GENSCAN 1.0	Date run:  7-Nov-116	Time: 17:39:45

Sequence gi568815588r:80173784_80389423 : 215640 bp : 44.49% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    339    372   34  2  1   90   89    36 0.421   2.09
 1.02 Intr +   5444   5472   29  0  2  101   87     4 0.009  -0.57
 1.03 Term +  18551  18652  102  1  0   72   44   120 0.803   4.28
 1.04 PlyA +  19178  19183    6                               1.05

 2.00 Prom +  22046  22085   40                              -2.56
 2.01 Init +  31829  31979  151  1  1   88   35   127 0.114   6.07
 2.02 Intr +  34426  34448   23  2  2  108  116    13 0.049   3.36
 2.03 Intr +  59881  60000  120  0  0  129  113    97 0.987  16.99
 2.04 Intr +  61315  61460  146  0  2   99  111    17 0.782   4.18
 2.05 Term +  66130  66139   10  1  1  109   47     4 0.164  -3.93
 2.06 PlyA +  68414  68419    6                              -0.45

 3.05 PlyA -  69142  69137    6                               1.05
 3.04 Term -  73837  73436  402  1  0   47   36   568 0.061  42.65
 3.03 Intr -  78816  78610  207  0  0  -50   80   247 0.723   9.37
 3.02 Intr -  79275  79021  255  0  0  -44   53   465 0.520  27.44
 3.01 Init -  79600  79532   69  1  0   56   75   104 0.870   6.95
 3.00 Prom -  80311  80272   40                              -1.46

 4.10 PlyA -  84588  84583    6                               1.05
 4.09 Term - 100100  99998  103  1  1   38   43    90 0.379  -2.75
 4.08 Intr - 100870 100737  134  1  2   18  103   251 0.733  19.04
 4.07 Intr - 101416 101234  183  1  0  125  115   216 0.999  27.98
 4.06 Intr - 102811 102593  219  1  0   71   57   488 0.995  42.50
 4.05 Intr - 106533 106390  144  0  0   78   99   160 0.999  16.58
 4.04 Intr - 107030 106897  134  0  2   89   70   150 0.623  13.66
 4.03 Intr - 110255 110133  123  0  0  116   72   218 0.989  23.56
 4.02 Intr - 111806 111729   78  0  0   91   83    91 0.994   8.42
 4.01 Init - 115640 115550   91  2  1   69  114    53 0.984   6.65
 4.00 Prom - 125958 125919   40                              -4.26

 5.00 Prom + 126957 126996   40                              -4.46
 5.01 Sngl + 131286 131567  282  2  0   88   37   153 0.785   5.69
 5.02 PlyA + 132169 132174    6                               1.05

 6.00 Prom + 132695 132734   40                              -6.36
 6.01 Sngl + 134143 135528 1386  0  0   42   32   458 0.887  31.69
 6.02 PlyA + 135637 135642    6                              -0.45

 7.00 Prom + 135920 135959   40                              -2.46
 7.01 Init + 136357 136489  133  0  1   78   47    90 0.551   4.20
 7.02 Term + 141908 141993   86  0  2  131   55    99 0.992   8.72
 7.03 PlyA + 142403 142408    6                               1.05

 8.00 Prom + 151849 151888   40                              -3.16
 8.01 Init + 154520 154522    3  1  0   93   95     0 0.190   1.20
 8.02 Intr + 177065 177271  207  1  0   73   34    83 0.108   0.67
 8.03 Intr + 182814 182918  105  2  0   81   78    84 0.190   7.11
 8.04 Intr + 188652 188807  156  2  0   95   85    72 0.214   7.81
 8.05 Intr + 189168 189290  123  2  0   96   97   146 0.999  17.08
 8.06 Term + 192905 193168  264  1  0   93   39   194 0.857  10.51
 8.07 PlyA + 193342 193347    6                               1.05

 9.03 PlyA - 194436 194431    6                               1.05
 9.02 Term - 205216 205080  137  2  2   39   43   114 0.539   0.18
 9.01 Init - 210385 210373   13  1  1   70  119     6 0.360   2.34

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  52902  52893   10  0  1   71   82     9 0.854  -1.16


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:80173784_80389423|GENSCAN_predicted_peptide_1|54_aa
MAHCSLDLLGSARLRSACHMITAKGHRTSEKVYTKKGRDQNRRKGTKETDNDEK

>gi568815588r:80173784_80389423|GENSCAN_predicted_CDS_1|165_bp
atggctcactgcagcctggacctcctgggctcagccaggttaagatctgcctgccacatg
attacagcaaagggtcacaggacatctgagaaagtctacaccaagaaagggagagaccaa
aacagaagaaaaggaaccaaagaaacagacaacgatgagaagtag

