GENSCAN 1.0	Date run:  3-Nov-116	Time: 09:52:11

Sequence gi568815588r:123910152_124146212 : 236061 bp : 48.78% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   4257   4394  138  1  0  136   61    55 0.819   8.04
 1.02 Term +  25568  25962  395  0  2  -83   40  1051 0.903  78.40
 1.03 PlyA +  27577  27582    6                              -0.45

 2.06 PlyA -  27601  27596    6                               1.05
 2.05 Term -  28603  28504  100  0  1   98   43    78 0.406   1.90
 2.04 Intr -  28907  28862   46  0  1   58   84    39 0.235  -2.03
 2.03 Intr -  31696  31540  157  1  1   73   75    74 0.061   4.18
 2.02 Intr -  35816  35757   60  2  0  106   87    -5 0.128   0.13
 2.01 Init -  42169  42125   45  1  0   92   78    69 0.695   6.98
 2.00 Prom -  43265  43226   40                              -5.36

 3.06 PlyA -  45243  45238    6                               1.05
 3.05 Term -  57806  57642  165  2  0   75   42   123 0.355   4.32
 3.04 Intr -  63138  62957  182  1  2   52   61   106 0.161   3.89
 3.03 Intr -  63300  63222   79  0  1   79   68    37 0.291  -0.08
 3.02 Intr -  63619  63498  122  2  2   88   14    85 0.266   1.31
 3.01 Init -  65269  65248   22  1  1   76   81    -4 0.361  -2.87
 3.00 Prom -  66959  66920   40                              -4.26

 4.00 Prom +  72850  72889   40                              -1.76
 4.01 Init +  81452  81683  232  1  1   50   31   286 0.398  15.52
 4.02 Intr +  81845  82141  297  0  0  -59   -7   346 0.503   7.25
 4.03 Intr +  82173  82439  267  1  0   61   82   178 0.409  12.00
 4.04 Intr +  87676  87801  126  2  0  106   60    26 0.017   2.25
 4.05 Term +  98280  98488  209  1  2   40   47   149 0.071   3.50
 4.06 PlyA +  98944  98949    6                               1.05

 5.10 PlyA -  99317  99312    6                              -0.45
 5.09 Term - 100188  99998  191  1  2  103   54   247 0.865  20.41
 5.08 Intr - 100547 100419  129  0  0   59   47    64 0.478   0.07
 5.07 Intr - 102329 102182  148  2  1  110   52   202 0.977  18.61
 5.06 Intr - 111261 111105  157  2  1   81   23   209 0.849  13.71
 5.05 Intr - 120306 120223   84  2  0  100   68    50 0.353   3.14
 5.04 Intr - 128520 128364  157  1  1  108   83   241 0.836  24.67
 5.03 Intr - 132296 132150  147  0  0   87   99   190 0.988  20.21
 5.02 Intr - 134768 134429  340  2  1  149   97   704 0.994  72.45
 5.01 Init - 136061 135516  546  2  0   80   84   202 0.931  13.91
 5.00 Prom - 142034 141995   40                              -4.36

 6.00 Prom + 144888 144927   40                              -7.36
 6.01 Init + 145683 145845  163  2  1   44   49   118 0.261   3.39
 6.02 Term + 146480 146790  311  0  2   57   54   172 0.420   5.92
 6.03 PlyA + 147379 147384    6                               1.05

 7.00 Prom + 161439 161478   40                              -4.66
 7.01 Init + 173736 173772   37  2  1  113   91    -3 0.820   2.68
 7.02 Intr + 174213 174265   53  1  2  116   55    40 0.413   2.13
 7.03 Intr + 176834 176970  137  1  2  -20   90   183 0.577   7.07
 7.04 Intr + 181593 181908  316  0  1   52   44   189 0.654   6.97
 7.05 Intr + 184215 184399  185  2  2   47   22   148 0.013   2.69
 7.06 Intr + 198032 198148  117  2  0   40   32   216 0.157  10.78
 7.07 Intr + 209317 209360   44  1  2   82   51    12 0.023  -5.22
 7.08 Term + 213786 213940  155  1  2   95   54   139 0.825   9.28
 7.09 PlyA + 216453 216458    6                              -0.45

 8.05 PlyA - 216525 216520    6                              -1.75
 8.04 Term - 217731 217611  121  2  1   79   53    93 0.851   2.85
 8.03 Intr - 219248 219089  160  0  1   61   77    73 0.032   2.55
 8.02 Intr - 230016 229913  104  2  2   66  105    62 0.336   5.52
 8.01 Init - 233120 232780  341  2  2   30   58   140 0.185   0.74

