GENSCAN 1.0	Date run:  8-Nov-116	Time: 11:52:41

Sequence gi568815589r:33285156_33487065 : 201910 bp : 48.13% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5418   5494   77  2  2   78   52    74 0.465   1.36
 1.02 Intr +   9413  10272  860  2  2  106   97   371 0.639  30.80
 1.03 Intr +  57650  57699   50  0  2   39   81   104 0.368   3.20
 1.04 Intr +  58965  59033   69  2  0   40  109    85 0.526   5.18
 1.05 Intr +  67491  67564   74  2  2   62   96    45 0.656   0.90
 1.06 Intr +  68931  69032  102  0  0  106   91    96 0.842  10.99
 1.07 Intr +  78855  78953   99  0  0  111   91    46 0.981   6.43
 1.08 Intr +  79553  79619   67  2  1   86    9    87 0.485  -0.49
 1.09 Intr +  81474  81619  146  2  2   92   96   130 0.666  13.28
 1.10 Term +  84751  84823   73  1  1   97   48    43 0.492  -1.42
 1.11 PlyA +  87070  87075    6                              -0.45

 2.11 PlyA -  87210  87205    6                               1.05
 2.10 Term -  89812  89681  132  1  0   78   39    80 0.147   0.19
 2.09 Intr - 100135  99925  211  0  1  102   39   133 0.320   8.72
 2.08 Intr - 100711 100494  218  1  2   58   84   376 0.988  31.50
 2.07 Intr - 100873 100740  134  2  2   90   99    17 0.505   3.36
 2.06 Intr - 101386 101249  138  2  0  131   79   193 0.999  23.14
 2.05 Intr - 101937 101814  124  0  1   67  105   104 0.957  10.16
 2.04 Intr - 110040 109923  118  2  1   30  101   130 0.001   8.97
 2.03 Intr - 116132 116082   51  1  0   84  115    16 0.012   1.92
 2.02 Intr - 142364 142298   67  0  1  135    4   101 0.021   4.36
 2.01 Init - 154003 153931   73  1  1   64   86    40 0.157   2.63
 2.00 Prom - 154262 154223   40                              -8.86

 3.34 PlyA - 156023 156018    6                               1.05
 3.33 Term - 157056 156888  169  2  1  124   48   293 0.995  26.25
 3.32 Intr - 157363 157146  218  1  2   80   94   308 0.999  27.90
 3.31 Intr - 157815 157697  119  1  2   91   80   170 0.999  16.68
 3.30 Intr - 158303 158166  138  0  0   71  103   117 0.999  11.94
 3.29 Intr - 158737 158611  127  1  1  126   95   204 0.999  25.15
 3.28 Intr - 162394 162268  127  0  1   72   89   277 0.316  26.88
 3.27 Intr - 177658 177522  137  1  2  116   28   156 0.125  11.77
 3.26 Intr - 177979 177878  102  1  0  130   75    94 0.808  12.67
 3.25 Intr - 178286 178092  195  2  0  126    7   278 0.971  23.11
 3.24 Intr - 178765 178676   90  1  0   97   98   158 0.999  17.89