>gi568815588r:80173784_80389423|GENSCAN_predicted_peptide_2|149_aa
MRTGHGGPARSSSLPAAELLQEVSGSGGPSAAPNPCGAQCRAEPHSPSCRGLIETSYKVV
KVLIVLTPQFLSRDKDQLTKELQQHVKSVTVSCKSPRKVLSHITRLHPPSKGQGENLTHS
VDSIKATIWCQPVWETVEGQRRRVGNCQD

>gi568815588r:80173784_80389423|GENSCAN_predicted_CDS_2|450_bp
atgaggactgggcacggcgggcccgcgaggagcagcagccttccggctgcggagctgctc
caggaagtctcgggctccggaggtccctctgccgcccctaacccctgcggcgcccagtgc
cgcgcagagccgcattcgccctcctgcagggggctcatagaaacatcatacaaggtcgtg
aaggtgttgattgtcctgaccccacagtttctgtcccgtgacaaggaccagctgaccaag
gagctgcagcagcatgtaaagtcagtgacagtctcatgcaagtccccaaggaaggtcctg
agtcacatcacacggctacatccaccttcaaagggtcaaggggagaacctgacacactcg
gtggattccattaaggccaccatatggtgtcagcctgtgtgggagactgtggaggggcag
aggaggagggtagggaattgccaggactga

>gi568815588r:80173784_80389423|GENSCAN_predicted_peptide_3|310_aa
MEIIEVTEEIHVKVVIEGPDATQEVDEVPEDQQLQEVDEVPEDLQLQGVDEVPEDQQLQE
VNEVPEDQQLQKVDEVPEDHQLQEVDEVPEDHQLREVDEVPEDRQLQEELDKAPENNRVE
EVVKFSGDSLVQEVAEFPEDSRVEVVEFPEDSPVEEFVEVPENLQMEGVFEFPDNTQCSA
LRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNI
RRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLGKETEQKYDCGEEILITVLSAMTEE
AAVAIKAMAK

>gi568815588r:80173784_80389423|GENSCAN_predicted_CDS_3|933_bp
atggagattattgaagtaaccgaggagattcatgtgaaggtggttattgaggggccagac
gccacccaggaggtggatgaggtcccagaggaccaacagctgcaggaggtggatgaggtc
ccagaagacctacagctgcagggtgtggatgaagtcccagaggaccaacagctgcaggag
gtgaatgaggtcccggaagaccaacagctgcaaaaggtggatgaggtcccggaggaccac
cagctgcaggaggtggatgaggttccggaggaccaccagcttcgagaggtggatgaggtc
ccggaggaccgacagctgcaggaggagctggataaggccccagagaacaatcgagtggag
gaggtggttaagttttcaggggactctctagtgcaggaggtggctgagttcccagaggac
agtcgagtggaggtggttgaattcccagaggactctccagtggaggagtttgttgaggtc
ccagaaaaccttcagatggagggagtgtttgagttcccagacaacacccagtgctcagca
ttacgtaagaatggctttgtggtgctcaaaggctggccatgtaagatcgtggagatgtct
gcttcgaagactggcaagcacggccacgccaaggtccatctggttggtattgacatcttt
actgggaagaaatatgaagatatctgcccgtcaactcataatatggatgtccccaacatc
agaaggaatgacttccagctgattggcatccaggatgggtacctatcactgctccaggac
agcggggaggtaccagaggaccttcgtctccctgagggagaccttggcaaggagactgag
cagaagtacgactgtggagaagagatcctgatcacggtgctgtctgccatgacagaggag
gcagctgttgcaatcaaggccatggcaaaataa

>gi568815588r:80173784_80389423|GENSCAN_predicted_peptide_4|402_aa
MNGPVDGLCDHSLSEGVFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVC
KTGMVLLCGEITSMAMVDYQRVVRDTIKHIGYDDSAKGSLCFRLGFDFKTCNVLVALEQQ
SPDIAQCVHLDRNEEDVGAGDQGLMFGYATDETEECMPLTIILAHKLNARMADLRRSGLL
PWLRPDSKTQVTVQYMQDNGAVIPVRIHTIVISVQHNEDITLEEMRRALKEQVIRAVVPA
KYLDEDTVYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRS
AAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSQKTERELLDVVHKNF
DLRPGVIVRDLDLKKPIYQKTACYGHFGRSEFPWEVPRKLVF

