GENSCAN 1.0	Date run:  6-Nov-116	Time: 15:47:28

Sequence gi568815589r:33342046_33547530 : 205485 bp : 46.63% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    760    809   50  2  2   39   81   104 0.621   3.20
 1.02 Intr +   2075   2143   69  1  0   40  109    85 0.680   5.18
 1.03 Intr +  10601  10674   74  1  2   62   96    45 0.682   0.90
 1.04 Intr +  12041  12142  102  2  0  106   91    96 0.851  10.99
 1.05 Intr +  21965  22063   99  2  0  111   91    46 0.981   6.43
 1.06 Intr +  22663  22729   67  1  1   86    9    87 0.485  -0.49
 1.07 Intr +  24584  24729  146  1  2   92   96   130 0.666  13.28
 1.08 Term +  27861  27933   73  0  1   97   48    43 0.492  -1.42
 1.09 PlyA +  30180  30185    6                              -0.45

 2.11 PlyA -  30320  30315    6                               1.05
 2.10 Term -  32922  32791  132  0  0   78   39    80 0.147   0.19
 2.09 Intr -  43245  43035  211  2  1  102   39   133 0.320   8.72
 2.08 Intr -  43821  43604  218  0  2   58   84   376 0.988  31.50
 2.07 Intr -  43983  43850  134  1  2   90   99    17 0.505   3.36
 2.06 Intr -  44496  44359  138  1  0  131   79   193 0.999  23.14
 2.05 Intr -  45047  44924  124  2  1   67  105   104 0.957  10.16
 2.04 Intr -  53150  53033  118  1  1   30  101   130 0.001   8.97
 2.03 Intr -  59242  59192   51  0  0   84  115    16 0.012   1.92
 2.02 Intr -  85474  85408   67  2  1  135    4   101 0.021   4.36
 2.01 Init -  97113  97041   73  0  1   64   86    40 0.157   2.63
 2.00 Prom -  97372  97333   40                              -8.86

 3.35 PlyA -  99133  99128    6                               1.05
 3.34 Term - 100166  99998  169  1  1  124   48   293 0.995  26.25
 3.33 Intr - 100473 100256  218  0  2   80   94   308 0.999  27.90
 3.32 Intr - 100925 100807  119  0  2   91   80   170 0.999  16.68
 3.31 Intr - 101413 101276  138  2  0   71  103   117 0.999  11.94
 3.30 Intr - 101847 101721  127  0  1  126   95   204 0.999  25.15
 3.29 Intr - 105504 105378  127  2  1   72   89   277 0.316  26.88
 3.28 Intr - 120768 120632  137  0  2  116   28   156 0.125  11.77
 3.27 Intr - 121089 120988  102  0  0  130   75    94 0.808  12.67
 3.26 Intr - 121396 121202  195  1  0  126    7   278 0.971  23.11
 3.25 Intr - 121875 121786   90  0  0   97   98   158 0.999  17.89
 3.24 Intr - 122116 121992  125  2  2   75   26   124 0.913   5.20
 3.23 Intr - 122921 122834   88  2  1   80  119    40 0.641   5.84
 3.22 Intr - 123314 123260   55  1  1  141   65    71 0.948   9.08
 3.21 Intr - 123852 123689  164  0  2   98   90   188 0.999  18.77
 3.20 Intr - 124180 124026  155  2  2   77   72   157 0.973  12.79
 3.19 Intr - 124380 124263  118  0  1  118  111   123 0.993  17.64
 3.18 Intr - 124664 124524  141  2  0  104   78   148 0.996  15.95
 3.17 Intr - 124942 124867   76  0  1  101   94    75 0.999   8.92
 3.16 Intr - 125217 125069  149  0  2  109   74   158 0.999  15.53
 3.15 Intr - 125823 125646  178  2  1   86   78    86 0.987   7.32
 3.14 Intr - 126100 125985  116  1  2   56   73   100 0.981   4.55
 3.13 Intr - 126377 126276  102  2  0   61   81    86 0.970   5.57
 3.12 Intr - 126521 126463   59  0  2   51   97    53 0.888   1.10
 3.11 Intr - 126827 126707  121  2  1  158   68    43 0.930   9.37
 3.10 Intr - 127076 126913  164  0  2  133  113   147 0.999  21.39
 3.09 Intr - 127296 127162  135  1  0   63   89   117 0.997   9.84
 3.08 Intr - 127622 127454  169  2  1  117   69   208 0.998  21.32
 3.07 Intr - 128146 127967  180  1  0  108   86   175 0.996  19.36
 3.06 Intr - 130075 129959  117  1  0  115   99   140 0.986  18.46
 3.05 Intr - 130367 130161  207  2  0   81   84   177 0.980  15.87
 3.04 Intr - 131428 131299  130  0  1   79   42    82 0.583   3.40
 3.03 Intr - 139129 139050   80  1  2   95   94    42 0.623   3.85
 3.02 Intr - 144436 144274  163  0  1   -2   98    96 0.375   1.58
 3.01 Init - 148552 148500   53  1  2   78   61    39 0.625   0.83
 3.00 Prom - 149231 149192   40                              -0.46