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  25350  25443   94  2  1   95  111    15 0.925   5.05


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:123910152_124146212|GENSCAN_predicted_peptide_1|177_aa
XKPVHSTHCCGFKFLQRSPVFQVCVTDSLLDISTQMLPPGPKLHSKDPARNTSIITIIIT
ITIITSIFTIIITTTTSSIFIAIITSVLTIITTTTITTILTIITTTNTSIFTIITTFTII
ITIITSIFTIITIITTTTITSILTIITTTNTSIFTIITITIITTIFTITTTITIIIY

>gi568815588r:123910152_124146212|GENSCAN_predicted_CDS_1|534_bp
nggaagcctgttcattctacccattgctgtggctttaaattcttgcagagaagtcccgtg
ttccaggtctgtgtgactgacagcctccttgacatctccactcagatgctgcctccaggt
cccaaacttcactcgaaagatccagccagaaatacaagcatcatcaccatcatcatcacc
atcaccatcataaccagcatctttaccatcatcatcaccaccaccaccagcagcatcttc
atcgccatcatcaccagcgtcttgaccatcatcaccaccaccaccatcaccaccatcctt
accatcatcaccaccaccaacaccagcatcttcaccatcatcaccacatttaccatcatc
atcaccatcatcaccagcatctttaccatcatcaccatcatcactaccaccaccatcacc
agcatccttaccatcatcaccaccaccaacaccagcatcttcaccatcatcaccatcacc
atcatcaccactatctttaccatcaccaccaccatcaccatcatcatctattga

>gi568815588r:123910152_124146212|GENSCAN_predicted_peptide_2|135_aa
MAGVNHDVITKSEKEGTATLPSVSVDFPLLDISLKMRFREGRWPAQGERENQFFWPHTLA
FELFFKAPPKAEEGESPLGSTGQPSAAGYQEHNVSAPPEEGEGPERIRVALSICKMAAVD
AGQPGSQRAFTILAC

>gi568815588r:123910152_124146212|GENSCAN_predicted_CDS_2|408_bp
atggccggtgtaaatcatgatgtcatcaccaaatcggaaaaggagggaactgctacttta
ccttctgtctctgtggattttcctcttctggacatttcattgaaaatgcggttcagagaa
ggtaggtggcctgctcaaggtgaacgagagaaccagttcttctggcctcatactctagct
tttgagctcttcttcaaagcacccccaaaggcagaggagggggaaagtcctctggggtcc
acagggcagccgtccgctgcaggataccaggaacataatgtgtctgctcctccagaggag
ggagagggaccagagcgtatacgggtggccctgagtatctgcaagatggctgcggtagac
gctggccagccgggcagccagcgggcattcaccattcttgcttgctaa

>gi568815588r:123910152_124146212|GENSCAN_predicted_peptide_3|189_aa
MAPAPASATLHLKELDGAGTHSYIGAAPKSGIHKQFWAYKNQKRIDCTNFCDFSFESFAF
QKAHSVPLTLAGLVDTHGWVRPQSLLHKPEPCKSQGDSAPVGLSASYFPSPHLEENLLGP
ECIQGNKNFREGVHQFISVGFTGVSENSEVHLCTMRLTPVFGSPTQPAGGRLDLGMHRSG
SPETCSLPR

>gi568815588r:123910152_124146212|GENSCAN_predicted_CDS_3|570_bp
atggcaccagcacctgcttctgcgaccttgcacctgaaggagctggatggggctggtacc
cacagctacattggagctgctcccaaatcaggaattcataagcaattctgggcttacaag
aatcaaaagcggattgattgtactaacttttgcgatttcagctttgaaagttttgcattc
cagaaagcccactcagtcccactcaccctggccggcctggtggacacccatggctgggtt
cgcccgcaaagtctgctgcataagcccgagccctgcaaatctcagggagacagcgctccc
gtcgggctgtccgccagctatttcccatccccacacctggaggaaaatctgcttggccct
gagtgtattcaagggaacaagaacttcagggaaggcgtccaccagtttattagcgtgggc
ttcacgggggtatctgagaactcagaagtccacctttgcacgatgaggctgacgcctgtg
tttggttccccgacacagccagcagggggcaggctggacctgggaatgcaccggagcggc
tccccggagacctgcagtttgccgagatga