 3.23 Intr - 179006 178882  125  0  2   75   26   124 0.913   5.20
 3.22 Intr - 179811 179724   88  0  1   80  119    40 0.641   5.84
 3.21 Intr - 180204 180150   55  2  1  141   65    71 0.948   9.08
 3.20 Intr - 180742 180579  164  1  2   98   90   188 0.999  18.77
 3.19 Intr - 181070 180916  155  0  2   77   72   157 0.973  12.79
 3.18 Intr - 181270 181153  118  1  1  118  111   123 0.993  17.64
 3.17 Intr - 181554 181414  141  0  0  104   78   148 0.996  15.95
 3.16 Intr - 181832 181757   76  1  1  101   94    75 0.999   8.92
 3.15 Intr - 182107 181959  149  1  2  109   74   158 0.999  15.53
 3.14 Intr - 182713 182536  178  0  1   86   78    86 0.987   7.32
 3.13 Intr - 182990 182875  116  2  2   56   73   100 0.981   4.55
 3.12 Intr - 183267 183166  102  0  0   61   81    86 0.970   5.57
 3.11 Intr - 183411 183353   59  1  2   51   97    53 0.888   1.10
 3.10 Intr - 183717 183597  121  0  1  158   68    43 0.930   9.37
 3.09 Intr - 183966 183803  164  1  2  133  113   147 0.999  21.39
 3.08 Intr - 184186 184052  135  2  0   63   89   117 0.997   9.84
 3.07 Intr - 184512 184344  169  0  1  117   69   208 0.998  21.32
 3.06 Intr - 185036 184857  180  2  0  108   86   175 0.996  19.36
 3.05 Intr - 186965 186849  117  2  0  115   99   140 0.986  18.46
 3.04 Intr - 187257 187051  207  0  0   81   84   177 0.972  15.87
 3.03 Intr - 188318 188189  130  1  1   79   42    82 0.588   3.40
 3.02 Intr - 196019 195940   80  2  2   95   94    42 0.620   3.85
 3.01 Intr - 201326 201164  163  1  1   -2   98    96 0.184   1.58

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 142364 142273   92  0  2  135   42    89 0.888   6.88


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:33285156_33487065|GENSCAN_predicted_peptide_1|538_aa
MAEAPPVSGIVPARAGLGPFQGAEIGQVPYDEISAVHQHSYHPSGSKPKSQQTSFQSSPC
NKSPKSHGLQNQPWQKLRNEKHHIRVKKAQSLAEQTSDTAGLESSTRSESGTDLREHSPS
ESEKEVVGADPRGAKPKKATQFVYSYGRGPKVKGKLKCEWSNRTTPKPEDAGPESTKPVG
VFHPDSSEASSRKGVLDGYGARRNEQRRYPQKRPPWEVEGARPRPGRNPPKQEGHRHTNA
GHRNNMGPIPKDDLNERPAKSTCDSENLAVINKSSRRVDQEKCTVRRQDPQVVSPFSRGK
QNHVLKNVETHTGVKNLVIVETARHAGKPFPVVLGPLNVPKPALESMSVTIQVELQCECG
RRKEMVICSEASSTYQRIAAISMASKITDMQLGGSVEISKLITKKEVHQARRLAEAFHIS
EDSDPFNIRSSGSKFSDSLKEDARKDLKFVSDVEKEMETLVEAVNKGKNSKKSHSFPPMN
RDHRRIIHDLAQVYGLESVSYDSEPKRNVVVTAIRNPGSSNLQKITKEPIIDYFDVQD

>gi568815589r:33285156_33487065|GENSCAN_predicted_CDS_1|1617_bp