 4.00 Prom + 159105 159144   40                              -1.06
 4.01 Init + 182445 182650  206  2  2  112   74   347 0.995  32.02
 4.02 Intr + 186682 186796  115  1  1  106   71    57 0.993   6.25
 4.03 Intr + 186955 187128  174  0  0   17   87   117 0.788   4.64

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  85474  85383   92  2  2  135   42    89 0.888   6.88
S.002 Term - 164470 164455   16  0  1  128   48    11 0.862  -1.19
S.003 Init - 167188 167085  104  1  2  111   63    78 0.949   7.31


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:33342046_33547530|GENSCAN_predicted_peptide_1|226_aa
XVKNLVIVETARHAGKPFPVVLGPLNVPKPALESMSVTIQVELQCECGRRKEMVICSEAS
STYQRIAAISMASKITDMQLGGSVEISKLITKKEVHQARRLAEAFHISEDSDPFNIRSSG
SKFSDSLKEDARKDLKFVSDVEKEMETLVEAVNKGKNSKKSHSFPPMNRDHRRIIHDLAQ
VYGLESVSYDSEPKRNVVVTAIRNPGSSNLQKITKEPIIDYFDVQD

>gi568815589r:33342046_33547530|GENSCAN_predicted_CDS_1|681_bp
ngtgtgaagaaccttgtcatcgtggaaactgccagacatgctggcaagccattccctgtg
gtactaggccccctgaatgtacccaaacctgcgctagagtccatgagtgtgaccatccag
gtagagctacagtgtgaatgtggacgaagaaaagagatggtgatttgctctgaagcatct
agtacttatcaaagaatagctgcaatctccatggcctctaagataacagacatgcagctt
ggaggttcagtggagatcagcaagttaattaccaaaaaggaagttcatcaagccaggaga
ttagcagaggcatttcatatcagtgaggattctgatcctttcaatatacgttcttcaggg
tcaaaattcagtgatagtttgaaagaagatgccaggaaggacttaaagtttgtcagtgac
gttgagaaggaaatggaaaccctcgtggaggccgtgaataagggaaagaatagtaagaaa
agccacagcttccctcccatgaacagagaccaccgccggatcatccatgacttggcccaa
gtttatggcctggagagcgtgagctatgacagtgaaccgaagcgcaatgtggtggtcact
gccatcaggaatcctgggagcagtaatttacagaaaataaccaaggagccaataattgac
tattttgacgtccaggactaa

