GENSCAN 1.0	Date run:  7-Nov-116	Time: 21:36:02

Sequence gi568815588r:80147222_80347683 : 200462 bp : 45.87% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.16 PlyA -    145    140    6                               1.05
 1.15 Term -   1467   1249  219  0  0   32   46   160 0.054   3.24
 1.14 Intr -  10542  10420  123  0  0   55   72   287 0.987  24.58
 1.13 Intr -  10804  10746   59  2  2   65   75    61 0.959   1.10
 1.12 Intr -  11974  11879   96  2  0   73  106   192 0.965  19.48
 1.11 Intr -  14978  14714  265  2  1  134  110   147 0.805  18.59
 1.10 Intr -  16184  16128   57  2  0   91  109    80 0.762   9.48
 1.09 Intr -  16392  16313   80  1  2  110   80    87 0.963   9.37
 1.08 Intr -  16922  16832   91  2  1   72   94   141 0.984  12.67
 1.07 Intr -  18976  18863  114  1  0   30   93   117 0.959   7.04
 1.06 Intr -  19763  19657  107  0  2  128   23   208 0.843  18.23
 1.05 Intr -  20092  20005   88  1  1    2  103   143 0.997   6.74
 1.04 Intr -  22137  21748  390  0  0  122  109   241 0.992  24.52
 1.03 Intr -  23694  23579  116  1  2   72  101   103 0.793  10.17
 1.02 Intr -  25648  25586   63  2  0  111  110    38 0.512   6.99
 1.01 Init -  30880  30727  154  1  1   62   65    92 0.286   2.75
 1.00 Prom -  37349  37310   40                              -5.66

 2.00 Prom +  40230  40269   40                              -4.76
 2.01 Init +  48079  48260  182  0  2   67   77   114 0.716   6.86
 2.02 Intr +  51598  51714  117  1  0   46   84    55 0.399   0.48
 2.03 Intr +  54114  54142   29  0  2  102  105     0 0.586   0.86
 2.04 Intr +  57035  57152  118  0  1   75   84    57 0.551   3.52
 2.05 Term +  60488  60551   64  2  1  101   39    70 0.116   0.76
 2.06 PlyA +  60566  60571    6                               1.05

 3.04 PlyA -  62121  62116    6                               1.05
 3.03 Term -  78274  78045  230  2  2  -39   40   370 0.761  16.29
 3.02 Intr -  86639  86417  223  2  1   59  101    40 0.001   0.10
 3.01 Init -  93234  93178   57  0  0   76  100    29 0.019   4.21
 3.00 Prom -  93399  93360   40                              -6.26

 4.05 PlyA -  93575  93570    6                               1.05
 4.04 Term - 100399  99998  402  1  0   47   36   568 0.061  42.65
 4.03 Intr - 105378 105172  207  0  0  -50   80   247 0.723   9.37
 4.02 Intr - 105837 105583  255  0  0  -44   53   465 0.520  27.44
 4.01 Init - 106162 106094   69  1  0   56   75   104 0.870   6.95
 4.00 Prom - 106873 106834   40                              -1.46

 5.10 PlyA - 111150 111145    6                               1.05
 5.09 Term - 126662 126560  103  1  1   38   43    90 0.379  -2.75
 5.08 Intr - 127432 127299  134  1  2   18  103   251 0.733  19.04
 5.07 Intr - 127978 127796  183  1  0  125  115   216 0.999  27.98
 5.06 Intr - 129373 129155  219  1  0   71   57   488 0.995  42.50
 5.05 Intr - 133095 132952  144  0  0   78   99   160 0.999  16.58
 5.04 Intr - 133592 133459  134  0  2   89   70   150 0.623  13.66
 5.03 Intr - 136817 136695  123  0  0  116   72   218 0.989  23.56
 5.02 Intr - 138368 138291   78  0  0   91   83    91 0.994   8.42
 5.01 Init - 142202 142112   91  2  1   69  114    53 0.984   6.65
 5.00 Prom - 152520 152481   40                              -4.26

 6.00 Prom + 153519 153558   40                              -4.46
 6.01 Sngl + 157848 158129  282  2  0   88   37   153 0.785   5.69
 6.02 PlyA + 158731 158736    6                               1.05

 7.00 Prom + 159257 159296   40                              -6.36
 7.01 Sngl + 160705 162090 1386  0  0   42   32   458 0.887  31.69
 7.02 PlyA + 162199 162204    6                              -0.45

