GENSCAN 1.0	Date run:  3-Nov-116	Time: 07:15:36

Sequence gi568815588r:104214411_104416051 : 201641 bp : 43.24% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 PlyA -    424    419    6                               1.05
 1.05 Term -   1133    986  148  1  1   52   55    63 0.031  -3.23
 1.04 Intr -  11147  11051   97  0  1   55  111    33 0.064   1.37
 1.03 Intr -  16433  16180  254  1  2   56   61   214 0.350  12.58
 1.02 Intr -  18008  17900  109  0  1   34   86    98 0.634   3.54
 1.01 Init -  23656  23575   82  1  1   35  103    45 0.293   1.83
 1.00 Prom -  30280  30241   40                              -3.66

 2.00 Prom +  31477  31516   40                              -6.96
 2.01 Init +  31694  31916  223  1  1   76   33   185 0.712  10.78
 2.02 Intr +  40753  40861  109  2  1  107   80    93 0.989   9.74
 2.03 Intr +  45166  45388  223  1  1  106   76   287 0.969  27.43
 2.04 Intr +  48569  48667   99  1  0   77   76    50 0.803   3.01
 2.05 Intr +  52842  52921   80  2  2  141   38    15 0.077   0.15
 2.06 Intr +  54295  54634  340  1  1   54   67   235 0.014  13.48
 2.07 Intr +  60368  60539  172  1  1   52  113    33 0.303   1.72
 2.08 Intr +  60816  60924  109  1  1  110   94   113 0.849  13.44
 2.09 Intr +  63484  63706  223  1  1   67   71   207 0.959  15.03
 2.10 Intr +  64960  65061  102  0  0   68   72    69 0.455   3.67
 2.11 Intr +  76807  76933  127  0  1   43  105    53 0.441   2.75
 2.12 Intr +  77078  77259  182  0  2   54   36    97 0.195   0.69
 2.13 Intr +  83168  83274  107  1  2   92   46    88 0.948   4.01
 2.14 Term +  84718  84874  157  1  1  131   47   117 0.991   9.31
 2.15 PlyA +  84985  84990    6                               1.05

 3.07 PlyA -  88549  88544    6                               1.05
 3.06 Term - 101654  99998 1657  1  1  114   45  2741 0.016 261.31
 3.05 Intr - 105222 105124   99  2  0  104   87    31 0.001   3.83
 3.04 Intr - 117122 117049   74  2  2  135   36    26 0.047   0.30
 3.03 Intr - 123962 123836  127  1  1   31   97   128 0.447   8.68
 3.02 Intr - 131853 131805   49  1  1  100   80    58 0.244   3.94
 3.01 Init - 140478 140427   52  0  1   91   65    28 0.258   2.24
 3.00 Prom - 142286 142247   40                              -8.16

 4.00 Prom + 142393 142432   40                              -3.06
 4.01 Init + 142964 143002   39  1  0   59  109   -26 0.482  -3.21
 4.02 Intr + 143931 144212  282  2  0  105   86   295 0.964  28.62
 4.03 Intr + 147613 147761  149  0  2   62   58   139 0.938   7.33
 4.04 Intr + 150323 150479  157  2  1  111   46   110 0.999   9.11
 4.05 Intr + 151404 151598  195  2  0   67  113   357 0.997  35.71
 4.06 Intr + 154013 154150  138  1  0   85   31    98 0.875   4.46
 4.07 Intr + 156485 156644  160  1  1  102   82   108 0.996  11.16
 4.08 Term + 156854 156885   32  0  2   92   45    48 0.862  -1.08
 4.09 PlyA + 157358 157363    6                               1.05