>gi568815589r:33342046_33547530|GENSCAN_predicted_peptide_2|421_aa
MQGKEARGRNQGNVLPGGSGHVREGDSYEKELEAQKLLMGSAVEEACIYKSERQNMVQAS
GHRRSTRGSKMVSWSVIAKIQEILQRKMVREFLAEFMSTYVMMVFGLGSVAHMVLNKKYG
SYLGVNLGFGFGVTMGVHVAGRISGAHMNAAVTFANCALGRVPWRKFPVYVLGQFLGSFL
AAATIYSLFYRRSQQGVPPDRQDKNSGWRLYRDVSLLVGLGLGHCRGPVAWGGAQAWLTG
MLQLCLFAITDQENNPALPGTEALVIGILVVIIGVSLGMNTGYAINPSRDLPPRIFTFIA
GWGKQVFSNGENWWWVPVVAPLLGAYLGGIIYLVFIGSTIPREPLKLEDSVAYEDHGITV
LPKMGSHEPTISPLTPVSELQEELYKCSNSKAVLRQFQGQFTALVKDTDLRGISDHRLFA
E

>gi568815589r:33342046_33547530|GENSCAN_predicted_CDS_2|1266_bp
atgcagggcaaagaagcacgtggccgcaaccaagggaacgtgttgcctggagggtcaggc
catgtgagagagggggatagttacgagaaagaattagaggcccagaaacttctaatgggg
tcagccgtggaagaagcctgcatctacaaatctgaaagacaaaacatggttcaagcatcc
gggcacaggcggtccacccgtggctccaaaatggtctcctggtccgtgatagcaaagatc
caggaaatactgcagaggaagatggtgcgagagttcctggccgagttcatgagcacatat
gtcatgatggtattcggccttggttccgtggcccatatggttctaaataaaaaatatggg
agctaccttggtgtcaacttgggttttggcttcggagtcaccatgggagtgcacgtggca
ggccgcatctctggagcccacatgaacgcagctgtgacctttgctaactgtgcgctgggc
cgcgtgccctggaggaagtttccggtctatgtgctggggcagttcctgggctccttcctg
gcggctgccaccatctacagtctcttctacagacggagccagcagggagtccctccggat
agacaggacaagaactctggatggagactgtaccgagacgtgtctctgctggtgggcttg
ggtctggggcactgccgaggtcctgtggcttggggaggggcccaggcgtggctgaccggg
atgctccagctgtgtctcttcgccatcacggaccaggagaacaacccagcactgccagga
acagaggcgctggtgataggcatcctcgtggtcatcatcggggtgtcccttggcatgaac
acaggatatgccatcaacccgtcccgggacctgcccccccgcatcttcaccttcattgct
ggttggggcaaacaggtcttcagcaatggggagaactggtggtgggtgccagtggtggca
ccacttctgggtgcctatctaggtggcatcatctacctggtcttcattggctccaccatc
ccacgggagcccctgaaattggaggattctgtggcgtatgaagaccacgggataaccgta
ttgcccaagatgggatctcatgaacccacgatctctcccctcacccccgtctctgaactc
caagaggagctgtacaaatgctccaattccaaggcagttttaagacagtttcaggggcaa
ttcacagctcttgtcaaggacacagacctgagaggaatttcagatcaccggttgtttgct
gagtga