 8.00 Prom + 162482 162521   40                              -2.46
 8.01 Init + 162919 163051  133  0  1   78   47    90 0.551   4.20
 8.02 Term + 168470 168555   86  0  2  131   55    99 0.992   8.72
 8.03 PlyA + 168965 168970    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -   8691   8632   60  0  0   92   47    81 0.922   2.20
S.002 Init -  79464  79455   10  0  1   71   82     9 0.854  -1.16
S.003 Intr +  86443  86562  120  0  0  129  113    97 0.987  16.99


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:80147222_80347683|GENSCAN_predicted_peptide_1|673_aa
MAALGCQERLLQGQPLAVASFEKMQRSQLPEDWTMSRFLNFQRKGGEECCFYLTMSYPGY
PPPPGGYPPAAPGGGPWGGAAYPPPPSMPPIGLDNVATYAGQFNQDYLSGMAANMSGTFG
GANMPNLYPGAPGAGYPPVPPGGFGQPPSAQQPVPPYGMYPPPGGNPPSRMPSYPPYPGA
PVPGQPMPPPGQQPPGAYPGQPPVTYPGQPPVPLPGQQQPVPSYPGYPGSGTVTPAVPPT
QFGSRGTITDAPGFDPLRDAEVLRKAMKGFGTDEQAIIDCLGSRSNKQRQQILLSFKTAY
GKASCGDLIKDLKSELSGNFEKTILALMKTPVLFDIYEIKEAIKGVGTDEACLIEILASR
SNEHIRELNRAYKAEFKKTLEEAIRSDTSGHFQRLLISLSQGNRDESTNVDMSLAQRDAQ
GCYLRPSRHFRGHLVQRLQIGKYFRLKPSEVYQALLGDLGLGSGCGLCHMCVFLSLQELY
AAGENRLGTDESKFNAVLCSRSRAHLVAVFNEYQRMTGRDIEKSICREMSGDLEEGMLAV
VKCLKNTPAFFAERLNKAMRGAGTKDRTLIRIMVSRSETDLLDIRSEYKRMYGKSLYHDI
SDCTGSDLKASTALALTQGLQLPLPGYCLCLLKALGLYNRLVAEPARLVSFPSEQQGPPG
PSWAQRCHLGASN

>gi568815588r:80147222_80347683|GENSCAN_predicted_CDS_1|2022_bp
atggcagccctggggtgccaggaacgacttctccaaggacagccccttgcggtagcctct
tttgaaaaaatgcagaggtcacagttaccagaagactggaccatgagcagatttcttaat
tttcaaagaaaaggaggagaagaatgctgcttctatctaaccatgagctaccctggctat
cccccgcccccaggtggctacccaccagctgcaccaggtggtggtccctggggaggtgct
gcctaccctcctccgcccagcatgccccccatcgggctggataacgtggccacctatgcg
gggcagttcaaccaggactatctctcgggaatggcggccaacatgtctgggacatttgga
ggagccaacatgcccaacctgtaccctggggcccctggggctggctacccaccagtgccc
cctggcggctttgggcagcccccctctgcccagcagcctgttcctccctatgggatgtat
ccacccccaggaggaaacccaccctccaggatgccctcatatccgccatacccaggggcc
cctgtgccgggccagcccatgccaccccccggacagcagcccccaggggcctaccctggg
cagccaccagtgacctaccctggtcagcctccagtgccactccctgggcagcagcagcca
gtgccgagctacccaggatacccggggtctgggactgtcacccccgctgtgcccccaacc
cagtttggaagccgaggcaccatcactgatgctcccggctttgaccccctgcgagatgcc
gaggtcctgcggaaggccatgaaaggcttcgggacggatgagcaggccatcattgactgc
ctggggagtcgctccaacaagcagcggcagcagatcctactttccttcaagacggcttac
ggcaaggcgagctgcggggatttgatcaaagatctgaaatctgaactgtcaggaaacttt
gagaagacaatcttggctctgatgaagaccccagtcctctttgacatttatgagataaag
gaagccatcaagggggttggcactgatgaagcctgcctgattgagatcctcgcttcccgc
agcaatgagcacatccgagaattaaacagagcctacaaagcagaattcaaaaagaccctg
gaagaggccattcgaagcgacacatcagggcacttccagcggctcctcatctctctctct
cagggaaaccgtgatgaaagcacaaacgtggacatgtcactcgcccagagagatgcccag
ggctgctacctgaggcctagcaggcactttagaggccatctagttcagaggttgcaaatt
ggcaaatactttaggctcaaaccttcagaagtttaccaggctctcctgggtgacctgggc
ctggggtctgggtgtggcctgtgccacatgtgcgtcttcctctctctccaggagctgtat
gcggccggggagaaccgcctgggaacagacgagtccaagttcaatgcggttctgtgctcc
cggagccgggcccacctggtagcagttttcaatgagtaccagagaatgacaggccgggac
attgagaagagcatctgccgggagatgtccggggacctggaggagggcatgctggccgtg
gtgaaatgtctcaagaataccccagccttctttgcggagaggctcaacaaggccatgagg
ggggcaggaacaaaggaccggaccctgattcgcatcatggtgtctcgcagcgagaccgac
ctcctggacatcagatcagagtataagcggatgtacggcaagtcgctgtaccacgacatc
tcggactgcactgggtcagacctgaaagccagcacagcactggctctcacccaaggcctg
cagttaccactccctggctactgcctgtgtctgctcaaggccctggggctctacaatcgg
ctggtggcagagccagccaggcttgtgtccttcccttcagaacagcaaggtcctccaggc
cccagctgggcccaaaggtgccatctgggagccagcaactag

