GENSCAN 1.0	Date run:  4-Nov-116	Time: 07:00:58

Sequence gi568815591f:135131979_135358489 : 226511 bp : 45.00% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  12039  12117   79  1  1   66   55    99 0.019   3.01
 1.02 Intr +  23237  23258   22  2  1   78   96    14 0.002  -1.25
 1.03 Term +  32440  33021  582  0  0   81   43   318 0.081  21.10
 1.04 PlyA +  33297  33302    6                              -1.75

 2.03 PlyA -  33872  33867    6                               1.05
 2.02 Term -  34893  34633  261  0  0   84   49   144 0.992   5.63
 2.01 Init -  36900  36808   93  0  0   64   86   171 0.173  14.88
 2.00 Prom -  44480  44441   40                              -3.46

 3.14 PlyA -  45015  45010    6                               1.05
 3.13 Term -  54337  54173  165  1  0  134   45   244 0.999  22.62
 3.12 Intr -  55191  54994  198  0  0   55   88   242 0.985  20.45
 3.11 Intr -  56567  56455  113  0  2   57  102   201 0.875  18.50
 3.10 Intr -  57474  57366  109  0  1   75   64   225 0.989  18.66
 3.09 Intr -  61421  61253  169  1  1   84   96   196 0.937  19.95
 3.08 Intr -  61694  61600   95  2  2   93   66   123 0.999   9.36
 3.07 Intr -  62648  62592   57  2  0  119   81    -8 0.509   0.68
 3.06 Intr -  63106  62956  151  0  1   98  105   109 0.998  13.76
 3.05 Intr -  64359  64166  194  0  2   83   94   136 0.999  11.99
 3.04 Intr -  66173  66015  159  2  0   70   80   140 0.999  11.58
 3.03 Intr -  72455  72290  166  1  1   83  115    87 0.517  10.86
 3.02 Intr -  74080  73950  131  1  2   33   74   193 0.997  11.89
 3.01 Init -  74210  74124   87  2  0   63   72    60 0.912   1.23
 3.00 Prom -  74771  74732   40                              -6.66

 4.04 PlyA -  74904  74899    6                              -1.75
 4.03 Term -  77020  76787  234  1  0  105   49   208 0.973  14.92
 4.02 Intr -  77777  77598  180  2  0   99   51   178 0.979  15.26
 4.01 Init -  79524  79402  123  0  0   95   80   269 0.930  26.97
 4.00 Prom -  81212  81173   40                              -5.36

 5.00 Prom +  88911  88950   40                              -4.26
 5.01 Init + 100001 100060   60  1  0   83   99    63 0.890   8.15
 5.02 Intr + 108541 108738  198  0  0   -4   86   131 0.101   3.25
 5.03 Intr + 110803 110878   76  0  1   79   90    53 0.897   3.69
 5.04 Intr + 111348 111432   85  1  1   57  110   118 0.981   9.78
 5.05 Intr + 113310 113549  240  0  0   83   58   330 0.538  26.16
 5.06 Intr + 114439 114724  286  1  1   57   83   411 0.993  34.84
 5.07 Intr + 119818 119891   74  0  2   75   94    61 0.790   3.60
 5.08 Intr + 123136 123247  112  1  1   81   91    63 0.891   6.28
 5.09 Term + 126440 126514   75  1  0  125   38   114 0.993   7.94
 5.10 PlyA + 127009 127014    6                               1.05

 6.13 PlyA - 128386 128381    6                               1.05
 6.12 Term - 129553 129536   18  1  0  111   47     9 0.016  -2.58
 6.11 Intr - 135501 135401  101  1  2  114   78    -1 0.086   1.33
 6.10 Intr - 138136 138041   96  2  0   92   74    78 0.676   6.78
 6.09 Intr - 138342 138234  109  0  1  106   62   137 0.936  12.76
 6.08 Intr - 139462 139431   32  2  2   54   86    16 0.014  -4.15
 6.07 Intr - 142678 142623   56  0  2   94   94    90 0.503   8.82
 6.06 Intr - 145419 145244  176  0  2   88  103   149 0.474  15.14
 6.05 Intr - 156419 156260  160  1  1  133   77    23 0.129   5.69
 6.04 Intr - 175332 175193  140  0  2  103  -24   129 0.001   2.46
 6.03 Intr - 185731 185662   70  0  1   73   99    68 0.030   5.58
 6.02 Intr - 211895 211694  202  0  1  127   92    -3 0.017   2.34
 6.01 Init - 214354 214249  106  1  1   52   70    97 0.025   4.68