>gi568815588r:123910152_124146212|GENSCAN_predicted_peptide_4|376_aa
MKTLGVRARLGARGSRSAAGSPAGGRGRGGGGGGGGGGGGGGRYWTRRDERGGGGSGGDS
GPRGDGARDGGRGGSGGVRRTSRCWQPESCLGTAKRFNVRSGYGFTNRNDAKEDVFVHWT
AVKRNNPRKFLRSVRDGETVEFDVVEGEKGAEATNVTGPRAAGVPMKGTVMPPTDVVAPP
PMVAEIPSRGTEPGGEGERAEDSGQRPRRWRPPPFYLRRFVRGPRPPNQQQPIEGTDGVE
PNRQPHWRGTNSREMSGSPRPDSGPGWTPAPSLILVFDHLGLDFAFDLASIACHILQLVT
STRWVRFGQISLLAAAPSAGYREGGDCPCKWEFRTHAPSVAKTALAILALRALCTPSNGL
CVPSLMAERQHQQKDG

>gi568815588r:123910152_124146212|GENSCAN_predicted_CDS_4|1131_bp
atgaagacattgggcgtccgggcgaggctcggggcgcgaggatcgcgcagcgcagcgggt
tcgccagccggggggaggggccggggcggtggcggcggcggcggaggaggcggtggcggc
gggggccggtactggacccggcgggatgagcgaggtggaggcggcagcggtggcgacagc
ggtccccgcggcgacggtgcccgcgacggtggcaggggtggtagcggtggtgtcaggcgg
acaagccggtgctggcaacccgagtcctgcctgggcactgccaaacggttcaacgtccgg
agtggttacggattcaccaacaggaatgacgccaaggaagatgtcttcgttcactggaca
gctgttaaaagaaacaaccccaggaagtttctgcgcagcgttagagatggggagactgtg
gaatttgatgtcgtggaaggagagaagggcgcagaagccactaatgtaactgggcccagg
gcggcgggggtgcccatgaagggcaccgttatgcccccaaccgacgtagttgccccacca
cccatggtggcagagatcccctctcgggggacagaacctggcggcgaaggggagcgggcc
gaagactctgggcagcggcccagacgatggcgccccccacccttctacctacggcggttt
gtgcgaggcccccggccccccaaccagcagcagcctatagagggcactgatggggtagaa
ccaaacagacagccccattggaggggcaccaacagcagggagatgagtgggtccccccgc
ccagattccggcccaggctggacaccagctccaagtctaatccttgtctttgaccatttg
gggcttgactttgcctttgaccttgcctccattgcctgccacatccttcagttagtgaca
agcacaagatgggtcagatttggccagatttccctgctggcggctgctcccagtgccggc
tatagagaaggtggggactgtccctgcaagtgggagttcaggacacacgctccttcagta
gcaaaaacagccctggccatcctggcgctcagagccctctgcacaccttcgaacgggctg
tgtgtcccttctctgatggcagaaagacaacaccagcagaaagacggctga

>gi568815588r:123910152_124146212|GENSCAN_predicted_peptide_5|632_aa
MRHCINCCIQLLPDGAHKQQVNCQGGPHHGHQACPTCKGENKILFRVDSKQMNLLAVLEV
RTEGNENWGGFLRFKKGKRCSLVFGLIIMTLVMASYILSGAHQELLISSPFHYGGFPSNP
SLMDSENPSDTKEHHHQSSVNNISYMKDYPSIKLIINSITTRIEFTTRQLPDLEDLKKQE
LHMFSVIPNKFLPNSKSPCWYEEFSGQNTTDPYLTNSYVLYSKRFRSTFDALRKAFWGHL
AHAHGKHFRLRCLPHFYIIGQPKCGTTDLYDRLRLHPEVKFSAIKEPHWWTRKRFGIVRL
RDGLRDRYPVEDYLDLFDLAAHQIHQGLQASSAKEQSKMNTIIIGEASASTMWDNNAWTF
FYDNSTDGEPPFLTQDFIHAFQPNARLIVMLRDPVERFWKIKNYKGPCEDYCSAVSLLKL
PIDSWLYSDYLYFASSNKSADDFHEKVTEALQLFENCMLDYSLRACVYNNTLNNAMPVRL
QVGLYAVYLLDWLSVFDKQQFLILRLEDHASNVKYTMHKVFQFLNLGRTFLQGRADTHGE
QPTKGNWKGILEVSLRRCIIIKCQLGSPEGPLSEKQEALMTKSPASNARRPEDRNLGPMW
PITQKILRDFYRPFNARLAQVLADEAFAWKTT