>gi568815588r:80147222_80347683|GENSCAN_predicted_peptide_2|169_aa
MSPVSRMQLEVQGPAAHSGGENTFTWEWADPSAAGILSCVKQSGAKSHSHWATEEQHENR
RWRGEDDDEKLNPTAKIRKGMHASIISNKQDAKNKIKYIWLIFLYSAVRGNTLQHKECLE
ERGPVNPLESPTIDCRIKGMRKAMRASEGDREGQLLRKAHFSPWLSECS

>gi568815588r:80147222_80347683|GENSCAN_predicted_CDS_2|510_bp
atgtccccagtcagccgcatgcaactggaagttcaaggacctgcagctcactctggagga
gaaaacaccttcacttgggaatgggctgacccttctgcagctggcatcctaagctgtgtc
aagcagtctggagccaagagtcactcacactgggccactgaggaacagcatgaaaacaga
aggtggcgtggggaagatgacgatgagaaacttaacccaacagcaaaaatcaggaaagga
atgcatgcaagtataataagtaataagcaagatgcaaagaataaaatcaagtatatctgg
ctcatcttcctttactcagctgttcgagggaacaccttgcagcacaaagaatgccttgag
gaaaggggccctgttaatcccctggaatccccaacaattgactgccgcataaaaggaatg
aggaaagcaatgagagccagtgaaggcgaccgcgaaggccagcttcttcgaaaggcccat
ttttctccgtggctgagcgaatgctcctag

>gi568815588r:80147222_80347683|GENSCAN_predicted_peptide_3|169_aa
MSKGESRKCNEENVSKSSKPPYETWGRSTGSYSGAPDPFHLPSLTFLGDLHETVTDFTCC
CSSLVSWSLSRDRNCGVRTINTFTTCRTRAEAYERGRRRRRRRRRRRRRRRRKEEKKKKK
KKKEKEKEKEKEKEKKRKEEEEEEEEEEEEEEEEEEKMYAYGCPSQKNK

>gi568815588r:80147222_80347683|GENSCAN_predicted_CDS_3|510_bp
atgagcaagggtgaaagtagaaaatgcaatgaggaaaatgtatccaagtcttcaaagcca
ccctatgagacatggggcagaagcactgggagctattcaggggcaccagaccccttccat
ctgccctcactcaccttccttggggacttgcatgagactgtcactgactttacatgctgc
tgcagctccttggtcagctggtccttgtcacgggacagaaactgtggggtcaggacaatc
aacaccttcacgacctgcagaacaagggcagaggcttatgaaagaggaagaagaagaagg
agaaggagaaggagaaggagaaggagaagaagaagaaaagaagaaaagaagaagaagaag
aagaagaaggagaaggagaaggagaaggagaaggagaaggagaagaaaagaaaagaagaa
gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaaaaatgtatgca
tatggatgtccaagccagaaaaacaaataa

>gi568815588r:80147222_80347683|GENSCAN_predicted_peptide_4|310_aa
MEIIEVTEEIHVKVVIEGPDATQEVDEVPEDQQLQEVDEVPEDLQLQGVDEVPEDQQLQE
VNEVPEDQQLQKVDEVPEDHQLQEVDEVPEDHQLREVDEVPEDRQLQEELDKAPENNRVE
EVVKFSGDSLVQEVAEFPEDSRVEVVEFPEDSPVEEFVEVPENLQMEGVFEFPDNTQCSA
LRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNI
RRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLGKETEQKYDCGEEILITVLSAMTEE
AAVAIKAMAK