atggcggaggcgcctcctgtctcaggtattgtcccggcccgagcgggactgggccccttt
cagggagcggaaattgggcaggtcccttatgatgaaatctctgctgttcatcagcatagt
tatcatccgtcaggaagcaaacctaagagtcagcagacgtctttccagtcctctccttgt
aataaatcgcccaagagccatggccttcagaatcaaccttggcagaaattgaggaatgag
aagcaccatatcagagtcaagaaagcacagagtcttgctgagcagacctcagatacagct
ggattagagagctcgaccagatcagagagtgggacagacctcagagagcatagtccttct
gagagtgagaaggaagttgtgggtgcagatcccaggggagcaaaacccaaaaaagcaaca
cagtttgtatacagctatggtagaggaccaaaagtcaaggggaaactcaaatgtgaatgg
agtaaccgaacaactccaaaaccggaggatgctggacccgaaagtaccaaacctgtgggg
gttttccaccctgactcttcagaggcatcctctagaaaaggagtattggatgggtatgga
gccagacgaaatgagcagagaagatacccacagaaaaggcctccctgggaagtggagggg
gccaggccacgaccaggcagaaatccaccaaaacaggagggccaccgacatacaaacgca
ggacacagaaacaacatgggccccattccaaaggatgacctcaatgaaagaccagcaaaa
tctacctgtgacagtgagaacttggcagtcatcaacaagtcttccaggagggttgaccaa
gagaaatgcactgtacggaggcaggatcctcaagtagtatctcctttctcccgaggcaaa
cagaaccatgtgctaaagaatgtggaaacgcacacaggtgtgaagaaccttgtcatcgtg
gaaactgccagacatgctggcaagccattccctgtggtactaggccccctgaatgtaccc
aaacctgcgctagagtccatgagtgtgaccatccaggtagagctacagtgtgaatgtgga
cgaagaaaagagatggtgatttgctctgaagcatctagtacttatcaaagaatagctgca
atctccatggcctctaagataacagacatgcagcttggaggttcagtggagatcagcaag
ttaattaccaaaaaggaagttcatcaagccaggagattagcagaggcatttcatatcagt
gaggattctgatcctttcaatatacgttcttcagggtcaaaattcagtgatagtttgaaa
gaagatgccaggaaggacttaaagtttgtcagtgacgttgagaaggaaatggaaaccctc
gtggaggccgtgaataagggaaagaatagtaagaaaagccacagcttccctcccatgaac
agagaccaccgccggatcatccatgacttggcccaagtttatggcctggagagcgtgagc
tatgacagtgaaccgaagcgcaatgtggtggtcactgccatcaggaatcctgggagcagt
aatttacagaaaataaccaaggagccaataattgactattttgacgtccaggactaa

>gi568815589r:33285156_33487065|GENSCAN_predicted_peptide_2|421_aa
MQGKEARGRNQGNVLPGGSGHVREGDSYEKELEAQKLLMGSAVEEACIYKSERQNMVQAS
GHRRSTRGSKMVSWSVIAKIQEILQRKMVREFLAEFMSTYVMMVFGLGSVAHMVLNKKYG
SYLGVNLGFGFGVTMGVHVAGRISGAHMNAAVTFANCALGRVPWRKFPVYVLGQFLGSFL
AAATIYSLFYRRSQQGVPPDRQDKNSGWRLYRDVSLLVGLGLGHCRGPVAWGGAQAWLTG
MLQLCLFAITDQENNPALPGTEALVIGILVVIIGVSLGMNTGYAINPSRDLPPRIFTFIA
GWGKQVFSNGENWWWVPVVAPLLGAYLGGIIYLVFIGSTIPREPLKLEDSVAYEDHGITV
LPKMGSHEPTISPLTPVSELQEELYKCSNSKAVLRQFQGQFTALVKDTDLRGISDHRLFA
E

>gi568815589r:33285156_33487065|GENSCAN_predicted_CDS_2|1266_bp
atgcagggcaaagaagcacgtggccgcaaccaagggaacgtgttgcctggagggtcaggc
catgtgagagagggggatagttacgagaaagaattagaggcccagaaacttctaatgggg
tcagccgtggaagaagcctgcatctacaaatctgaaagacaaaacatggttcaagcatcc