>gi568815588r:123910152_124146212|GENSCAN_predicted_CDS_5|1899_bp
atgaggcactgcattaattgctgcatacagctgttacccgacggcgcacacaagcagcag
gtcaactgccaagggggcccccatcacggtcaccaggcgtgccccacgtgcaaaggagaa
aacaaaattctgtttcgtgtggacagtaagcagatgaacttgcttgctgttctcgaagtg
aggactgaagggaacgaaaactggggtgggtttttgcgcttcaaaaaggggaagcgatgt
agcctcgtttttggactgataataatgaccttggtaatggcttcttacatcctttctggg
gcccaccaagagcttctgatctcatcacctttccattacggaggcttccccagcaacccc
agcttgatggacagcgaaaacccaagtgacacaaaggagcatcaccaccaatcctctgta
aataatatttcatacatgaaggactatccaagcattaaattaattatcaacagcatcaca
actaggattgagttcacgaccagacagctcccagacttagaagaccttaagaagcaggag
ttgcatatgttttcagtcatccccaacaaattccttccaaacagtaagagcccctgttgg
tacgaggagttctcggggcagaacaccaccgacccctacctcaccaactcctacgtgctc
tactccaagcgcttccgctccaccttcgacgccctgcgcaaggccttctggggccacctg
gcgcacgcgcacgggaagcacttccgcctgcgctgcctgccgcacttctacatcataggg
cagcccaagtgcgggaccacagacctctatgaccgcctgcggctgcaccctgaggtcaag
ttctccgccatcaaggagccacactggtggacccggaagcgctttggaatcgtccgccta
agagatgggctgcgagaccgctatcccgtggaagattatctggacctctttgacctggcc
gcacaccagatccatcaaggactgcaggccagctctgcaaaggagcagagcaagatgaat
acaatcattatcggggaggccagtgcctccacgatgtgggataataatgcctggacgttc
ttctacgacaacagcacggatggcgagccaccgtttctgacgcaggacttcatccacgcc
tttcagccaaatgccagactgattgtcatgctcagggaccctgtggagagattttggaag
attaagaattacaagggtccttgtgaggactactgtagtgcggtgtctttattgaagctg
cctattgattcctggttgtactcagactatctctactttgcaagttcgaataaatccgcg
gacgacttccatgagaaagtgacagaagcactgcagctgtttgaaaattgcatgcttgat
tattcactgcgcgcctgcgtctacaacaacaccctcaacaacgccatgcctgtgaggctc
caggttgggctctatgctgtgtaccttctggactggctcagcgtttttgacaagcaacag
tttctcattcttcgcctggaagatcatgcatccaacgtcaagtacaccatgcacaaggtc
ttccagtttctgaacctaggccgcacgttcctccaaggacgggctgacacccatggagag
cagcccaccaagggcaattggaagggaatccttgaggtcagccttagacgctgtatcatc
attaaatgccagctgggctcccccgaggggcccttaagtgagaagcaggaggctttgatg
accaagagccccgcatccaatgcacggcgtcccgaggaccggaacctggggcccatgtgg
cccatcacacagaagattctgcgggatttctacaggcccttcaacgctaggctggcgcag
gtcctcgcggatgaggcgtttgcgtggaagacgacgtga

>gi568815588r:123910152_124146212|GENSCAN_predicted_peptide_6|157_aa
MQDSEAPGIPEDSTAVIHSKKHPEPLNNDGGYTQTQGKTQVGSSKSSACQYKPAAETMDR
NGTGPMHRRQAPVRSPQLLFCPRTSKKPGLCAVGHAAAQARTTGHSAAQARTTGHSTAQA
YTTGHTLTQPCLYDRTLCGPGLYDRTHCSLGPYDRTL

>gi568815588r:123910152_124146212|GENSCAN_predicted_CDS_6|474_bp
atgcaagacagtgaagctcctgggatccctgaggattctactgcagtcattcacagtaag
aaacacccggaacccctcaacaatgatggtgggtacactcagacccagggcaaaacccag
gtgggctccagcaaatcatcagcttgccagtacaaacctgcggctgagacaatggacagg
aatggaactggccccatgcacaggaggcaggccccggtgcgcagcccccaactcctattt
tgtccccgcacatcaaagaagcctgggctgtgtgcagttggacacgctgcggcccaggcc
cgtacgaccggacactccgcggcccaggcccgtacaaccggacactccacggcccaggcc
tatacgaccggacacactttgacccagccctgcctgtacgaccggacactctgcggccca
ggcctgtacgaccggacacattgcagcctgggcccgtacgaccggacactctga