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +  32464  33021  558  0  0   90   43   306 0.805  22.43
S.002 Init +  38334  38442  109  2  1   86  100   101 0.868  10.03
S.003 Init + 108547 108738  192  0  0   45   86   131 0.853   7.57
S.004 Init - 138640 138593   48  1  0   86   94    55 0.914   7.09
S.005 Term - 214745 214638  108  2  0   15   44   159 0.948   2.71
S.006 Intr - 217444 217286  159  1  0   51  116    75 0.902   6.78


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591f:135131979_135358489|GENSCAN_predicted_peptide_1|227_aa
XGEGCQRFSSPYRCEAETTFEANEAKSLYVFMGKVPRQRAVEMAGPRPRWRDQLLFMSII
VLVIVVICLMFYALLWEAGNLTDLPNLRIGFYNFCLWNEDTSTLQCHQFPELEALGVPRV
GLGLARLGVYGSLVLTLFAPQPLLLAQCNSDERAWRLAVGFLAVSSVLLAGGLGLFLSYV
WKWVRLSLPGPGFLALGSAQALLILLLIAMAVFPLRAERAESKLESC

>gi568815591f:135131979_135358489|GENSCAN_predicted_CDS_1|684_bp
ngaggagaaggctgccagcgtttctcatctccctaccgctgtgaagcagaaacaacattt
gaggctaatgaggccaagagtctatatgtctttatgggtaaggtcccccggcagagggca
gtagagatggccggcccaaggcctcggtggcgcgaccagctgctgttcatgagcatcata
gtcctcgtgattgtggtcatctgcctgatgttttacgctcttctctgggaggctggcaac
ctcactgacctgcccaacctgagaatcggcttctataacttctgcctgtggaatgaggac
accagcaccctacagtgtcaccagttccctgagctggaagccctgggggtgcctcgggtt
ggcctgggcctggccaggcttggcgtgtacgggtccctggtcctcaccctctttgccccc
cagcctctcctcctagcccagtgcaacagtgatgagagagcgtggcggctggcagtgggc
ttcctggctgtgtcctctgtgctgctggcaggcggcctgggcctcttcctctcctatgtg
tggaagtgggtcaggctctccctcccggggcctgggtttctagctctgggcagcgcccag
gccttactcatcctcttgcttatagccatggctgtgttccctctgagggctgagagggct
gagagcaagcttgagagctgctaa

>gi568815591f:135131979_135358489|GENSCAN_predicted_peptide_2|117_aa
MADSPGGYKECGTNEGPQEDENGSSASGSSKSRKQEKACEQPALAGADNPEHSPPCSVSP
HTSSGSSSEEEDSGKQALAPGLSPSQRPGGSSSACSRSPEEEEEEDVLKYVREIFFS

>gi568815591f:135131979_135358489|GENSCAN_predicted_CDS_2|354_bp
atggctgacagcccaggtggctacaaagaatgtggcaccaatgaaggcccccaagaggat
gagaatggcagcagtgccagtggcagcagcaagagccgcaaacaggaaaaggcctgcgag
cagccggccctggcgggggctgataacccagagcactcccctccctgctccgtgtcgcct
cacacaagttctgggagcagcagtgaggaagaggacagtgggaaacaggcactggctcca
ggcctcagcccttcccagaggccggggggttccagctctgcctgtagcaggagccctgag
gaggaggaggaagaggatgtgctgaaatacgtccgggagatctttttcagctag