>gi568815589r:33342046_33547530|GENSCAN_predicted_peptide_3|1488_aa
MWKQPKCSSVDEWINNMRHELLHLVKKGTLDSARVEDLACDSLQLPHCGLRTVLSSPENP
SALETSGLVRRTVMDCTTTIPVCGPGDGDPCFNNSLWARICVQFCAPRCSGGHTVPLLER
SSKALWDERHRGADGPTAVGEKVMEPALEGTGKEGKKASSRKRTLAEPPAKGLLQPVKLS
RAELYKEPTNEELNRLRETEILFHSSLLRLQVEELLKEVRLSEKKKDRIDAFLREVNQRV
VRVPSVPETELTDQAWLPAGVRVPLHQVPYAVKGCFRFLPPAQVTVVGSYLLGTCIRPDI
NVDVALTMPREILQDKDGLNQRYFRKRALYLAHLAHHLAQDPLFGSVCFSYTNGCHLKPS
LLLRPRGKDERLVTVRLHPCPPPDFFRPCRLLPTKNNVRSAWYRGQSPAGDGSPEPPTPR
YNTWVLQDTVLESHLQLLSTILSSAQGLKDGVALLKVWLRQRELDKGQGGFTGFLVSMLV
VFLVSTRKIHTTMSGYQVLRSVLQFLATTDLTVNGISLCLSSDPSLPALADFHQAFSVVF
LDSSGHLNLCADVTASTYHQVQHEARLSMMLLDSRADDGFHLLLMTPKPMIRAFDHVLHL
RPLSRLQAACHRLKLWPELQDNGGDYVSAALGPLTTLLEQGLGARLNLLAHSRPPVPEAA
KFRQFWGSRSELRRFQDGAIREAVVWEAASMSQKRLIPHQVVTHLLALHADIPETCVHYV
GGPLDALIQGLKETSSTGEEALVAAVRCYDDLSRLLWGLEGLPLTVSAVQGAHPVLRYTE
VFPPTPVRPAFSFYETLRERSSLLPRLDKPCPAYVEPMTVVCHLEGSGQWPQDAEAVQRV
RAAFQLRLAELLTQQHGLQCRATATHTDVLKDGFVFRIRVAYQREPQILKEVQSPEGMIS
LRDTAASLRLERDTRQLPLLTSALHGLQQQHPAFSGVARLAKRWVGFLRFLFLVSTFDWK
NNPLFVNLNNELTVEEQVEIRSGFLAARAQLPVMVIVTPQDRKNSVWTQDGPSAQILQQL
VVLAAEALPMLEKQLMDPRGPGDIRTVFRPPLDIYDVLIRLSPRHIPRHRQAVDSPAASF
CRGLLSQPGPSSLMPVLGYDPPQLYLTQLREAFGDLALFFYDQHGGEVIGVLWKPTSFQP
QPFKASSTKGRMVMSRGGELVMVPNVEAILEDFAVLGEGLVQTVEARSESAAACPAMGRQ
KELVSRCGEMLHIRYRLLRQALAECLGTLILVMFGCGSVAQVVLSRGTHGGFLTINLAFG
FAVTLGILIAGQVSGAHLNPAVTFAMCFLAREPWIKLPIYTLAQTLGAFLGAGIVFGLYY
DAIWHFADNQLFVSGPNGTAGIFATYPSGHLDMINGFFDQFIGTASLIVCVLAIVDPYNN
PVPRGLEAFTVGLVVLVIGTSMGFNSGYAVNPARDFGPRLFTALAGWGSAVFTTGQHWWW
VPIVSPLLGSIAGVFVYQLMIGCHLEQPPPSNEEENVKLAHVKHKEQI