gggcacaggcggtccacccgtggctccaaaatggtctcctggtccgtgatagcaaagatc
caggaaatactgcagaggaagatggtgcgagagttcctggccgagttcatgagcacatat
gtcatgatggtattcggccttggttccgtggcccatatggttctaaataaaaaatatggg
agctaccttggtgtcaacttgggttttggcttcggagtcaccatgggagtgcacgtggca
ggccgcatctctggagcccacatgaacgcagctgtgacctttgctaactgtgcgctgggc
cgcgtgccctggaggaagtttccggtctatgtgctggggcagttcctgggctccttcctg
gcggctgccaccatctacagtctcttctacagacggagccagcagggagtccctccggat
agacaggacaagaactctggatggagactgtaccgagacgtgtctctgctggtgggcttg
ggtctggggcactgccgaggtcctgtggcttggggaggggcccaggcgtggctgaccggg
atgctccagctgtgtctcttcgccatcacggaccaggagaacaacccagcactgccagga
acagaggcgctggtgataggcatcctcgtggtcatcatcggggtgtcccttggcatgaac
acaggatatgccatcaacccgtcccgggacctgcccccccgcatcttcaccttcattgct
ggttggggcaaacaggtcttcagcaatggggagaactggtggtgggtgccagtggtggca
ccacttctgggtgcctatctaggtggcatcatctacctggtcttcattggctccaccatc
ccacgggagcccctgaaattggaggattctgtggcgtatgaagaccacgggataaccgta
ttgcccaagatgggatctcatgaacccacgatctctcccctcacccccgtctctgaactc
caagaggagctgtacaaatgctccaattccaaggcagttttaagacagtttcaggggcaa
ttcacagctcttgtcaaggacacagacctgagaggaatttcagatcaccggttgtttgct
gagtga

>gi568815589r:33285156_33487065|GENSCAN_predicted_peptide_3|1471_aa
XHELLHLVKKGTLDSARVEDLACDSLQLPHCGLRTVLSSPENPSALETSGLVRRTVMDCT
TTIPVCGPGDGDPCFNNSLWARICVQFCAPRCSGGHTVPLLERSSKALWDERHRGADGPT
AVGEKVMEPALEGTGKEGKKASSRKRTLAEPPAKGLLQPVKLSRAELYKEPTNEELNRLR
ETEILFHSSLLRLQVEELLKEVRLSEKKKDRIDAFLREVNQRVVRVPSVPETELTDQAWL
PAGVRVPLHQVPYAVKGCFRFLPPAQVTVVGSYLLGTCIRPDINVDVALTMPREILQDKD
GLNQRYFRKRALYLAHLAHHLAQDPLFGSVCFSYTNGCHLKPSLLLRPRGKDERLVTVRL
HPCPPPDFFRPCRLLPTKNNVRSAWYRGQSPAGDGSPEPPTPRYNTWVLQDTVLESHLQL
LSTILSSAQGLKDGVALLKVWLRQRELDKGQGGFTGFLVSMLVVFLVSTRKIHTTMSGYQ
VLRSVLQFLATTDLTVNGISLCLSSDPSLPALADFHQAFSVVFLDSSGHLNLCADVTAST
YHQVQHEARLSMMLLDSRADDGFHLLLMTPKPMIRAFDHVLHLRPLSRLQAACHRLKLWP
ELQDNGGDYVSAALGPLTTLLEQGLGARLNLLAHSRPPVPEAAKFRQFWGSRSELRRFQD
GAIREAVVWEAASMSQKRLIPHQVVTHLLALHADIPETCVHYVGGPLDALIQGLKETSST
GEEALVAAVRCYDDLSRLLWGLEGLPLTVSAVQGAHPVLRYTEVFPPTPVRPAFSFYETL
RERSSLLPRLDKPCPAYVEPMTVVCHLEGSGQWPQDAEAVQRVRAAFQLRLAELLTQQHG
LQCRATATHTDVLKDGFVFRIRVAYQREPQILKEVQSPEGMISLRDTAASLRLERDTRQL
PLLTSALHGLQQQHPAFSGVARLAKRWVGFLRFLFLVSTFDWKNNPLFVNLNNELTVEEQ
VEIRSGFLAARAQLPVMVIVTPQDRKNSVWTQDGPSAQILQQLVVLAAEALPMLEKQLMD
PRGPGDIRTVFRPPLDIYDVLIRLSPRHIPRHRQAVDSPAASFCRGLLSQPGPSSLMPVL
GYDPPQLYLTQLREAFGDLALFFYDQHGGEVIGVLWKPTSFQPQPFKASSTKGRMVMSRG
GELVMVPNVEAILEDFAVLGEGLVQTVEARSESAAACPAMGRQKELVSRCGEMLHIRYRL
