GENSCAN 1.0 Date run: 6-Nov-116 Time: 00:42:40 Sequence gi568815589r:19016251_19226310 : 210060 bp : 43.38% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Init + 10798 11104 307 0 1 79 39 465 0.350 38.16 1.02 Intr + 11118 11301 184 1 1 -50 17 197 0.274 -2.35 1.03 Intr + 11306 11564 259 2 1 19 86 472 0.671 37.57 1.04 Intr + 11619 11685 67 2 1 42 37 83 0.992 -2.92 1.05 Term + 11730 11884 155 1 2 22 49 303 0.990 17.88 1.06 PlyA + 11925 11930 6 1.05 2.00 Prom + 22035 22074 40 -2.46 2.01 Init + 24987 25310 324 2 0 74 46 86 0.081 0.33 2.02 Term + 33050 34351 1302 1 0 17 42 1337 0.227 113.60 2.03 PlyA + 34752 34757 6 1.05 3.08 PlyA - 35746 35741 6 1.05 3.07 Term - 42751 41700 1052 2 2 53 36 240 0.494 7.60 3.06 Intr - 43973 43838 136 2 1 120 80 17 0.913 4.24 3.05 Intr - 46943 46758 186 2 0 102 78 47 0.744 4.99 3.04 Intr - 66793 66623 171 1 0 96 115 32 0.957 6.84 3.03 Intr - 70532 70484 49 1 1 61 100 51 0.263 2.28 3.02 Intr - 86421 86274 148 1 1 115 56 163 0.452 15.09 3.01 Init - 86797 86791 7 1 1 80 80 0 0.868 -0.41 3.00 Prom - 89304 89265 40 -4.46 4.10 PlyA - 90391 90386 6 1.05 4.09 Term - 92497 92363 135 1 0 85 36 121 0.916 4.62 4.08 Intr - 100399 100109 291 1 0 42 82 297 0.519 21.83 4.07 Intr - 102205 102071 135 1 0 61 94 110 0.998 9.66 4.06 Intr - 103581 103400 182 1 2 79 105 33 0.972 3.69 4.05 Intr - 104915 104630 286 2 1 92 61 271 0.911 21.71 4.04 Intr - 107397 107315 83 1 2 55 99 29 0.521 0.06 4.03 Intr - 110059 109864 196 1 1 64 87 277 0.994 24.19 4.02 Intr - 111221 111169 53 0 2 27 109 81 0.541 2.73 4.01 Init - 184796 184637 160 2 1 74 32 241 0.265 17.09 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815589r:19016251_19226310|GENSCAN_predicted_peptide_1|323_aa MKDKIKENSEKINVNKTLVYLVSNIIELLDVDPNDQEEDGPNIDLDSQRKDKCAVIKTST RQTYFLPVIGLVDVEKLKPGDLVGVNKDSYPILETLPRVRLAEVDERPTEQYSDTGGLDK QIQELVEATVLSMNHKEKFENLRIQHPKGVLAPRDGEDPPGLGLAQTKATFLKLTGPQLV QMFTGDGAKLVRDAFALAKEKAPSIIFTDELDAIGTKHFDSEKSGDREVQRTMLELLNQL DGFQPNTQVKGGLDRKIECLGQNHADPLPKDEHDFNGAQCKAVSVEAGMIALRRGATELT HEDYMEGILEVQAKKKANLQYYA >gi568815589r:19016251_19226310|GENSCAN_predicted_CDS_1|972_bp atgaaggacaagatcaaagagaacagtgagaaaatcaatgtgaacaaaaccctggtgtac cttgtctccaacatcatcgagctcctggatgttgatcccaatgatcaagaggaggatggt ccaaatattgacctggactcccagaggaaggacaagtgtgctgtgatcaaaacctctaca cgacagacatacttcctacctgtgattggattggtggatgttgaaaagctaaagccagga gacctggtgggtgtgaacaaagactcctatccaatcctggagacactgcccagagtacga ctcgcggaggtggatgagagacccacggagcaatacagtgacactgggggcttggacaag cagatccaggaactggtggaggccactgtcttgtcaatgaaccacaaggagaagtttgag