>gi568815591f:135131979_135358489|GENSCAN_predicted_peptide_3|597_aa
MGPLTLRRVALRPVGLDAMCLEIFLRRGKLFALQAEIHRLKKEEQQPEEEEALVQHKLPP
YVSNMDRLGDSELAMVCSQRNASLSQSPRVGFLSSLLPQSKKSPSRLSPAQGPPQPQSSA
KKESFGGQGTKGKDPTSGAKDGKSLLSGLATGESGWSQHRQRRLQDHGKERKELFSTTTS
QCAEKKPEASGPEAEPCPELHTEPVEPLTRASSAGPEGGGVRPEQPFIVLGQEEYGEHHS
SIMHCRVDCSGRRVASLDVDGVIKVWSFNPIMQTKASSISKSPLLSLEWATKRDRLLQFQ
WAPSRARPHGKWLPLLLLGSGVGTVRLYDTEAKKNLCEININDNMPRILSLACSPNGASF
VCSAAAPSLTSQVDFSAPDIGSKGMNQVPGRLLLWDTKTMKQQLQFSLDPEPIAINCTAF
NHNGNLLVTGAADGVIRLFDMQQHECAMSWRAHYGEVYSVEFSYDENTVYSIGEDGKFIQ
WNIHKSGLKVSEYSLPSDATGPFVLSGYSGYKQVQVPRGRLFAFDSEGNYMLTCSATGGV
IYKLGGDEKVLESCLSLGGHRAPVVTVDWSTAMDCGTCLTASMDGKIKLTTLLAHKA

>gi568815591f:135131979_135358489|GENSCAN_predicted_CDS_3|1794_bp
atgggccccttgacgctgaggcgagtggcactcagaccagtgggcttggatgcgatgtgt
ctagaaatcttcctccgcagagggaagctttttgcattgcaagctgaaatccaccgactg
aagaaagaggagcaacagccagaagaggaagaggccttggtccaacacaaattgcctcct
tatgtctccaacatggaccgcctgggggactcggaacttgccatggtgtgcagccaaagg
aatgcctccctctcccagtcacctcgtgtgggcttcctgtcctcgctgctgcctcagagt
aagaagagcccctcaaggttgtcgcctgctcagggccctcctcaacctcagagctcggcc
aagaaagagtccttcggtggtcagggcaccaagggaaaggacccgacgtccggagccaag
gatgggaagagcctcctcagcgggctggccactggggagtccggttggtcacagcaccgg
cagcggcgcctgcaggaccatggcaaggagaggaaggagcttttctccacaaccacttcc
cagtgtgcagagaagaaaccagaagccagtggcccagaggctgagccctgcccagagctc
cacacggagccagtggagccactgactcgggcatcctcggcaggccctgagggtggagga
gtccgccccgagcagccctttattgtgctgggacaggaggagtacggggaacaccactca
tccatcatgcactgcagagtggactgctctgggaggagagtcgccagcttagacgtagat
ggggtcatcaaagtgtggtccttcaaccccatcatgcagaccaaagcatcctccatttcc
aaatcaccgctgctgtctttggaatgggccaccaaacgggacagactgctgcagtttcag
tgggcgccctcccgtgccaggccccacgggaagtggcttccgctgctcttgctgggcagt
ggtgtgggaacagtgcgtctctatgacacggaagccaagaagaatctctgtgaaatcaat
atcaacgacaacatgcccagaatcctgtctcttgcgtgcagccccaacggggcctctttc
gtctgttcggcagcagctccgagcctcacttcccaggtggacttctcagcaccagacatc
ggcagcaagggcatgaaccaggttcctggcaggctgctgctgtgggacacgaaaaccatg
aagcagcagctccagttctccctggatccagaacccattgctatcaactgtacagccttc
aatcacaacgggaacctgctggtcacaggggcagctgatggcgtcatccggctgtttgac
atgcagcagcatgagtgcgcgatgagctggagggcccactacggggaggtctactctgtg
gagttcagctatgatgagaacaccgtgtacagcatcggcgaggacgggaagttcatccag
tggaacatccacaagagtggcctcaaggtatccgagtacagcctcccctcagatgccacg
ggcccctttgtgctgtctggatacagcggctacaagcaggttcaagtccccaggggccga
ctcttcgcttttgactcggagggaaattacatgctgacatgttctgccacaggcggcgtc
atctacaagctgggtggcgatgagaaggttctggagagctgcttgagcctaggtggccac
cgagcccctgtggtcaccgtggactggagcactgccatggactgtgggacctgcctcacc
gcctccatggatggcaagatcaagctgaccaccctcctggcccataaagcctga