LRQALAECLGTLILVMFGCGSVAQVVLSRGTHGGFLTINLAFGFAVTLGILIAGQVSGAH
LNPAVTFAMCFLAREPWIKLPIYTLAQTLGAFLGAGIVFGLYYDAIWHFADNQLFVSGPN
GTAGIFATYPSGHLDMINGFFDQFIGTASLIVCVLAIVDPYNNPVPRGLEAFTVGLVVLV
IGTSMGFNSGYAVNPARDFGPRLFTALAGWGSAVFTTGQHWWWVPIVSPLLGSIAGVFVY
QLMIGCHLEQPPPSNEEENVKLAHVKHKEQI

>gi568815589r:33285156_33487065|GENSCAN_predicted_CDS_3|4416_bp
nngcatgagctactgcacctggtcaagaaaggcactttagacagtgcccgagttgaggat
ttggcctgtgactcgctgcagttgccacactgtggccttagaacagtcttatccagtcct
gaaaaccccagtgccttggaaacatcaggactggtcagaaggacagtcatggactgtacc
acgaccataccggtctgtggcccaggggatggagacccctgctttaacaatagcctttgg
gccagaatttgtgtccagttctgtgctccccgctgtagcggagggcatacggtgcctctc
ctggagcgctccagtaaggctctctgggatgagaggcatcgtggagcggatgggcccacg
gctgtaggggaaaaggtgatggaaccagccctggaaggcacaggcaaagaggggaagaaa
gcatcctccaggaagcgtacattggctgaacctccagcgaagggcctcctgcagccagtg
aagctcagcagggcagaactgtacaaggagcctaccaatgaggagcttaatcgccttcgg
gagactgagatcttgttccactccagcttgcttcgtttacaggtagaggagctactaaag
gaagtaaggctgtcagagaagaagaaggatcggattgatgccttcctacgggaggtcaac
cagcgggttgtgagggtgccctcagtccctgagacagagctcactgaccaggcatggctc
ccagctggggttcgagtgcccctccaccaagtgccctatgccgtgaagggctgtttccgc
ttcctgcccccagcccaggttactgttgtgggcagctaccttctgggcacctgcatccga
ccagacatcaatgtggatgtggcactgaccatgcccagggaaatcctacaggacaaggac
gggctgaaccagcgctacttccgcaagcgtgccctctacctggcccacttggctcaccac
ctggcccaggaccccctctttggcagtgtttgcttctcctacacaaatggctgccacctg
aaaccctcactgttgctgcggccgcgtggaaaggatgagcgcctggtcactgtacgtctg
catccgtgccctccacctgacttcttccgcccgtgccgcttgctgccaaccaagaacaat
gtgcgctctgcctggtaccgagggcagagtcctgcaggggatggtagcccagagcctcct
accccccgctataacacatgggtcctgcaagatacagttctcgagtcccatttgcagctg
ctgtcaaccattctgagttcagcccagggcctgaaggatggcgtggcacttctgaaggtc
tggctgcggcagcgggagctggacaagggccagggtgggtttactgggttccttgtctcc
atgctggttgtcttccttgtgtctacacgcaagatccataccaccatgagtggctaccag
gtcctgagaagtgtcttgcagtttctggccactacagacctgacagtcaacgggatcagt
ttatgtctcagctcagatccctctttgccggccctggctgacttccaccaggccttctcc
gttgtcttcctggattcctcaggccatctcaacctctgtgctgatgtcactgcctctact
taccaccaggtacagcatgaggcacggctgtctatgatgttgctggacagcagagctgac
gacgggttccacctgctgttgatgactcccaaacccatgatccgggcttttgaccatgtc
ctgcatctccgtccactgagtcgcctgcaggcagcgtgccaccggctgaagctctggcca
gagctgcaggacaatggtggggactatgtctcagctgctttgggccccctgaccaccctc
ctggagcagggcctgggggctcggctgaacctgctggctcactctcgacccccagtccca
gaggctgctaaattccgccagttctggggatcccgctcggagcttcggcgtttccaggac
ggagccattcgggaagctgtggtctgggaggcagcctctatgtcccagaagcgccttatt