aacttgcggatccaacatccaaaaggggtgctggcccccagggacggagaagaccctcct ggcctgggcctggcacagactaaggccaccttcctaaagctgactggcccccagctggtg cagatgttcactggagatggtgccaagctagtccgggatgccttcgccctggccaaggag aaagcgccctccatcatcttcactgatgagctggatgccataggcaccaagcactttgac agcgagaagtccggggaccgagaggtgcagaggacgatgctggagcttctgaaccagctg gatggcttccagcccaacacccaagttaagggcggcctggaccgcaagatcgagtgcctg ggccagaatcatgcagatccactcccaaaagatgaacatgacttcaacggggcccagtgc aaggctgtgtctgtggaggcgggtatgatcgcactgcgcaggggtgccacggagctcacc cacgaggactacatggaaggcatcctggaggtccaggccaagaagaaagccaacctacag tactacgcctag >gi568815589r:19016251_19226310|GENSCAN_predicted_peptide_2|541_aa MEVKELYNENYKTLMKETEEDTKKWKNIPCTWIGKINFVKMFMLPKAIYRFNEILMKVPI TFCAEIEKTILKCIWNHKRLRIAKAILSKKNKIGGITLPDLQLYYRVMVSLEQRLFKARR ARRAERGSSREIAAGSGWWRGRSGSLPESERISRAVATDSRGRSHLSKSQPVRGLSSPGF ALSTLLPAQLRGGAERGAACESPAAPDPSLGAACRPRPQAQSAVPRRVMPNTAMKKKVLL MGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMEN YFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLV QEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLR NFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQSM EVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKHSLLM R >gi568815589r:19016251_19226310|GENSCAN_predicted_CDS_2|1626_bp atggaagtgaaagagctctacaatgaaaactataaaacactgatgaaagaaacagaagag gacacaaaaaagtggaaaaatattccatgtacatggattggaaaaatcaattttgttaaa atgttcatgctacccaaagcaatctacagatttaatgaaatccttatgaaagtaccaata acattctgcgcagaaatagaaaaaacaatcctaaaatgtatatggaaccacaaaagattg agaatagccaaagctatcctgagcaaaaagaacaaaattggaggaatcacattacctgac ctccagttatactacagagttatggtttcattagagcagcggcttttcaaggctcgtcgg gcacggagggcggagcgagggagctctcgcgagatcgccgccggaagtgggtggtggcgg ggacgcagcggctccctcccggaaagcgagcgtatctcccgagccgttgccactgacagc cgcgggcgctcccatctgagtaagagccagcccgtccgcggcctctccagccccgggttc gcgctctcgactctcctgcctgcccagctgcgcggcggagcggagcgaggcgcggcctgc gagtccccggcagcccccgacccctccctcggcgctgcgtgtaggccgcgccctcaggcc cagtccgcggtgccccggcgggtgatgccaaatacagccatgaagaaaaaggtgctgctg atggggaagagcgggtcggggaagaccagcatgaggtcgataatcttcgccaattacatt gctcgcgacacccggcgcctgggggccaccattgacgtggaacactcccacgtccgattc ctagggaacctggtgctgaacctgtgggactgtggcggtcaggacaccttcatggaaaat tacttcaccagccagcgagacaatatcttccgtaacgtggaagttttgatttacgtgttt gacgtggagagccgcgaactggaaaaggacatgcattattaccagtcgtgtctggaggcc atcctccagaactctcctgacgccaaaatcttctgcctggtgcacaaaatggatctggtt caggaggatcagcgtgacctgatttttaaagagcgagaggaagacctgaggcgtctgtct cgcccgctggagtgtgcttgttttcgaacgtccatctgggatgagacgctctacaaagcc tggtccagcatcgtctaccagctgattcccaacgttcagcagctggagatgaacctcagg