>gi568815589r:33342046_33547530|GENSCAN_predicted_CDS_3|4467_bp
atgtggaagcaacccaaatgttcatctgtggatgaatggataaacaacatgaggcatgag
ctactgcacctggtcaagaaaggcactttagacagtgcccgagttgaggatttggcctgt
gactcgctgcagttgccacactgtggccttagaacagtcttatccagtcctgaaaacccc
agtgccttggaaacatcaggactggtcagaaggacagtcatggactgtaccacgaccata
ccggtctgtggcccaggggatggagacccctgctttaacaatagcctttgggccagaatt
tgtgtccagttctgtgctccccgctgtagcggagggcatacggtgcctctcctggagcgc
tccagtaaggctctctgggatgagaggcatcgtggagcggatgggcccacggctgtaggg
gaaaaggtgatggaaccagccctggaaggcacaggcaaagaggggaagaaagcatcctcc
aggaagcgtacattggctgaacctccagcgaagggcctcctgcagccagtgaagctcagc
agggcagaactgtacaaggagcctaccaatgaggagcttaatcgccttcgggagactgag
atcttgttccactccagcttgcttcgtttacaggtagaggagctactaaaggaagtaagg
ctgtcagagaagaagaaggatcggattgatgccttcctacgggaggtcaaccagcgggtt
gtgagggtgccctcagtccctgagacagagctcactgaccaggcatggctcccagctggg
gttcgagtgcccctccaccaagtgccctatgccgtgaagggctgtttccgcttcctgccc
ccagcccaggttactgttgtgggcagctaccttctgggcacctgcatccgaccagacatc
aatgtggatgtggcactgaccatgcccagggaaatcctacaggacaaggacgggctgaac
cagcgctacttccgcaagcgtgccctctacctggcccacttggctcaccacctggcccag
gaccccctctttggcagtgtttgcttctcctacacaaatggctgccacctgaaaccctca
ctgttgctgcggccgcgtggaaaggatgagcgcctggtcactgtacgtctgcatccgtgc
cctccacctgacttcttccgcccgtgccgcttgctgccaaccaagaacaatgtgcgctct
gcctggtaccgagggcagagtcctgcaggggatggtagcccagagcctcctaccccccgc
tataacacatgggtcctgcaagatacagttctcgagtcccatttgcagctgctgtcaacc
attctgagttcagcccagggcctgaaggatggcgtggcacttctgaaggtctggctgcgg
cagcgggagctggacaagggccagggtgggtttactgggttccttgtctccatgctggtt
gtcttccttgtgtctacacgcaagatccataccaccatgagtggctaccaggtcctgaga
agtgtcttgcagtttctggccactacagacctgacagtcaacgggatcagtttatgtctc
agctcagatccctctttgccggccctggctgacttccaccaggccttctccgttgtcttc
ctggattcctcaggccatctcaacctctgtgctgatgtcactgcctctacttaccaccag
gtacagcatgaggcacggctgtctatgatgttgctggacagcagagctgacgacgggttc
cacctgctgttgatgactcccaaacccatgatccgggcttttgaccatgtcctgcatctc
cgtccactgagtcgcctgcaggcagcgtgccaccggctgaagctctggccagagctgcag
gacaatggtggggactatgtctcagctgctttgggccccctgaccaccctcctggagcag
ggcctgggggctcggctgaacctgctggctcactctcgacccccagtcccagaggctgct
aaattccgccagttctggggatcccgctcggagcttcggcgtttccaggacggagccatt
cgggaagctgtggtctgggaggcagcctctatgtcccagaagcgccttattccccaccag
gtggtcacccacctcttggcactccatgctgacatcccagaaacctgtgtccactatgtg
gggggccccctggatgcacttatccaaggcctgaaagagacctccagcacaggtgaggag
gccctggtagcggcggtacgttgctacgacgacctcagtcgcctactgtgggggctagag
ggtctcccactgaccgtgtctgctgttcagggagctcacccagtgctgcgctacacagag
gtgttcccaccaactccagtccgtccagccttctccttctatgagactctgcgggagcgg
tcctcactgctgccccggctcgataagccctgtccggcctacgtggagcccatgaccgtg
gtttgtcacctggagggcagtggccagtggccacaggacgctgaggccgtgcagcgggtc
cgagctgccttccagctgcgcctggcagagctgttgacacaacagcatggtctgcagtgc
cgtgccactgccacgcacacggatgtccttaaggatggatttgtgtttcggattcgcgtg
gcctatcagcgggagccccagatcctgaaggaggtgcagagcccagaggggatgatctcg
ctgagggacacagctgcctccctccgccttgagagagacacaaggcagttgccactgctc
accagtgccctgcacggactgcagcagcagcacccagccttctctggtgtggcacggctg
gccaagcggtgggttggcttccttcgattccttttcttggtatcaacgtttgattggaag
aacaaccccctctttgtcaacctcaataatgagctcactgtggaggagcaggtggagatc
cgcagtggcttcctggcagctcgggcacagctccccgtcatggtcattgttaccccccaa
gaccgcaaaaactctgtgtggacacaggatggaccctcagcccagatcctgcagcagctt
gtggtcctggcagctgaagccctgcccatgttagagaagcagctcatggatccccgggga
cctggggacatcaggacagtgttccggccgcccttggacatttacgacgtgctgattcgc
ctgtctcctcgccatatcccgcggcaccgccaggctgtggactcgccagctgcctccttc
tgccggggcctgctcagccagccggggccctcatccctgatgcccgtgctgggctatgat
cctcctcagctctatctgacgcagctcagggaggcctttggggatctggcccttttcttc
tatgaccagcatggtggagaggtgattggtgtcctctggaagcccaccagcttccagccg
cagcccttcaaggcctccagcacaaaggggcgcatggtgatgtctcgaggtggggagcta
gtaatggtgcccaatgttgaagcaatcctggaggactttgctgtgctgggtgaaggcctg
gtgcagactgtggaggcccgaagtgagagcgccgccgcctgccccgccatgggtcgacag
aaggagctggtgtcccgctgcggggagatgctccacatccgctaccggctgctccgacag
gcgctggccgagtgcctggggaccctcatcctggtgatgtttggctgtggctccgtggcc
caggttgtgctcagccggggcacccacggtggtttcctcaccatcaacctggcctttggc
tttgctgtcactctgggcatcctcatcgctggccaggtctctggggcccacctgaaccct
gccgtgacctttgccatgtgcttcctggctcgtgagccctggatcaagctgcccatctac
accctggcacagacgctgggagccttcttgggtgctggaatagtttttgggctgtattat
gatgcaatctggcacttcgccgacaaccagctttttgtttcgggccccaatggcacagcc
ggcatctttgctacctacccctctggacacttggatatgatcaatggcttctttgaccag
ttcataggcacagcctcccttatcgtgtgtgtgctggccattgttgacccctacaacaac
cccgtcccccgaggcctggaggccttcaccgtgggcctggtggtcctggtcattggcacc
tccatgggcttcaactccggctatgccgtcaaccctgcccgggactttggcccccgcctt
tttacagcccttgcgggctggggctctgcagtcttcacgaccggccagcattggtggtgg
gtgcccatcgtgtccccactcctgggctccattgcgggtgtcttcgtgtaccagctgatg
atcggctgccacctggagcagcccccaccctccaacgaggaagagaatgtgaagctggcc
catgtgaagcacaaggagcagatctga

