagctgc tgtgagcagccctgtggagtacggtgtactggcccagcttacagatgcagaaagcgagac gttctgccatcagataaagtcacgtggctctttagtaacacggacaaggctcctcgccaa ggaactcgtggcagaagagggcagcagttggcagtagctgccgatgtctgtccccagctc caccattcctccctgtggctgtgccgtgctcgtggtttcagtgtccgtgtgtccatgtgt ctgcccttcaggagctcgcagctgacagggcaggacccacagcggccagagaagcttcca gacattatcagtttccctgctcggttggcggagggcagcagagaagcagattcatgccct gctcgctctgcaaacctcagaatgagaaagagtgaggttggtgagaagccgcgctgtgca ctgggaacagaagccagtgccaggaggaccatcgggatgtacggaggctttgaggacagt agatcagatgttgcacagggcagtgctgagaccaggccctttatgtcccatggcagggac aagcatggagacctcccccaaccagctgtggcatggatgaaatga >gi568815591f:75782074_75988346|GENSCAN_predicted_peptide_7|156_aa MLGGPRGVGQQGDRKKVWGSYLDNEESQKRKEKKRRTRRRRRKKKEKKRKRKEEEEEEEE EEEEGEEGEVGEEREEGEEGKEEGEEKRKEEKKEKRKEEERRRKEEGRGGRGREEEGGGR RRREKKKEEEEKKVTGQNQPEKHVCTSMAVMTRRKC >gi568815591f:75782074_75988346|GENSCAN_predicted_CDS_7|471_bp atgttaggaggacctaggggtgtggggcagcaaggagaccggaagaaggtctggggaagt tatttggacaatgaagagagccagaaaagaaaagaaaagaaaagaagaacaaggaggagg aggagaaagaagaaagagaagaagaggaagaggaaggaagaagaagaggaggaagaggaa gaagaggaagagggagaggagggagaggtgggagaggaaagagaggaaggagaggaagga aaagaggaaggagaggagaagaggaaggaggagaagaaggagaaaagaaaagaagaagaa agaagaagaaaagaagaaggaagaggaggaagaggaagagaagaagaaggaggaggaaga agaagaagagagaagaagaaagaagaagaagaaaagaaagtcacaggtcaaaatcagcca gaaaaacatgtatgtaccagcatggctgtaatgaccagaagaaaatgctaa >gi568815591f:75782074_75988346|GENSCAN_predicted_peptide_8|115_aa MATPPPPRPAKAVVAPQWCGPEPCPGARREQPGCQRPVSELTSHHLCGGDAGVLRALCPS DTLIFVGMHHQCIGKPQWVQQSCGSPNSSTSPQLAAGKYAALLVVSEKWSIKPSV >gi568815591f:75782074_75988346|GENSCAN_predicted_CDS_8|348_bp atggccacgcccccacccccgcggccggcgaaggcggtggtagcgcctcagtggtgtggg cctgagccctgcccaggtgcccgcagagagcagccgggctgccagcgccctgtttctgag ctcacgtcacatcacctctgcggtggtgatgccggtgttcttagagcactgtgtcctagt gatactttgatcttcgtgggcatgcatcatcagtgcattgggaagccccagtgggtgcag cagagctgtggctctcccaactcaagcacatctccacagctagctgccggcaagtacgca gctctcttggtggtgtctgagaaatggagcattaagccctcagtctaa >gi568815591f:75782074_75988346|GENSCAN_predicted_peptide_9|109_aa MSEATDRGSVYQSLEHEKLGVWGTGCKMLVDLPFRGLEDSGPLPTAPLGSAPVRTLYGAS SPTFLSYQRFSAHHHIEAAKAHGFHPLVWQPELYLGPFEPRLEAEWPGM >gi568815591f:75782074_75988346|GENSCAN_predicted_CDS_9|330_bp atgagcgaagctaccgatagaggaagcgtgtaccagagcctagaacacgagaaactcggg gtctgggggacaggttgtaagatgctggtggatctaccattccggggtctggaggacagt ggcccccttcccacagctccactaggcagtgccccagtgagaactctgtatggggcctcc agtcccacattcctctcctaccagaggttctcggctcaccaccacattgaagcggccaag gctcatggctttcaccctctagtgtggcagcctgagctgtatctgggcccctttgagcca aggctggaagctgaatggccagggatgtga >gi568815591f:75782074_75988346|GENSCAN_predicted_peptide_10|762_aa MKAFCCFMINMGDSHVDTSSTVSEAVAEEVSLFSMTDMILFSLIVGLLTYWFLFRKKKEE VPEFTKIQTLTSSVRESSFVEKMKKTILQSTFNWLNRIGCNSSPNGLWGIGFQAFQQLLE EEGGLTMAVTVRSKSQRNLEGTQSQEGKGAAWRAPACQACPGRNIIVFYGSQTGTAEEFA NRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFYDW LQETDVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEED FITWREQFWPAVCEHFGVEATGEESSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPP FDAKNPFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLG KILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASE PSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQARY YSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPAGENGGRALVPMFVRK SQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLY REELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNM ARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVWS >gi568815591f:75782074_75988346|GENSCAN_predicted_CDS_10|2289_bp atgaaagccttctgttgtttcatgatcaacatgggagactcccacgtggacaccagctcc accgtgtccgaggcggtggccgaagaagtatctcttttcagcatgacggacatgattctg ttttcgctcatcgtgggtctcctaacctactggttcctcttcagaaagaaaaaagaagaa gtccccgagttcaccaaaattcagacattgacctcctctgtcagagagagcagctttgtg gaaaagatgaagaaaacgatcttgcaaagcacgttcaattggctgaaccgaattggctgc aactccagccccaacgggctctggggaataggatttcaggcttttcaacagctgctggag gaggagggtggactgacgatggctgtgacagtgagaagcaagtcccagaggaacttagaa gggactcaaagccaggaaggaaagggggcggcctggagggcccccgcctgccaggcctgc ccagggaggaacatcatcgtgttctacggctcccagacggggactgcagaggagtttgcc aaccgcctgtccaaggacgcccaccgctacgggatgcgaggcatgtcagcggaccctgag gagtatgacctggccgacctgagcagcctgccagagatcgacaacgccctggtggttttc tgcatggccacctacggtgagggagaccccaccgacaatgcccaggacttctacgactgg ctgcaggagacagacgtggatctctctggggtcaagttcgcggtgtttggtcttgggaac aagacctacgagcacttcaatgccatgggcaagtacgtggacaagcggctggagcagctc ggcgcccagcgcatctttgagctggggttgggcgacgacgatgggaacttggaggaggac ttcatcacctggcgagagcagttctggccggccgtgtgtgaacactttggggtggaagcc actggcgaggagtccagcattcgccagtacgagcttgtggtccacaccgacatagatgcg gccaaggtgtacatgggggagatgggccggctgaagagctacgagaaccagaagcccccc tttgatgccaagaatccgttcctggctgcagtcaccaccaaccggaagctgaaccaggga accgagcgccacctcatgcacctggaattggacatctcggactccaaaatcaggtatgaa tctggggaccacgtggctgtgtacccagccaacgactctgctctcgtcaaccagctgggc aaaatcctgggtgccgacctggacgtcgtcatgtccctgaacaacctggatgaggagtcc aacaagaagcacccattcccgtgccctacgtcctaccgcacggccctcacctactacctg gacatcaccaacccgccgcgtaccaacgtgctgtacgagctggcgcagtacgcctcggag ccctcggagcaggagctgctgcgcaagatggcctcctcctccggcgagggcaaggagctg tacctgagctgggtggtggaggcccggaggcacatcctggccatcctgcaggactgcccg tccctgcggccccccatcgaccacctgtgtgagctgctgccgcgcctgcaggcccgctac tactccatcgcctcatcctccaaggtccaccccaactctgtgcacatctgtgcggtggtt gtggagtacgagaccaaggctggccgcatcaacaagggcgtggccaccaactggctgcgg gccaaggagcctgccggggagaacggcggccgtgcgctggtgcccatgttcgtgcgcaag tcccagttccgcctgcccttcaaggccaccacgcctgtcatcatggtgggccccggcacc ggggtggcacccttcataggcttcatccaggagcgggcctggctgcgacagcagggcaag gaggtgggggagacgctgctgtactacggctgccgccgctcggatgaggactacctgtac cgggaggagctggcgcagttccacagggacggtgcgctcacccagctcaacgtggccttc tcccgggagcagtcccacaaggtctacgtccagcacctgctaaagcaagaccgagagcac ctgtggaagttgatcgaaggcggtgcccacatctacgtctgtggggatgcacggaacatg gccagggatgtgcagaacaccttctacgacatcgtggctgagctcggggccatggagcac gcgcaggcggtggactacatcaagaaactgatgaccaagggccgctactccctggacgtg tggagctag >gi568815591f:75782074_75988346|GENSCAN_predicted_peptide_11|162_aa MVALCSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQ SGCLYRLRALGERHTMDLTVEGFQSWMWRGLTFLLPFLFFGHFWQLFNALTLFNLAQDPQ CKEWQVLMCGFPFLLLFLGNFFTTLRVVHHKFHSQRHGSKKD >gi568815591f:75782074_75988346|GENSCAN_predicted_CDS_11|489_bp atggtggctctctgctccaggatcaaaggctggtgggtgttccatcactacgtgtccacc ttcctgtcgggagtcatgctgacgtggcccgacggtctcatgtaccagaaattccggaac caattcctctccttttccatgtaccagagcttcgtgcagtttctccagtactactaccag agcggctgcctctaccgcctgcgggcgctgggcgagcggcacaccatggacctcactgtg gagggcttccagtcctggatgtggcggggcctcaccttcctgctgccttttcttttcttt ggacacttctggcagctttttaacgcgctgacgttgttcaacctggcccaggaccctcag tgcaaggagtggcaggtgcttatgtgcggctttcccttcctcctccttttcctcggcaat ttcttcaccaccctgagggttgtgcaccacaagtttcacagtcagcggcacgggagcaag aaggattga