aattttgcccaaatcattgaggccgatgaagttctgctgttcgaaagagctacattcttg gttatttcccactaccagtgcaaagagcagcgcgacgtccaccggtttgagaagatcagc aacatcatcaaacagttcaagctgagctgcagtaaattggccgcttccttccagagcatg gaagttaggaattccaacttcgctgctttcatcgacatcttcacctcaaatacgtacgtg atggtggtcatgtcagatccgtcgatcccttctgcggccactctgatcaacattcgcaat gcccggaaacactttgagaagctggagagagtggatggccccaagcacagtctccttatg cgttga >gi568815589r:19016251_19226310|GENSCAN_predicted_peptide_3|582_aa MPATVPTARMSSASVTAFEKEHLWMYLQALGFEPGPATIACGKIVSHTHLGVMEPYDDHS NMEEKIQKVRSLWASVNETLMFLEKEREVVSSVLSLVNQYALDGTNVAINIPRLLLDKIE KQMFQDTKMGTPKEKNEAISKKIPEFEVENSPLSDVAKNTESSAFGGSLPAKKSDPFQKE QDHLVEEVARAVLSDSPQLSEGKEIKLEELIDSLGSNPFLTRNQIPRTPENLITEIRSSW RKAIEMEENRTKEPIQMDAEHREVLPESLPVLHNQREFSMADFLLETTVSDFGQSHLTEE KVISDCECVPQKHVLTSHIDEPPTQNQSDLLNKKVICKQDLECLAFTKLSETSRMETFSP AVGNRIDVMGGSEEEFMKILDHLEVSCNKPSTNKTMLWNSFQISSGISSKSFKDNDFGIL HETLPEEVGHLSFNSSSSSEANFKLEPNSPMHGGTLLEDVVGGRQTTPESDFNLQALRSR YEALKKSLSKKREESYLSNSQTPERHKPELSPTPQNVQTDDTLNFLDTCDLHTEHIKPSL RTSIGERKRSLSPLIKFSPVEQRLRTTIACSLGELPNLKGKV >gi568815589r:19016251_19226310|GENSCAN_predicted_CDS_3|1749_bp atgcccgccaccgtgcctaccgcgaggatgagctcggcctcggtcaccgctttcgagaag gagcatctctggatgtatctgcaggcgctcggcttcgagccaggcccggcaaccattgcc tgcggaaagatcgtgtcgcacacgcacctcggagtaatggaaccctatgatgaccacagt aatatggaagaaaaaattcaaaaggttcggtctttgtgggcttcagtgaatgaaacgctc atgtttttggaaaaagagagagaagttgttagttcggtccttagtcttgttaaccaatat gctttagatggaactaatgttgctattaatattccaaggctcttacttgacaaaattgag aaacaaatgtttcaggacacaaagatgggaactcccaaagaaaaaaatgaagcaatttct aagaaaataccagaatttgaagtggaaaattctccattatcagatgttgcaaagaataca gagagtagtgcatttggagggtctttgccagctaaaaaaagtgatccatttcaaaaagag caagatcatctggtagaagaggttgccagagcagttttatctgattcaccacagctctct gaaggaaaagaaataaaattagaggaactaattgactctctgggttctaaccccttctta acaaggaatcagattccccgtactccagaaaacttgataactgaaattaggagctcatgg agaaaagctattgaaatggaagaaaacagaactaaagaaccaattcaaatggatgctgaa catagagaagtattgccagaatcattacctgtgttgcacaatcaaagagaatttagcatg gctgattttctcttagaaaccactgtatcagattttggccagtctcatttgactgaagag aaagttatttcagattgcgagtgtgtgcctcagaaacatgtgctgaccagtcacatagat gaaccaccaacacaaaatcagtcagatttgttaaataagaaagtaatttgcaagcaagat ttggaatgtttagccttcaccaagctttcagaaactagccgaatggagacattctcccct gctgtcggcaataggatagatgtgatgggtggcagtgaagaggagtttatgaaaatattg gaccacttagaagtttcttgtaacaaaccttccacaaataaaactatgttgtggaattct tttcagatatcaagtggaattagttctaagagttttaaagataatgattttggcatatta cacgaaactctcccggaagaagttggtcatctaagttttaatagttccagtagttcagag gccaattttaaactggagccaaatagtcctatgcatggtggcactcttctagaagatgtt gtgggagggagacagactactccagaatcagactttaatttacaggctcttcgcagtaga