>gi568815588r:80147222_80347683|GENSCAN_predicted_CDS_4|933_bp
atggagattattgaagtaaccgaggagattcatgtgaaggtggttattgaggggccagac
gccacccaggaggtggatgaggtcccagaggaccaacagctgcaggaggtggatgaggtc
ccagaagacctacagctgcagggtgtggatgaagtcccagaggaccaacagctgcaggag
gtgaatgaggtcccggaagaccaacagctgcaaaaggtggatgaggtcccggaggaccac
cagctgcaggaggtggatgaggttccggaggaccaccagcttcgagaggtggatgaggtc
ccggaggaccgacagctgcaggaggagctggataaggccccagagaacaatcgagtggag
gaggtggttaagttttcaggggactctctagtgcaggaggtggctgagttcccagaggac
agtcgagtggaggtggttgaattcccagaggactctccagtggaggagtttgttgaggtc
ccagaaaaccttcagatggagggagtgtttgagttcccagacaacacccagtgctcagca
ttacgtaagaatggctttgtggtgctcaaaggctggccatgtaagatcgtggagatgtct
gcttcgaagactggcaagcacggccacgccaaggtccatctggttggtattgacatcttt
actgggaagaaatatgaagatatctgcccgtcaactcataatatggatgtccccaacatc
agaaggaatgacttccagctgattggcatccaggatgggtacctatcactgctccaggac
agcggggaggtaccagaggaccttcgtctccctgagggagaccttggcaaggagactgag
cagaagtacgactgtggagaagagatcctgatcacggtgctgtctgccatgacagaggag
gcagctgttgcaatcaaggccatggcaaaataa

>gi568815588r:80147222_80347683|GENSCAN_predicted_peptide_5|402_aa
MNGPVDGLCDHSLSEGVFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVC
KTGMVLLCGEITSMAMVDYQRVVRDTIKHIGYDDSAKGSLCFRLGFDFKTCNVLVALEQQ
SPDIAQCVHLDRNEEDVGAGDQGLMFGYATDETEECMPLTIILAHKLNARMADLRRSGLL
PWLRPDSKTQVTVQYMQDNGAVIPVRIHTIVISVQHNEDITLEEMRRALKEQVIRAVVPA
KYLDEDTVYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRS
AAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSQKTERELLDVVHKNF
DLRPGVIVRDLDLKKPIYQKTACYGHFGRSEFPWEVPRKLVF

>gi568815588r:80147222_80347683|GENSCAN_predicted_CDS_5|1209_bp
atgaatggaccggtggatggcttgtgtgaccactctctaagtgaaggagtcttcatgttc
acatcggagtctgtgggagagggacacccggataagatctgtgaccagatcagtgatgca
gtgctggatgcccatctcaagcaagaccccaatgccaaggtggcctgtgagacagtgtgc
aagaccggcatggtgctgctgtgtggtgagatcacctcaatggccatggtggactaccag
cgggtggtgagggacaccatcaagcacatcggctacgatgactcagccaagggctcactt
tgcttccgcctaggctttgacttcaagacttgcaacgtgctggtggctttggagcagcaa
tccccagatattgcccagtgcgtccatctggacagaaatgaggaggatgtgggggcagga
gatcagggtttgatgttcggctatgctaccgacgagacagaggagtgcatgcccctcacc
atcatccttgctcacaagctcaacgcccggatggcagacctcaggcgctccggcctcctc
ccctggctgcggcctgactctaagactcaggtgacagttcagtacatgcaggacaatggc
gcagtcatccctgtgcgcatccacaccatcgtcatctctgtgcagcacaacgaagacatc
acgctggaggagatgcgcagggccctgaaggagcaagtcatcagggccgtggtgccggcc
aagtacctggacgaagacaccgtctaccacctgcagcccagtgggcggtttgtcatcgga
ggtccccagggggatgcgggtgtcactggccgtaagattattgtggacacctatggcggc
tggggggctcatggtggtggggccttctctgggaaggactacaccaaggtagaccgctca
gctgcatatgctgcccgctgggtggccaagtctctggtgaaagcagggctctgccggaga
gtgcttgtccaggtttcctatgccattggtgtggccgagccgctgtccatttccatcttc
acctacggaacctctcagaagacagagcgagagctgctggatgtggtgcataagaacttc
gacctccggccgggcgtcattgtcagggatttggacttgaagaagcccatctaccagaag
acagcatgctacggccatttcggaagaagcgagttcccatgggaggttcccaggaagctt
gtattttag

>gi568815588r:80147222_80347683|GENSCAN_predicted_peptide_6|93_aa
MGRNQSRKAENSKKQSAPSSPKDRSSSPAMEQSRTENDFDELTEVGFRKLVINFFELKED
VQTHRKEAKNFEKRLNEWLTKINSVEKTLNDLM

