GENSCAN 1.0	Date run:  6-Nov-116	Time: 22:46:27

Sequence gi568815589r:120664562_120888258 : 223697 bp : 43.06% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 PlyA -   1240   1235    6                               1.05
 1.05 Term -  24069  24052   18  0  0  126   38    16 0.297  -1.28
 1.04 Intr -  32422  32326   97  0  1   78   88     7 0.440  -0.29
 1.03 Intr -  33884  33738  147  1  0   63  105    64 0.133   4.95
 1.02 Intr -  49591  49197  395  1  2   68  109   468 0.706  40.35
 1.01 Init -  49773  49648  126  0  0   94   43   281 0.999  22.36
 1.00 Prom -  54430  54391   40                              -3.66

 2.00 Prom +  55991  56030   40                              -8.56
 2.01 Init +  56213  56535  323  1  2   65   70   282 0.297  20.91
 2.02 Intr +  56717  57040  324  2  0   12   51   495 0.220  33.09
 2.03 Intr +  62579  62665   87  2  0   74   97    56 0.124   4.19
 2.04 Intr +  81807  81950  144  0  0  -16   45   158 0.034   0.50
 2.05 Term +  96566  96821  256  2  1   89   49   120 0.377   3.26
 2.06 PlyA +  97077  97082    6                               1.05

 3.07 PlyA -  98997  98992    6                               1.05
 3.06 Term - 100286  99998  289  1  1   96   47   337 0.998  25.25
 3.05 Intr - 106956 106787  170  0  2  106   95    22 0.946   3.44
 3.04 Intr - 108279 108193   87  0  0   70  113    45 0.976   5.37
 3.03 Intr - 111665 111532  134  0  2   33   97   162 0.999  11.96
 3.02 Intr - 113984 113790  195  0  0   81   63   152 0.992  11.39
 3.01 Init - 123310 123208  103  1  1   49  110    69 0.706   5.60
 3.00 Prom - 124363 124324   40                              -8.46

 4.00 Prom + 124518 124557   40                              -4.26
 4.01 Init + 126959 126986   28  1  1   66   65     6 0.424  -3.92
 4.02 Intr + 128791 128928  138  2  0   74   90   191 0.776  18.34
 4.03 Term + 134141 135117  977  0  2   58   45   340 0.359  18.93
 4.04 PlyA + 137188 137193    6                               1.05

 5.10 PlyA - 137576 137571    6                               1.05
 5.09 Term - 153602 153345  258  2  0   83   34   199 0.989   9.55
 5.08 Intr - 156418 156278  141  1  0   84   90    56 0.949   5.95
 5.07 Intr - 156903 156794  110  1  2   27  100    11 0.751  -3.80
 5.06 Intr - 160124 159933  192  0  0   84   77   193 0.764  17.26
 5.05 Intr - 162346 162204  143  0  2   60  110    -4 0.491  -1.00
 5.04 Intr - 164647 164538  110  1  2  104   89    39 0.508   4.68
 5.03 Intr - 167384 167271  114  2  0   65  101    30 0.827   2.64
 5.02 Intr - 168351 168273   79  2  1   69   51    69 0.602   0.85
 5.01 Init - 178348 178176  173  1  2   95   66   318 0.973  27.21
 5.00 Prom - 184266 184227   40                              -1.96

 6.17 PlyA - 184633 184628    6                               1.05
 6.16 Term - 193725 193383  343  2  1   73   42   373 0.932  25.18
 6.15 Intr - 195624 195529   96  2  0   62   99   118 0.901   9.42
 6.14 Intr - 196613 196528   86  2  2  134   64    67 0.917   7.52
 6.13 Intr - 197444 197357   88  1  1  124    8    48 0.871   0.37
 6.12 Intr - 198188 198027  162  1  0   89   52   299 0.955  25.49
 6.11 Intr - 199555 199488   68  1  2  103   90    57 0.992   5.10
 6.10 Intr - 201269 201149  121  1  1   76   95   145 0.999  14.50
 6.09 Intr - 201535 201467   69  0  0   97   81   119 0.998  10.40
 6.08 Intr - 202404 202309   96  2  0  129   94   137 0.999  17.52
 6.07 Intr - 204769 204621  149  1  2  100   61   341 0.999  31.63
 6.06 Intr - 205384 205284  101  2  2  107   88   115 0.999  13.23
 6.05 Intr - 205977 205882   96  1  0   73   92   130 0.918  11.88
 6.04 Intr - 209499 209418   82  0  1  110  101    49 0.991   7.61
 6.03 Intr - 210195 209995  201  0  0   48   59   242 0.717  16.78
 6.02 Intr - 211568 211391  178  1  1   69   15    41 0.219  -5.18
 6.01 Init - 212906 212791  116  2  2   58  -14   250 0.787   9.48