>gi568815588r:123910152_124146212|GENSCAN_predicted_peptide_7|347_aa
MGQAGDDHRRGSGQLTSMAQPSPLEPLGQKSFRVTGAKYLADKKREGTGELTAISMSELP
GVTKGNTAAQTTFVEGQTKKGPRPQELVPASSLAASFEDFPTLGADLQPPAAGNPAPAFL
LYTRRPSRAGRPRAQGGRERGHPDSDGEVKQLCPGPGRLRSLNTHTLARTPAHRLPGGVG
KWPGVGCPREPPGQPEGKKAAPVADSTDSGLKMPSVKEKTHEILADSLRGRLEHQAQPLR
KLRMRPGTSKGKAATVPESLQRHLDAKYAYVDCYAYVDCYAWTSSAKEPALHPGCWAHQH
GDDPTETMEVAEDDTEDDRHKTEEAGSSDHHLEAGWLLVHLHGLTHE

>gi568815588r:123910152_124146212|GENSCAN_predicted_CDS_7|1044_bp
atgggtcaggctggagatgaccacaggcgaggaagtggccagctgacctccatggcccaa
ccttctccgttagagcctttgggccagaagagcttccgtgtcacgggcgccaaatatttg
gctgacaagaaacgtgaaggtacaggtgaacttaccgccatcagcatgagtgagctgcca
ggggttacaaaagggaacacagctgcccagaccactttcgtggaagggcagacgaagaag
ggcccccgcccccaggagctggtcccagcctccagcctggcagcctccttcgaagacttc
cctacactgggcgcggacctccagccgccagcagccggcaacccagccccagccttcctc
ctctatacccgccgtcccagccgcgccggccggccccgggcgcagggcgggcgggaacgt
gggcacccggacagcgacggggaggtcaagcagctgtgcccaggacccgggcggctccga
agcctcaacacgcacacactcgcgcgcacgccggcccatcggttgcctggaggagtcggg
aagtggcctggagtcggctgccccagggaaccacctggacagcccgagggcaagaaagcg
gcaccagtggccgactccactgactctgggctgaagatgccatcagttaaagaaaagaca
catgaaattctggcagattcgctcagagggcgcttggagcaccaagcccagcctctcagg
aaactgaggatgagaccagggacctccaagggcaaagcagccacggtccctgagtcactg
caaagacacctggatgccaagtacgcatacgtggactgctatgcctacgtggactgctat
gcctggacctcctctgccaaggagcctgctcttcaccctggctgctgggctcaccagcat
ggagatgaccccactgagaccatggaggtagctgaagatgacactgaagatgacagacac
aagacagaggaggcagggtcatctgatcatcacctggaagctggctggctgctggtgcat
ttgcacggattgacacatgaatga

>gi568815588r:123910152_124146212|GENSCAN_predicted_peptide_8|241_aa
MCGDRAEGGGLSPTVGVGSLLLAVSKQDGQLVDRDAGAGPRDLGGGLDETHIPDSQVAAV
LGFSLGESMERRSERGSNDSFISLSLDPGLWWPYLSISLVSVAGNKDWPSKKFRSLQFSE
GTRGKLERSWKIWEKRITRRLNEVASAGGPGSVQPPRVCGVGKVAVPVATWSRGSGEGGR
PSACLVMGATGPIERMEGGFGSLLVYKPETETHSRSDLVRLEACTPLVGPTAPVVILSMM
S

>gi568815588r:123910152_124146212|GENSCAN_predicted_CDS_8|726_bp
atgtgtggggacagagctgagggcggtggcctgagccccactgtgggagtgggctccctg
ttactggctgtatccaagcaggatgggcagctggtagacagggatgctggggcagggcct
cgagacctgggtggaggcttggatgagacacacatccctgactcacaagttgctgctgtt
ttaggtttctcactgggtgagtctatggaaaggagatcagaaagaggaagtaacgactcc
ttcatctccctatccctcgaccccggcctctggtggccttacctgagcatatctctagtg
tcagtggctgggaataaagactggccgagcaagaagttcaggtccctgcagttttctgaa
ggcacaagaggcaagcttgagaggagctggaaaatatgggaaaagagaatcacaaggagg
ctcaacgaggtggccagtgccggagggccaggatctgtgcagcccccaagagtgtgtgga
gtggggaaggtggccgtcccagtggctacctggtcacgggggagtggggagggtggccgt
cccagtgcctgcctggtcatgggggccacggggcccatcgagaggatggaaggaggcttt
ggaagtctcctggtctacaagccagaaaccgagactcactcacgttctgatctggtgcgt
ctggaagcctgcacccccttggttgggccaactgcccctgttgtcatcctctcgatgatg
tcctga