>gi568815588r:80147222_80347683|GENSCAN_predicted_CDS_6|282_bp
atggggagaaaccagagcagaaaagctgaaaattctaaaaaacagagcgccccttcttct
ccaaaggatcgcagctcctcgccagcaatggaacaaagcaggacagagaatgattttgat
gagttgacagaagtaggcttcagaaagttggtaataaacttctttgagctaaaggaggat
gttcaaacccatcgcaaggaagctaaaaactttgaaaaaagattaaatgaatggctaact
aaaataaacagtgtagagaagaccttaaatgacctgatgtag

>gi568815588r:80147222_80347683|GENSCAN_predicted_peptide_7|461_aa
MIISIDAEKAFNKIQQPFIIKVFNKLGIDGTYLKVIRAIYDKPTANIILNGQKLEAFPLK
TGTRQGCPLSPLLFNITLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIAYLENPVVS
AQNLLKLISNFSKVSAYKINVQKSQAFLDTNNRQTESQIMSELPLTIATKIIKYLGIQLT
KDVKDLFKENYKPLFNEIKEDTNKWKNIPCSWTGKINIMKTAILPKVIYRFSAITIKLPM
TFFTELEKTTLKFIWSQKRARIAKTILSQKNKAGGIMLPDFKLYYKATVTQTAWYWYQNR
DIDQWNRTEASEITPHIYNPLIFDKPDKNKKWGKDSLFNKWCWENWLAICRKLKLDPFLT
PYTKINSRWIKDLNVRPKTIKALEENLGKTIQDIDMGKDFMTKTSKAMATKAKIDKWDLI
KLKSFCTAKETIIRVNRHPTEWDKSFAIYSSDKRLISRIYK

>gi568815588r:80147222_80347683|GENSCAN_predicted_CDS_7|1386_bp
atgattatctcaatagatgcagaaaaggccttcaacaaaattcaacagcccttcataata
aaagttttcaataaactaggtattgatgggacatatctcaaagtaataagagctatttat
gacaaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaa
actggcacaagacaaggatgccctctctcaccactcctattcaacataacgttggaagtt
ctggccagggcaatcaggcaggagaaagaaataaagggtattcagttaggaaaagaggaa
gtcaaattgtccctgtttgcagatgacatgattgcgtatttagaaaaccccgtcgtctca
gcccaaaatctccttaagctgataagcaacttcagcaaagtctcagcatacaaaatcaat
gtgcaaaaatcacaggcattcttagacaccaataacagacaaacagagagccaaatcatg
agtgaactcccactcacaattgctacaaagataataaaatacctaggaatccaacttaca
aaggatgtgaaggacctcttcaaggagaactacaaaccactgttcaatgaaataaaagag
gacacaaacaaatggaagaacattccatgctcatggacaggaaaaatcaatatcatgaaa
acggccatactgcccaaggtaatttatagattcagtgccatcaccatcaaactaccaatg
acattcttcacagaattggaaaaaactactttaaagttcatatggagccaaaaaagagcc
cgcattgccaagacaatcctaagccaaaagaacaaagctggaggcatcatgctacctgac
ttcaaactatactacaaggctacagtaacccaaacagcatggtactggtaccaaaacaga
gatatagaccaatggaacagaacagaggcctcagaaataacaccacacatctacaaccct
ctgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaataaa
tggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttaca
ccttacacaaaaattaattcaagatggattaaagacttaaatgttagacctaaaaccata
aaagccctagaagaaaacctaggcaaaaccattcaggacatagacatgggcaaggacttc
atgactaaaacatcaaaagcaatggcaacaaaagccaaaatagacaaatgggatctaatt
aaactaaagagcttctgcacagcaaaagaaactatcatcagagtgaacaggcatcctaca
gaatgggacaaaagttttgcaatctactcatctgacaaaaggctaatatccagaatctac
aaataa

>gi568815588r:80147222_80347683|GENSCAN_predicted_peptide_8|72_aa
MEYYAAIKKDEFMSFVGTRMKLETIILSKLSQGQKNKHHTSSLIGGLLRSPSLPNEGCSL
PQGAQSHQLPKG

>gi568815588r:80147222_80347683|GENSCAN_predicted_CDS_8|219_bp
atggaatactatgcagccataaagaaggatgagttcatgtcctttgtagggacacggatg
aagctggaaaccatcattctgagcaaactatcacaaggacagaaaaacaaacaccatacg
tcctcactcataggtgggctcctgcgcagcccgagcctccccaacgagggctgctccctg
ccccagggcgcccagtcccatcaactgcccaagggctga