tacgaggctctgaagaaatctctttccaagaaaagggaagaatcttacctctcgaattcc caaacacccgaaagacacaaaccagaattgagccctactccccaaaatgtacaaacagat gatacgcttaactttttggacacctgtgatttgcatactgagcatataaagccatcttta cgcacgtccatcggtgaaagaaaacggtctctttcaccactaattaagttttctccagtg gaacaaagattgagaaccacaatagcatgtagtcttggagaactacctaatttaaagggt aaggtttaa >gi568815589r:19016251_19226310|GENSCAN_predicted_peptide_4|506_aa MKLNISFPATGCQKLIEMDDECKLRTFYEKRTATKVAADTLGEEWKGYVVRISAGVVFGT RLLFAFRCSPSSVVTRVVNLPLVSSTYDLMSSAYLSTKDQYPYLKSVCEMAENGVKTITS VAMTSALPIIQKLEPQIAVANTYACKGLDRIEERLPILNQPSTQIVANAKGAVTGAKDAV TTTVTGAKDSVASTITGVMDKTKGAVTGSVEKTKSVVSGSINTVLGSRMMQLVSSGVENA LTKSELLVEQYLPLTEEELEKEAKKVEGFDLVQKPSYYVRLGSLSTKLHSRAYQQALSRV KEAKQKSQQTISQLHSTVHLIEFARKNVYSANQKIQDAQDKLYLSWVEWKRSIGYDDTDE SHCAEHIESRTLAIARNLTQQLQTTCHTLLSNIQGVPQNIQDQAKHMGVMAGDIYSVFRN AASFKEVSDSLLTSSKGQLQKMKESLDDVMDYLVNNTPLNWLVFDFTTIDLTSETDEIPD IIALEEENGSNNSHANGPVLSGQDVE >gi568815589r:19016251_19226310|GENSCAN_predicted_CDS_4|1521_bp atgaagctgaacatctccttcccagccactggctgccagaaactcattgaaatggatgat gaatgcaaacttcgtactttttatgagaaacgtacggccacaaaagttgctgctgacaca ctgggtgaagaatggaagggttatgtggtccgaatcagtgccggagtcgtcttcgggacg cgcctgctcttcgcctttcgctgcagtccgtcgagtgtggtgactcgggtggtcaacctg cccttggtgagctccacgtatgacctcatgtcctcagcctatctcagtacaaaggaccag tatccctacctgaagtctgtgtgtgagatggcagagaacggtgtgaagaccatcacctcc gtggccatgaccagtgctctgcccatcatccagaagctagagccgcaaattgcagttgcc aatacctatgcctgtaaggggctagacaggattgaggagagactgcctattctgaatcag ccatcaactcagattgttgccaatgccaaaggcgctgtgactggggcaaaagatgctgtg acgactactgtgactggggccaaggattctgtggccagcacgatcacaggggtgatggac aagaccaaaggggcagtgactggcagtgtggagaagaccaagtctgtggtcagtggcagc attaacacagtcttggggagtcggatgatgcagctcgtgagcagtggcgtagaaaatgca ctcaccaaatcagagctgttggtagaacagtacctccctctcactgaggaagaactagaa aaagaagcaaaaaaagttgaaggatttgatctggttcagaagccaagttattatgttaga ctgggatccctgtctaccaagcttcactcccgtgcctaccagcaggctctcagcagggtt aaagaagctaagcaaaaaagccaacagaccatttctcagctccattctactgttcacctg attgaatttgccaggaagaatgtgtatagtgccaatcagaaaattcaggatgctcaggat aagctctacctctcatgggtagagtggaaaaggagcattggatatgatgatactgatgag tcccactgtgctgagcacattgagtcacgtactcttgcaattgcccgcaacctgactcag cagctccagaccacgtgccacaccctcctgtccaacatccaaggtgtaccacagaacatc caagatcaagccaagcacatgggggtgatggcaggcgacatctactcagtgttccgcaat gctgcctcctttaaagaagtgtctgacagcctcctcacttctagcaaggggcagctgcag aaaatgaaggaatctttagatgacgtgatggattatcttgttaacaacacgcccctcaac tggctggtgtttgatttcaccaccatagacttgacatctgagactgatgaaattccagat attatagctttggaagaggagaacggatcaaataattcacatgctaatggccctgtcctc tcagggcaagatgttgaataa