>gi568815591f:135131979_135358489|GENSCAN_predicted_peptide_4|178_aa
MAEAVERTDELVREYLLFRGFTHTLRQLDAEIKADKEKGFRVDKIVDQLQQLMQVYDLAA
LRDYWSYLERRLFSRLEDIYRPTIHKLKTSLFRFYLVYTIQTNRNDKAQEFFAKQATELQ
NQAEWKDWFVLPFLPSPDTNPTFATYFSRQWADTFIVSLHNFLSVLFQCMHILSVAWG

>gi568815591f:135131979_135358489|GENSCAN_predicted_CDS_4|537_bp
atggcggaggccgtggagcgcactgacgagctggtccgggagtacctgctcttccgcggg
ttcacgcacacactgcggcagctggacgccgagatcaaggcggacaaggagaaggggttc
cgggtggataagattgtggaccagctgcagcagttaatgcaggtgtatgacttggctgcc
cttcgggattattggagctacttggagcgtcggctcttcagccgcttggaggatatatac
agacccacaatccacaagctgaaaaccagcctgtttcgattttatcttgtctacacaatc
cagacaaacagaaatgacaaggctcaggagttctttgcaaagcaggccacggaactccag
aaccaggctgagtggaaggattggtttgtcctgcccttcctgccatccccggacaccaac
cccacctttgctacctacttttctcgacagtgggctgacaccttcattgtgtccctgcac
aacttcctgagcgtcctgtttcagtgcatgcatatcctttcagttgcctggggctga

>gi568815591f:135131979_135358489|GENSCAN_predicted_peptide_5|401_aa
MGKIDVDKILFFNQEIRLWQLIMATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQAR
HRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGH
ASSLEEVKKEYASMYSGNDSLLSNSFPQNGSSPWCPTEAVRKDAEEEEDEEEEDQEEEEE
EEEEEEEEEEEEEEEEEEEEKKVILYSPGTLSPDLMEFERYLNFYKQTMDLLTGSGIITP
QEAALPIVSAAISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGV
DSQGASCSLVSTPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQ
IINFFKGLSCANTQVKQEASFPVDEEMIMLQCTETFDDEDL

>gi568815591f:135131979_135358489|GENSCAN_predicted_CDS_5|1206_bp
atggggaagattgatgtggacaagatcctctttttcaatcaagaaatcaggctgtggcag
cttataatggcaacccctgaagaaaacagcaatccccatgacagagcaacaccccagctg
ccagcacagctgcaggagcttgagcatcgggtggcccggagacggctgtcccaggcccgc
caccgagccaccctggcagcgctcttcaacaacctcaggaagacagtgtactctcagtct
gatctcatagcctcaaagtggcaggttctgaataaggcaaagagtcatattccagaactg
gagcaaaccctggataatttgctgaagctgaaagcatccttcaacctggaagatgggcat
gcaagcagcttagaggaggtcaagaaagaatatgccagcatgtattctggaaatgacagc
ctgctttcaaacagttttcctcagaatggttcctccccttggtgcccaactgaggcagtc
aggaaggatgctgaggaggaggaagatgaggaagaggaagatcaagaagaagaggaggag
gaagaagaagaggaggaggaggaagaggaggaagaggaagaggaggaggaggaagaggag
aaaaaagtgatcttatactccccaggaactttgtcgcctgacctcatggaatttgaacgg
tatctcaacttttacaaacagacgatggaccttctgactggcagcgggatcattaccccg
caggaggcggcgctgcccatcgtctccgcggccatctcccacctgtggcagaacctctcg
gaggagaggaaggccagcctccggcaggcctgggcgcagaagcaccgcggccctgcgacc
ctggcggaggcctgccgagagccggcctgtgccgagggcagcgtgaaggacagcggcgtg
gacagccagggggccagctgctcgctggtctccacgcccgaggagatcctttttgaggat
gcctttgatgtggcaagcttcctggacaaaagtgaggttccgagtacatctagctccagt
tcagtgcttgccagctgcaacccagaaaacccagaggagaagtttcagctctatatgcag
atcatcaacttttttaaaggccttagctgtgcaaacactcaagtaaagcaggaagcatcc
tttcccgttgatgaagagatgatcatgttgcagtgcacagagacctttgacgatgaagat
ttgtaa