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:120664562_120888258|GENSCAN_predicted_peptide_1|260_aa
MRSLPSLGGLALLCCAAAAAAAAVASAASAGNVTGGGGAAGQGDGSHGPGPEDRAPARHR
PPTPGCDFSSPVPGDHPSLGDCWTLFHHLSGAARPLADHPSGGGTHFDHLSGADQTRADH
PFDDHWPGADHPCSDHRTGAHDSPDPDPRSPQQQQQQRPPHPTCHRGPLFASSRMAQVKL
ELSCVMLPVTAVMVLLRTGLNRRHFKKANAKMEIPKTAIVQFWLVISQIRQRSSCYSTID
PTRFEYVFQLDYILQDLTTF

>gi568815589r:120664562_120888258|GENSCAN_predicted_CDS_1|783_bp
atgaggagcctgccgagcctgggcggcctcgccctgttgtgctgcgccgccgccgccgcc
gccgccgccgtcgcctcagccgcctcggcggggaatgtcaccggtggcggcggggccgcg
gggcagggcgacggctcccacggcccaggccccgaggaccgggcccccgcgcgccaccgt
ccaccgacccctggctgcgacttctccagcccagtccccggagaccacccctctttgggc
gactgctggaccctcttccaccacctttcaggcgccgctcggcccctcgccgaccacccc
tccggcggcggaacgcacttcgaccacctctcaggcgccgaccagacccgcgccgaccac
cctttcgacgaccactggcccggcgccgaccacccctgtagcgaccaccgtaccggcgcc
cacgactccccggaccccgacccccgatctccccagcagcagcaacagcagcgtcctccc
caccccacctgccaccgaggccccctcttcgcctcctccagaatggcccaggtcaagcta
gaattatcctgtgtcatgttgccagttacagcagtaatggtactgctcagaactggacta
aatagaagacattttaaaaaggcaaatgcaaagatggaaatccccaaaacagccattgtc
cagttctggttagttatctctcagatcagacaaaggagcagctgttattcaactatagat
ccaactagattcgaatatgttttccaactagattacatcctacaggatttaactaccttc
taa

>gi568815589r:120664562_120888258|GENSCAN_predicted_peptide_2|377_aa
MQELYSASRPLKGACIADCLQITVETAILIETLFSLGVQEQWSSCSIFSTQEHAVAVFAE
AGMPVFTWKGKMKEGYPWCIEQTLYFKDGPLNMILDDGGDLTNLIHTKWHQVDQDVMIAS
KVAVVAGYGGVGKGCAQALQGFGACIIITETDPISALQAAMEGYEVTTMDEACQEGNIFV
TTTTCVNIILGRHFEQMKDDAILCNTEQFDVEIDVRHGVGDKDGDEDHSFVREMDQKIGK
YNAFKEVWRERRRREPGLPTVLVGQREFRVGVGLADPAFRAAGRLAGPAGPRQSKMSGYS
QIWQCVLLQMIELEETTFLWNDDRIYQKLHTSTQLSWIPVHTMKPEVVMMAFMNLKEAAG
FHHTTVSPKKSNPCKKG

>gi568815589r:120664562_120888258|GENSCAN_predicted_CDS_2|1134_bp
atgcaggagctttactcggcctccaggccactgaagggtgcctgcattgctgactgcctg
caaataactgtggagacggccatcctcattgagacccttttctccctgggtgttcaggag
cagtggtctagctgcagcatcttctccacccaggaacatgcagtggctgtctttgccgag
gctggcatgccagtgttcacctggaagggcaaaatgaaagaggggtacccgtggtgcatt
gaacagacactgtacttcaaggacgggcccctcaacatgattctggatgatgggggtgac
cttaccaacctcatccacaccaaatggcaccaagtggaccaagacgtgatgattgccagc
aaggtagcagtggtagcaggctatggtggtgtgggcaagggctgtgcccaggccttgcag
ggttttggggcctgcataatcatcaccgagactgaccccatcagtgcactgcaggctgcc
atggaaggctatgaggtgaccaccatggacgaggcctgtcaggagggcaacatctttgtc
accaccacaacctgtgtcaatatcatccttggccggcactttgagcagatgaaggatgat
gccatcttatgtaatactgaacaatttgacgtggagatcgatgtcaggcatggtgttggg
gataaagatggagatgaagatcacagctttgtcagggaaatggaccagaaaataggcaaa
tataatgcatttaaggaggtgtggagggagaggcgccggcgggaaccagggctgcccact
gtgcttgtgggccagcgcgagttccgcgtgggcgtgggcttggcagaccccgcattcaga
gcggctggccggctggccggccctgccggccccaggcagtctaaaatgtcaggttacagt
cagatttggcaatgtgtattacttcaaatgattgagctggaggaaactacattcctttgg
aatgatgacagaatctatcagaaacttcacacatccactcagctctcctggatccctgtc
cacaccatgaagcctgaagttgttatgatggcctttatgaacctgaaagaagccgctggc
ttccaccacaccacagtgtcacccaagaaatccaatccttgtaagaaaggatag