ccccaccaggtggtcacccacctcttggcactccatgctgacatcccagaaacctgtgtc
cactatgtggggggccccctggatgcacttatccaaggcctgaaagagacctccagcaca
ggtgaggaggccctggtagcggcggtacgttgctacgacgacctcagtcgcctactgtgg
gggctagagggtctcccactgaccgtgtctgctgttcagggagctcacccagtgctgcgc
tacacagaggtgttcccaccaactccagtccgtccagccttctccttctatgagactctg
cgggagcggtcctcactgctgccccggctcgataagccctgtccggcctacgtggagccc
atgaccgtggtttgtcacctggagggcagtggccagtggccacaggacgctgaggccgtg
cagcgggtccgagctgccttccagctgcgcctggcagagctgttgacacaacagcatggt
ctgcagtgccgtgccactgccacgcacacggatgtccttaaggatggatttgtgtttcgg
attcgcgtggcctatcagcgggagccccagatcctgaaggaggtgcagagcccagagggg
atgatctcgctgagggacacagctgcctccctccgccttgagagagacacaaggcagttg
ccactgctcaccagtgccctgcacggactgcagcagcagcacccagccttctctggtgtg
gcacggctggccaagcggtgggttggcttccttcgattccttttcttggtatcaacgttt
gattggaagaacaaccccctctttgtcaacctcaataatgagctcactgtggaggagcag
gtggagatccgcagtggcttcctggcagctcgggcacagctccccgtcatggtcattgtt
accccccaagaccgcaaaaactctgtgtggacacaggatggaccctcagcccagatcctg
cagcagcttgtggtcctggcagctgaagccctgcccatgttagagaagcagctcatggat
ccccggggacctggggacatcaggacagtgttccggccgcccttggacatttacgacgtg
ctgattcgcctgtctcctcgccatatcccgcggcaccgccaggctgtggactcgccagct
gcctccttctgccggggcctgctcagccagccggggccctcatccctgatgcccgtgctg
ggctatgatcctcctcagctctatctgacgcagctcagggaggcctttggggatctggcc
cttttcttctatgaccagcatggtggagaggtgattggtgtcctctggaagcccaccagc
ttccagccgcagcccttcaaggcctccagcacaaaggggcgcatggtgatgtctcgaggt
ggggagctagtaatggtgcccaatgttgaagcaatcctggaggactttgctgtgctgggt
gaaggcctggtgcagactgtggaggcccgaagtgagagcgccgccgcctgccccgccatg
ggtcgacagaaggagctggtgtcccgctgcggggagatgctccacatccgctaccggctg
ctccgacaggcgctggccgagtgcctggggaccctcatcctggtgatgtttggctgtggc
tccgtggcccaggttgtgctcagccggggcacccacggtggtttcctcaccatcaacctg
gcctttggctttgctgtcactctgggcatcctcatcgctggccaggtctctggggcccac
ctgaaccctgccgtgacctttgccatgtgcttcctggctcgtgagccctggatcaagctg
cccatctacaccctggcacagacgctgggagccttcttgggtgctggaatagtttttggg
ctgtattatgatgcaatctggcacttcgccgacaaccagctttttgtttcgggccccaat
ggcacagccggcatctttgctacctacccctctggacacttggatatgatcaatggcttc
tttgaccagttcataggcacagcctcccttatcgtgtgtgtgctggccattgttgacccc
tacaacaaccccgtcccccgaggcctggaggccttcaccgtgggcctggtggtcctggtc
attggcacctccatgggcttcaactccggctatgccgtcaaccctgcccgggactttggc
ccccgcctttttacagcccttgcgggctggggctctgcagtcttcacgaccggccagcat
tggtggtgggtgcccatcgtgtccccactcctgggctccattgcgggtgtcttcgtgtac
cagctgatgatcggctgccacctggagcagcccccaccctccaacgaggaagagaatgtg
aagctggcccatgtgaagcacaaggagcagatctga