>gi568815591f:135131979_135358489|GENSCAN_predicted_peptide_6|421_aa
MVNYVKRTGGHMGQRLKAIHRFGNLEVTDHLFQREGEDGFLDQPSGLKRYQWLGYARLTC
DTLDVRKPGPHFCGTSTTCVTTEYLCCFALWVSFLIYKTRDLQGSQKKTPVAMNSAVTSR
EHSTYSHFLTALGGLMAVPFILAKDLCLQQDPLTQSYLISTIFFAPASACSCKLPIPQGG
TFAFVVISLAMLSLPSWNCPEWTLSASQVNTNFPEFTEKWQKRIQEGAIMVTSCVRMLVG
FSGLTGFLMGFICSLAVAPTNCLVALPLLDSAGNNAGIQWGISAMYCFVLRLRKDELWPF
GSPRAYGHRSVVVKYVEMNLSRSLFAFGFSIYCGLTIPNRVSKNPEMLQTGVLQPAQVVQ
MLLTMGMFISGFLGFLLDNTIPAEDDALLAFHCHCKGKRKTQPSIGSTRNIPGRTMAAKA
G

>gi568815591f:135131979_135358489|GENSCAN_predicted_CDS_6|1266_bp
atggtcaactatgtcaagcgcactggaggccacatgggacaacgactgaaagcaattcat
agatttggaaatttggaggtcactgatcaccttttccagagggaaggtgaggatggtttt
cttgaccagccgtcaggacttaaacgttaccagtggttgggatacgcacggttgacatgt
gacacactcgatgttaggaaacctggaccccacttctgtgggacctctaccacctgtgtg
accactgaatacctatgttgctttgctttgtgggtcagtttcctcatctataaaacgagg
gatttgcaaggaagccagaagaagaccccagttgccatgaactccgccgtcactagccgt
gagcactccacttactcgcacttcctcacagccctggggggcctcatggcggtgccattc
atcctggccaaggacctgtgcctgcagcaggaccccctgacacagagctacctcatcagc
accattttctttgctccagcatctgcatgctcctgcaagctgcccattccccagggaggt
acgtttgcttttgtggtaatttctctggccatgctctcccttccctcctggaattgccct
gagtggacactcagtgccagccaggtgaacaccaactttccagaattcactgagaaatgg
cagaagaggatccaagagggtgctatcatggtcacttcctgtgtccggatgctggtgggc
ttctcaggcctgactggctttctcatgggtttcatctgctccttggccgttgctccaact
aactgcctagtggccctgcccctcttggattctgcaggcaataatgccgggatccagtgg
gggatttctgccatgtattgcttcgtgttgcgtcttcgcaaggatgagctctggccattt
ggttctccacgtgcgtatggccacaggagtgttgtggtcaagtacgtggagatgaacttg
tccaggagcctcttcgcctttggcttctccatctactgtgggctcaccattcccaaccgg
gtgagcaaaaaccccgagatgctccagacaggggttctccagccggcccaggttgttcag
atgctgctgaccatgggcatgttcatcagtggatttctgggttttcttctagacaacacc
atccccgctgaggatgatgccctcctagccttccactgtcattgcaaaggcaaaagaaaa
acacagccttccattggctctaccagaaacatcccagggaggacaatggcagccaaagca
ggatga