>gi568815589r:120664562_120888258|GENSCAN_predicted_peptide_3|325_aa
MKQLEDHEAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTC
AAVKFDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFSVDYNDELDILVSGSADFT
VKVWALSAGTCLNTLTGHTEWVTKVVLQKCKVKSLLHSPGDYILLSADKYEIKIWPIGRE
INCKCLKTLSVSEDRSICLQPRLHFDGKYIVCSSALGLYQWDFASYDILRVIKTPEIANL
ALLGFGDIFALLFDNRYLYIMDLRTESLISRWPLPEYRKSKRGSSFLAGEASWLNGLDGH
NDTGLVFATSMPDHSIHLVLWKEHG

>gi568815589r:120664562_120888258|GENSCAN_predicted_CDS_3|978_bp
atgaagcaactggaggaccatgaagcctttgaaacctcgtcattaattggacacagtgcc
agagtgtatgcactttactacaaagatggacttctctgtacagggtcagatgacttgtct
gcaaagctgtgggatgtgagcacagggcagtgcgtttatggcatccagacccacacttgt
gcagcggtgaagtttgatgaacagaagcttgtgacaggctcctttgacaacactgtggct
tgctgggaatggagttccggagccaggacccagcactttcgggggcacacgggggcggta
tttagcgtggactacaatgatgaactggatatcttggtgagcggctctgcagacttcact
gtgaaagtatgggctttatctgctgggacatgcctgaacacactcaccgggcacacggaa
tgggtcaccaaggtagttttgcagaagtgcaaagtcaagtctctcttgcacagtcctgga
gactacatcctcttaagtgcagacaaatatgagattaagatttggccaattgggagagaa
atcaactgtaagtgcttaaagacattgtctgtctctgaggatagaagtatctgcctgcag
ccaagacttcattttgatggcaaatacattgtctgtagttcagcacttggtctctaccag
tgggactttgccagttatgatattctcagggtcatcaagactcctgagatagcaaacttg
gccttgcttggctttggagatatctttgccctgctgtttgacaaccgctacctgtacatc
atggacttgcggacagagagcctgattagtcgctggcctctgccagagtacaggaaatca
aagagaggctcaagcttcctggcaggcgaagcatcctggctgaatggactggatgggcac
aatgacacgggcttggtctttgccaccagcatgcctgaccacagtattcacctggtgttg
tggaaggagcacggctga

>gi568815589r:120664562_120888258|GENSCAN_predicted_peptide_4|380_aa
MLSTVYSLADPDLRPLLPVRSLTGERLPVLPASSPRVPQLRGSRRKRLHFRSPPGDVKVL
EIKNKARKLNIEPLRSNLSKYYVLSQSEICKGKNIFLLSLIFSSPGNGTRRDLIRKTWGN
VTSVQGHPILTLFALGMPVSVTTQKEINKESCKNNDIIEGIFLDSSENQTLKIIAMIQWA
VAFCPNALFILKVDEETFVNLPSLVDYLLNLKEHLEDIYVGRVLHQVTPNRDPQNRDFVP
LSEYPEKYYPDYCSGEAFIMSQDVARMMYVVFKEVPMMVPADVFVGICAKFIGLIPIHSS
RFSGKRHIRYNRCCYKFIFTSSEIADPEMPLAWKEINDGKECTLFETSYELISCKLLTYL
DSFKRFHMGTIKNNLMYFAD