 5.00 Prom + 159680 159719   40                              -2.16
 5.01 Init + 162445 162483   39  0  0   66  113     9 0.859   1.38
 5.02 Intr + 165619 165810  192  0  0   88  121   309 0.953  33.89
 5.03 Intr + 177823 177984  162  0  0  118   99    82 0.970  12.47
 5.04 Intr + 178919 179065  147  1  0   64   79   162 0.999  13.33
 5.05 Intr + 184950 185090  141  2  0   56   80    91 0.980   5.65
 5.06 Intr + 186270 186493  224  2  2  126   90   250 0.981  25.93
 5.07 Intr + 189842 189935   94  2  1   85   50    39 0.773  -0.23
 5.08 Intr + 192279 192383  105  2  0   87   69   180 0.778  16.41
 5.09 Intr + 196241 196293   53  1  2   86    2    61 0.066  -4.99
 5.10 Term + 199231 199486  256  1  1   92   45   233 0.291  14.46
 5.11 PlyA + 200236 200241    6                              -3.64


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  52842  52995  154  0  1  141   49   111 0.830   9.89
S.002 Sngl - 101641  99998 1644  1  0  107   45  2725 0.809 265.39
S.003 Intr + 107461 107598  138  1  0   67   69   121 0.900   7.68


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:104214411_104416051|GENSCAN_predicted_peptide_1|229_aa
MHTETIPNTAHSARVKERIIQRYLLKHEGSGPKRRANGRGAYGLRDTGVHSSGVAARSPA
AAERWVQGFPKQNVHFVNDNTICYPCGNYVIFINIETKKKTVLQCSNGIVGVMATNIPCE
VVAFSDRKLKPLIYVYSFPGLTRRTKLKGNILLDYTLLSFSYCGTYLASYSSLPEFELAL
CPGFQLSPSRDDGLCQVPDAKSQRIKGTRDSSKSVVDVLGRAFVIGNEG

>gi568815588r:104214411_104416051|GENSCAN_predicted_CDS_1|690_bp
atgcacacagagaccatccctaacactgcccattcagctcgtgttaaagaacgaattatt
caacggtacttgctaaagcacgaagggagcgggccaaagcgcagagccaatgggcgcggg
gcttacggtctccgggatacgggtgtacacagcagcggcgtcgcggcccgcagccccgcg
gcggcggaaagatgggtgcaaggattccctaagcagaatgttcattttgtcaacgacaac
accatttgctacccttgtgggaattatgtaatatttattaatattgaaaccaagaaaaag
actgtactgcagtgtagtaatggaattgtgggcgtcatggcaactaacatcccctgtgaa
gttgtggctttttctgaccggaagctaaaacctctcatctacgtatacagctttccagga
ttgaccagaaggaccaaattgaaaggcaacattctcctggactacactttactttcattc
agttactgtggcacctacctggctagttactcctctctcccagaatttgaactggccctt
tgcccaggctttcagttgtctccatccagggatgacggtctttgccaggtacctgatgca
aaaagtcaaaggatcaagggaaccagagattccagcaagagtgtggttgatgtgttgggc
agggcatttgtgatagggaatgaaggatga

>gi568815588r:104214411_104416051|GENSCAN_predicted_peptide_2|750_aa
MNPAGGTNDSRCAALRAVTLIVKVRSFTLEASETTNPPERTLNTSEHQKEQLPDTPPLRT
VTLTARVYGFILEVRSAPPGPVPEGSIRIYSMRFCPFAERTRLVLKAKGIRHEVININLK
NKPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMIL
ELFSKVPSLVGSFIRSQNKEDYAGLKEEFRKEFTKLEEVCRPHSKTETVDGSHEGRSHSL
SPAYYRLGWVAKSVFQMSPSTQVTQAVWGPHPEGDLEPTDFTKASCRKPSAATKAPAAGG
GPPLLPRAYRSRLALVLSSGFPLRCGAGCRGPTANHYRFLFRQPPAPAGPANPDLQEPSP
VVQKLNLGQGVRARAQLFLEPAAAVASHRAATVSSGSCANHLETMSGDATRTLGKGSQPP
GPVPEGLIRIYSMRFCPYSHRTRLVLKAKDIRHEVVNINLRNKPEWYYTKHPFGHIPVLE
TSQCQLIYESVIACEYLDDAYPGRKLFPYDPYERARQKMLLELFCKVPHLTKECLVALRC
GRECTNLKAALRQEFSNLEENDFHEEKLSSSSSKYSSPHWEPPHCFEIGGLGFLGNGVED
GEDFFILRLNVLGEPRPTRLALMATRGSPARFLLPLVFQGALQNADVLLRPSGGARGALA
EDEILEYQNTTFFGGTCISMIDYLLWPWFERLDVYGILDCVSHTPALRLWISAMKWDPTV
CALLMDKSIFQGFLNLYFQNNPNAFDFGLC