>gi568815588r:80173784_80389423|GENSCAN_predicted_CDS_4|1209_bp
atgaatggaccggtggatggcttgtgtgaccactctctaagtgaaggagtcttcatgttc
acatcggagtctgtgggagagggacacccggataagatctgtgaccagatcagtgatgca
gtgctggatgcccatctcaagcaagaccccaatgccaaggtggcctgtgagacagtgtgc
aagaccggcatggtgctgctgtgtggtgagatcacctcaatggccatggtggactaccag
cgggtggtgagggacaccatcaagcacatcggctacgatgactcagccaagggctcactt
tgcttccgcctaggctttgacttcaagacttgcaacgtgctggtggctttggagcagcaa
tccccagatattgcccagtgcgtccatctggacagaaatgaggaggatgtgggggcagga
gatcagggtttgatgttcggctatgctaccgacgagacagaggagtgcatgcccctcacc
atcatccttgctcacaagctcaacgcccggatggcagacctcaggcgctccggcctcctc
ccctggctgcggcctgactctaagactcaggtgacagttcagtacatgcaggacaatggc
gcagtcatccctgtgcgcatccacaccatcgtcatctctgtgcagcacaacgaagacatc
acgctggaggagatgcgcagggccctgaaggagcaagtcatcagggccgtggtgccggcc
aagtacctggacgaagacaccgtctaccacctgcagcccagtgggcggtttgtcatcgga
ggtccccagggggatgcgggtgtcactggccgtaagattattgtggacacctatggcggc
tggggggctcatggtggtggggccttctctgggaaggactacaccaaggtagaccgctca
gctgcatatgctgcccgctgggtggccaagtctctggtgaaagcagggctctgccggaga
gtgcttgtccaggtttcctatgccattggtgtggccgagccgctgtccatttccatcttc
acctacggaacctctcagaagacagagcgagagctgctggatgtggtgcataagaacttc
gacctccggccgggcgtcattgtcagggatttggacttgaagaagcccatctaccagaag
acagcatgctacggccatttcggaagaagcgagttcccatgggaggttcccaggaagctt
gtattttag

>gi568815588r:80173784_80389423|GENSCAN_predicted_peptide_5|93_aa
MGRNQSRKAENSKKQSAPSSPKDRSSSPAMEQSRTENDFDELTEVGFRKLVINFFELKED
VQTHRKEAKNFEKRLNEWLTKINSVEKTLNDLM

>gi568815588r:80173784_80389423|GENSCAN_predicted_CDS_5|282_bp
atggggagaaaccagagcagaaaagctgaaaattctaaaaaacagagcgccccttcttct
ccaaaggatcgcagctcctcgccagcaatggaacaaagcaggacagagaatgattttgat
gagttgacagaagtaggcttcagaaagttggtaataaacttctttgagctaaaggaggat
gttcaaacccatcgcaaggaagctaaaaactttgaaaaaagattaaatgaatggctaact
aaaataaacagtgtagagaagaccttaaatgacctgatgtag

>gi568815588r:80173784_80389423|GENSCAN_predicted_peptide_6|461_aa
MIISIDAEKAFNKIQQPFIIKVFNKLGIDGTYLKVIRAIYDKPTANIILNGQKLEAFPLK
TGTRQGCPLSPLLFNITLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIAYLENPVVS
AQNLLKLISNFSKVSAYKINVQKSQAFLDTNNRQTESQIMSELPLTIATKIIKYLGIQLT
KDVKDLFKENYKPLFNEIKEDTNKWKNIPCSWTGKINIMKTAILPKVIYRFSAITIKLPM
TFFTELEKTTLKFIWSQKRARIAKTILSQKNKAGGIMLPDFKLYYKATVTQTAWYWYQNR
DIDQWNRTEASEITPHIYNPLIFDKPDKNKKWGKDSLFNKWCWENWLAICRKLKLDPFLT
PYTKINSRWIKDLNVRPKTIKALEENLGKTIQDIDMGKDFMTKTSKAMATKAKIDKWDLI
KLKSFCTAKETIIRVNRHPTEWDKSFAIYSSDKRLISRIYK