>gi568815589r:120664562_120888258|GENSCAN_predicted_CDS_4|1143_bp
atgcttagcacagtgtacagtctagcggacccggacctgcggccgctgctcccggtccgc
agcctcacaggggagcggcttccggtgctgcctgcgtcatctccgcgcgtccctcagctc
cgcggctcccggcggaagcggctgcacttccggtccccgcccggagatgtgaaagttctt
gaaattaagaataaggcaagaaaattgaacatcgaacccctaagaagtaatctctccaaa
tattatgtcctgagccagtcagaaatatgtaaagggaagaacatttttttgctgtctctt
atcttcagtagcccaggaaatggaacaagacgggacctcattaggaaaacttggggcaat
gtgaccagtgtccaagggcatcccattctcacactgtttgctctgggaatgcctgtttcg
gtaactacccagaaagagatcaacaaagaatcctgtaagaataatgatataattgaagga
atcttcttggacagttctgagaaccaaaccctgaagatcattgcaatgatacagtgggct
gtggctttctgccctaatgccctgttcattctcaaggtggatgaagagacgtttgtcaat
ctaccaagcttggtagactatcttctcaatctgaaagaacacctagaagatatctatgta
ggaagagttcttcatcaggttacacccaatagagatcctcagaacagagactttgtccct
cttagtgagtacccagaaaaatactacccagattactgcagtggtgaggcctttataatg
tcccaagatgtggctcgaatgatgtatgtggttttcaaagaagtacccatgatggtgcca
gctgatgtgtttgtaggaatttgtgctaagttcattggccttatacccatccacagctca
aggttttctgggaaaaggcacattagatacaacagatgttgctataagttcatttttaca
tcctcagaaattgcagatcctgaaatgcccctagcatggaaggaaattaatgatggaaaa
gaatgtacactgtttgagacatcctatgagctcatttcctgcaaacttctgacgtacctt
gacagctttaaacgttttcacatggggaccataaaaaacaatctcatgtattttgctgat
tag

>gi568815589r:120664562_120888258|GENSCAN_predicted_peptide_5|439_aa
MAAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHRFF
TLDEPNAIVKVTKPTIKTVTLIILIGRIVENSDAVTEILNNAELLKQIVYCIGGENLSVA
KALIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYLA
QEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKVFEMIE
SQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIRCLDAI
SSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTAIANQP
WAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLRLRTYL
SEGPYYVKPVSTTAVEGAE

>gi568815589r:120664562_120888258|GENSCAN_predicted_CDS_5|1320_bp
atggcagcccaggctttggcgctgctgagagaggtagcgaggctggaagcgccgctggag
gagctacgcgcgcttcactccgtgctgcaggcagtgccgctcaacgagcttcgccagcaa
gcggcggagctgcgcctcggcccgctcttctccctgcttaacgagaaccatagattcttt
acactggatgaaccaaatgctattgtaaaggtcactaaaccaacaattaagacagtaact
cttatcatcctgattggaagaattgttgaaaattctgatgctgttactgagattctaaat
aatgctgaattactaaaacaaattgtttattgcattggtggagagaatctatctgtagca
aaagcgctaattatagagatttcttccgtgtcaccagaatctttaaactactgtaccaca
agtggattggtaacccagctcctgagagagctgactggtgaggatgtgttggtcagagcc
acctgtatagaaatggtgacatcactggcatatactcatcatgggcgacaatatcttgct
caagaaggagtaattgaccaaatttctaatataattgttggggcagattcagaccctttc
tctagcttctatctgccaggattcgtgaagttttttggaaacctggctgtcatggatagt
cctcaacagatctgtgagcgttatcctatctttgtggaaaaagtctttgaaatgatagaa
agtcaggaccccactatgattggtgtagctgtagacacagttggaatcttgggatccaat
gttgaaggaaaacaggttttacagaaaacaggaactcgctttgaacgcttgcttatgaga
ataggacatcaatcaaagaatgccccagtggagctaaaaattagatgtttggatgcaatt
tcatctcttctgtacttaccacctgagcagcagactgatgaccttctgaggatgacagaa
tcctggttttcttctttatctcgggatccactggagctcttccgtggcattagtagtcag
cccttccctgaactacactgtgctgccttaaaagtgtttacggccattgcaaaccaaccc
tgggctcagaaacttatgtttaacagtccaggttttgtagaatatgtggtggaccggtct
gtggagcatgacaaagcttcaaaggatgccaaatatgaactagtgaaagcacttgccaat
tccaagacaattgcagaaatctttgggaacccaaattatttgaggctcagaacttacctg
agtgaagggccatactatgtgaaacctgtttccacgacagcagtagaaggagccgaatga