>gi568815588r:104214411_104416051|GENSCAN_predicted_CDS_2|2253_bp
atgaacccagcgggaggaacaaacgactccagatgtgcggccttaagagctgtaacactc
atcgtgaaggtccgcagcttcactcttgaagccagcgagacaacgaacccaccagaaaga
actctgaacacatcggaacatcagaaggaacaacttccagacacgccgcctttaagaact
gtaacactcaccgcaagggtctatggcttcattcttgaagtcagaagcgcgcccccgggg
ccggtcccggagggctcgatccgcatctacagcatgaggttctgcccgtttgctgagagg
acgcgtctagtcctgaaggccaagggaatcaggcatgaagtcatcaatatcaacctgaaa
aataagcctgagtggttctttaagaaaaatccctttggtctggtgccagttctggaaaac
agtcagggtcagctgatctacgagtctgccatcacctgtgagtacctggatgaagcatac
ccagggaagaagctgttgccggatgacccctatgagaaagcttgccagaagatgatctta
gagttgttttctaaggtgccatccttggtaggaagctttattagaagccaaaataaagaa
gactatgctggcctaaaagaagaatttcgtaaagaatttaccaagctagaggaggtgtgt
agaccacactccaaaactgaaactgtggatggcagccatgaaggaagatcccacagtctc
agccctgcttactacaggctggggtgggtagcgaagtctgtatttcaaatgagcccctca
acccaggtgacgcaggcggtgtggggaccgcatccggagggcgacctggagccgactgac
ttcacaaaggcctcctgccgcaaaccttcagcggccaccaaagccccggctgccggcggc
ggaccacctctgctgccgcgcgcctaccggagccgcttggccctagtgctttccagcgga
tttcccctcaggtgcggagccgggtgccggggtcccacagccaaccactaccggttcctc
tttcgtcagccaccggcgccggcaggacccgcgaatcccgatctccaggagcctagccca
gtagttcaaaaattaaatttggggcaaggggtgcgcgccagagcgcagctgtttctggag
cctgcggcagcggtggcgagccacagggcggcgaccgtgagctccgggagctgcgcaaac
cacctggagaccatgtctggggatgcgaccaggaccctggggaaaggaagccagccccca
gggccagtcccggaggggctgatccgcatctacagcatgaggttctgcccctattctcac
aggacccgcctcgtcctcaaggccaaagacatcagacatgaagtggtcaacattaacctg
agaaacaagcctgaatggtactatacaaagcacccttttggccacattcctgtcctggag
accagccaatgtcaactgatctatgaatctgttattgcttgtgagtacctggatgatgct
tatccaggaaggaagctgtttccatatgacccttatgaacgagctcgccaaaagatgtta
ttggagctattttgtaaggtcccacatttgaccaaggagtgcctggtagcgttgagatgt
gggagagaatgcactaatctgaaggcagccctgcgtcaggaattcagcaacctggaagag
aacgattttcatgaggaaaaactttcttcctcctccagcaagtacagcagcccccactgg
gagccaccacactgtttcgagattgggggcttgggatttcttggcaatggtgtagaggat
ggtgaagatttcttcatcctccggttgaacgttcttggggagccgcggccgacgcgcctc
gcactgatggccaccagggggagccccgcgcgcttcctccttccccttgtgttccagggc
gcacttcaaaacgctgacgttctccttcgtccctctgggggcgcccgaggggccctcgca
gaagatgagattcttgagtatcagaacaccaccttctttggtggaacctgtatatccatg
attgattacctcctctggccctggtttgagcggctggatgtgtatgggatactggactgt
gtgagccacacgccagccctgcggctctggatatcagccatgaagtgggaccccacagtc
tgtgctcttctcatggataagagcattttccagggcttcttgaatctctattttcagaac
aaccctaatgcctttgactttgggctgtgctga