>gi568815589r:33342046_33547530|GENSCAN_predicted_peptide_4|165_aa
MRKLLSFGRRLGQALLSSMDQEYAGRGYHIRDWELRKIHRAAIKGDAAEVEHCLTRRFRD
LDVRDRKDRTVLHLACAHGRVQVVTLLLDRKCQINICDRLNRTPLMKAVHCQEEACAIIL
LKRGANPNIKDIYGNTALHYAVYNEGTSLAERLLSHHANIEALNK

>gi568815589r:33342046_33547530|GENSCAN_predicted_CDS_4|495_bp
atgaggaagctcctcagttttgggagacgcctgggccaggcgctcctgagctccatggac
caagagtatgcgggtcgggggtaccacattcgggactgggaactgcggaagatccacagg
gcggccatcaagggcgacgccgcagaggtggagcactgcctgacgcgcaggttccgggac
ttggacgtccgcgacagaaaagacaggactgttctacatttggcctgtgcccatggccgt
gtgcaagtggtcactctcttgctggacagaaaatgccagatcaacatctgtgacagacta
aacaggacacctttaatgaaggctgtacactgccaggaagaggcttgtgccattattctc
ctgaaacgtggcgccaatccaaacattaaggatatctacggcaacactgctctccattat
gccgtgtataatgaggggacttcactggcagaaagactgctttcccaccatgcaaatatt
gaagcactaaacaag