>gi568815589r:120664562_120888258|GENSCAN_predicted_peptide_6|683_aa
MRARGAGGGGRGLAALRSPAAAGSNGEAGAAPANYISGTAPHILSFTHSLAQCRRHHPAQ
SHRSTHTHHTETGTGLSPCEQIVTTPGAQRHGHKEETRCQGKLMENRALDPGTRDSYGAT
SHLPNKGALAKVKNNFKDLMSKLTEGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDN
SKYWVLWKDIQHAGVPGEEPKCNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQ
PLLTPWFCRRCIFALAVRKGGALKKGAIARTLQAVKMVLSYQPEELEWDSPHRTNQQQCY
CYCGGPGEWYLRMLQCYRCRQWFHEACTQCLNEPMMFGDRFYLFFCSVCNQGPEYIERLP
LRWVDVVHLALYNLGVQSKKKYFDFEEILAFVNHHWELLQLGKLTSTPVTDRGPHLLNAL
NSYKSRFLCGKEIKKKKCIFRLRIRVPPNPPGKLLPDKGLLPNENSASSELRKRGKSKPG
LLPHEFQQQKRRVYRRKRSKFLLEDAIPSSDFTSAWSTNHHLASIFDFTLDEIQSLKSAS
SGQTFFSDVDSTDAASTSGSASTSLSYDSRWTVGSRKRKLAAKAYMPLRAKRWAAELDGR
CPSDSSAEGASVPERPDEGIDSHTFESISEDDSSLSHLKSSITNYFGAAGRLACGEKYQV
LARRVTPEGKVQYLVEWEGTTPY

>gi568815589r:120664562_120888258|GENSCAN_predicted_CDS_6|2052_bp
atgcgcgcccgcggggcgggcgggggcgggcgggggctggcggcgctgcggagcccggcg
gccgcgggctccaatggcgaggccggcgcggcccccgctaattacataagcgggacggcc
ccgcacatacttagcttcacacactccctggcacaatgccgtagacatcatcctgcccag
tctcacaggagtacacacacgcaccacacagaaacaggcactggactctctccctgtgaa
cagatagtcacaacaccaggtgcccagcgccatggccacaaggaggagacccgatgtcag
gggaagctgatggagaatcgagctctggatccagggactcgggactcctatggtgccacc
agccacctccccaacaagggggccctggcgaaggtcaagaacaacttcaaagacttgatg
tccaaactgacggagggccagtatgtgctgtgccggtggacagatggcctgtactacctc
gggaagatcaagagggtcagcagctctaagcaaagctgcctcgtgactttcgaagataat
tccaaatactgggtcctatggaaggacatacagcatgccggtgttccaggagaggagccc
aagtgcaacatctgcctagggaagacatcagggccgctgaatgagatcctcatctgcggg
aagtgtggcctgggttaccaccagcagtgccacatccccatagcgggcagtgctgaccag
cccctgctcacaccttggttctgccgacgctgcatcttcgcactggctgtgcggaaaggc
ggcgcgctgaagaagggcgccatcgccaggacgctgcaggccgtgaagatggtgctgtcc
taccagcccgaggagctcgagtgggactcgccccatcgcaccaaccagcagcaatgctac
tgctactgcggcgggcccggagaatggtacctgcggatgctgcaatgttaccggtgcagg
cagtggttccacgaggcctgcacccagtgcctcaatgagcccatgatgtttggagaccgg
ttttacctgttcttctgctccgtgtgtaaccagggcccagagtacatcgagaggctgccc
ctgcgatgggtggatgtggttcacctggccctctataatctgggggtacagagcaagaag
aagtactttgactttgaggagattctggcctttgtcaaccaccactgggagctcctgcag
cttggcaagctcaccagcaccccagtgacagatcgaggaccacatctcctcaacgctctg
aacagttataaaagccggttcctctgcggcaaggagatcaagaagaagaagtgcatcttc
cgcctgcgcatccgcgtcccacccaacccgccagggaagctgctgcctgacaaaggactg
ctgccaaatgagaacagcgcctcctctgagctgcgtaagagaggaaagagcaagcctggt
ttgttgcctcacgaattccagcagcagaaaaggcgagtttatagaagaaaaagatcaaag
tttttgctggaagatgctattcccagtagtgacttcacctcagcctggagcaccaaccac
cacctggctagcatatttgacttcacgctggatgaaattcaaagtttaaaaagtgccagc
tcaggccagaccttcttctcagatgtcgactccaccgacgctgccagcacctctggctct
gcctccaccagcctctcctatgactccagatggacagtgggcagccgaaagaggaagctg
gcagccaaggcatacatgcccctgcgggcaaagcggtgggcagctgagctggatggacgc
tgcccctcggacagcagtgcagagggggcttcagtccccgagcggccagacgaaggcatt
gacagccacacatttgagagcatcagtgaagatgactcatccctgtcccacctcaagtca
tctatcaccaactactttggtgcagctgggcggttggcctgtggggagaagtaccaggtg
ttggctcggagggtcacacctgagggcaaggttcagtacctggtggagtgggaagggacc
accccttactga