>gi568815588r:80173784_80389423|GENSCAN_predicted_CDS_6|1386_bp
atgattatctcaatagatgcagaaaaggccttcaacaaaattcaacagcccttcataata
aaagttttcaataaactaggtattgatgggacatatctcaaagtaataagagctatttat
gacaaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaa
actggcacaagacaaggatgccctctctcaccactcctattcaacataacgttggaagtt
ctggccagggcaatcaggcaggagaaagaaataaagggtattcagttaggaaaagaggaa
gtcaaattgtccctgtttgcagatgacatgattgcgtatttagaaaaccccgtcgtctca
gcccaaaatctccttaagctgataagcaacttcagcaaagtctcagcatacaaaatcaat
gtgcaaaaatcacaggcattcttagacaccaataacagacaaacagagagccaaatcatg
agtgaactcccactcacaattgctacaaagataataaaatacctaggaatccaacttaca
aaggatgtgaaggacctcttcaaggagaactacaaaccactgttcaatgaaataaaagag
gacacaaacaaatggaagaacattccatgctcatggacaggaaaaatcaatatcatgaaa
acggccatactgcccaaggtaatttatagattcagtgccatcaccatcaaactaccaatg
acattcttcacagaattggaaaaaactactttaaagttcatatggagccaaaaaagagcc
cgcattgccaagacaatcctaagccaaaagaacaaagctggaggcatcatgctacctgac
ttcaaactatactacaaggctacagtaacccaaacagcatggtactggtaccaaaacaga
gatatagaccaatggaacagaacagaggcctcagaaataacaccacacatctacaaccct
ctgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaataaa
tggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttaca
ccttacacaaaaattaattcaagatggattaaagacttaaatgttagacctaaaaccata
aaagccctagaagaaaacctaggcaaaaccattcaggacatagacatgggcaaggacttc
atgactaaaacatcaaaagcaatggcaacaaaagccaaaatagacaaatgggatctaatt
aaactaaagagcttctgcacagcaaaagaaactatcatcagagtgaacaggcatcctaca
gaatgggacaaaagttttgcaatctactcatctgacaaaaggctaatatccagaatctac
aaataa

>gi568815588r:80173784_80389423|GENSCAN_predicted_peptide_7|72_aa
MEYYAAIKKDEFMSFVGTRMKLETIILSKLSQGQKNKHHTSSLIGGLLRSPSLPNEGCSL
PQGAQSHQLPKG

>gi568815588r:80173784_80389423|GENSCAN_predicted_CDS_7|219_bp
atggaatactatgcagccataaagaaggatgagttcatgtcctttgtagggacacggatg
aagctggaaaccatcattctgagcaaactatcacaaggacagaaaaacaaacaccatacg
tcctcactcataggtgggctcctgcgcagcccgagcctccccaacgagggctgctccctg
ccccagggcgcccagtcccatcaactgcccaagggctga

>gi568815588r:80173784_80389423|GENSCAN_predicted_peptide_8|285_aa
MLVLHDPSLQQFPYQYLQLPNHATPILLQLKGLPAPLLHSDIWAQVKRITSSHNQIKWHD
YQYLIFNCYQVSPARRPRPNGQNRLCPPDPAKLGEQIPKTVRAFPAARMETNYLKRCFGN
CLAQALAEVAKVRPSDPIEYLAHWLYHYRKTAKAKEENREKKIHLQEEYDSSLKEMEMTE
MLKQEEYQIQQNCEKCHKELTSETVSTKKTIFMQEDTNPLEKEALKQEFLPGTSSLIPGM
PQQVPPSESAGQIDQNFKMPQEINYKEAFQHEVAHEMPPGSKSPF

>gi568815588r:80173784_80389423|GENSCAN_predicted_CDS_8|858_bp
atgcttgtactccatgacccatcccttcaacaattcccttaccaatatcttcagctccct
aatcatgctaccccaatcctgcttcaattaaaaggtctgcctgctccacttcttcactca
gacatctgggcccaagtgaagagaatcacatcatcacataaccaaatcaaatggcacgat
tatcagtacttgatcttcaactgctaccaagtgagtcctgctcgacgcccaaggcccaac
ggtcagaaccgcctctgcccgccggacccagcgaagctaggggaacaaatcccaaaaaca
gttcgggcctttccggctgccaggatggaaactaactacctgaagaggtgctttggaaat
tgcctggcccaggcactggcagaggtggcgaaggttcggcccagtgacccaatagaatac
ctggctcactggctttatcattacaggaaaacagcaaaagcaaaagaagagaatagggaa
aagaagatccacctgcaggaggaatatgacagtagcctcaaggaaatggaaatgacagaa
atgctgaaacaggaagagtatcagattcaacagaactgtgaaaagtgtcacaaggaactg
acttctgaaactgtttccacgaagaagaccatattcatgcaggaggacacaaaccccctt
gagaaggaggccttgaagcaggaattcctgccaggtacttccagtctgattccaggaatg
cctcaacaggttcctccttcagagtctgctggccagattgaccagaacttcaaaatgcca
caagaaataaattacaaggaggcttttcagcatgaagttgctcatgaaatgcctcctggc
tccaaatctcctttttag

>gi568815588r:80173784_80389423|GENSCAN_predicted_peptide_9|49_aa
MAVSEIAIATPAFSNYHPDQSATINVKARPTTSKKIYNSEKIHMIVSIF

>gi568815588r:80173784_80389423|GENSCAN_predicted_CDS_9|150_bp
atggctgtgtctgaaattgccatagccaccccagccttcagcaactaccaccctgatcag
tcagcaaccatcaatgttaaggcaagacccaccaccagcaaaaagatttacaattcggag
aagattcacatgattgttagcattttttag