>gi568815588r:104214411_104416051|GENSCAN_predicted_peptide_3|685_aa
MVLKDDGAWAGFMGVKTGVRVMGGRSLMNGLVQSAGPQAPPQPPASSGASALDLRAKPVL
EPSSRGGDRDRGPKPIVISLKLMQESPQLSPPPPVSKQQGRVLQTEPACAEFNREPNDSW
DPIRGSGEMDYVRKKAPTMAMGLFRVCLVVVTAIINHPLLFPRENATVPENEEEIIRKMQ
AHQEKLQLEQLRLEEEVARLAAEKEALEQVAEEGRQQNETRVAWDLWSTLCMILFLMIEV
WRQDHQEGPSPECLGGEEDELPGLGGAPLQGLTLPNKATLGHFYERCIRGATADAARTRE
FLEGFVDDLLEALRSLCNRDTDMEVEDFIGVDSMYENWQVDRPLLCHLFVPFTPPEPYRF
HPELWCSGRSVPLDRQGYGQIKVVRADGDTLSCICGKTKLGEDMLCLLHGRNSMAPPCGD
MENLLCATDSLYLDTMQVMKWFQTALTRAWKGIAHKYEFDLAFGQLDSPGSLKIKFRSGK
FMPFNLIPVIQCDDSDLYFVSHLPREPSEGTPASSTDWLLSFAVYERHFLRTTLKALPEG
ACHLSCLQIASFLLSKQSRLTGPSGLSSYHLKTALLHLLLLRQAADWKAGQLDARLHELL
CFLEKSLLQKKLHHFFIGNRKVPEAMGLPEAVLRAEPLNLFRPFVLQRSLYRKTLDSFYE
MLKNAPALISEYSLHVPSDQPTPKS

>gi568815588r:104214411_104416051|GENSCAN_predicted_CDS_3|2058_bp
atggtgctgaaagatgatggggcttgggctggcttcatgggagtgaaaactggtgttcgg
gtcatggggggtagatccctcatgaatggcttggtgcagagtgccgggccgcaagctcca
ccgcagccgcctgcaagcagcggcgcctcggccctcgacctgcgcgcaaagcctgtgctg
gagccgtcctcccgcggcggggaccgggaccggggacccaagccaatcgtcatttccctg
aagctgatgcaggagtccccccaactctcgccccctcctcctgtatcaaagcagcaggga
agggtgctgcagacagagccagcctgtgcagagtttaacagggagccaaatgacagctgg
gatccgatccggggaagcggggagatggattacgtgagaaagaaagctccaaccatggcc
atggggctcttccgcgtgtgtctggtggtggtgacggccatcatcaaccacccgctgctg
ttcccgcgggagaacgccacagtccccgagaacgaggaggagatcatccgcaagatgcag
gcgcaccaggagaagctgcagctggagcagttgcgcctggaggaggaggtggctcggctg
gcggccgaaaaggaggcactggagcaggtggcggaggagggcaggcagcagaacgagaca
cgcgtggcctgggacctctggagcaccctctgcatgatcctcttcctgatgatcgaggtg
tggcggcaggaccaccaggaggggccctcacctgagtgcctgggcggtgaggaggatgag
ctgcctgggctggggggcgcccccttgcagggcctcaccctgcccaacaaggccacgctt
ggccacttttatgagcgctgcatccggggggccacggccgatgcagcccgtacccgggag
ttcctggaaggcttcgtggatgacttgctggaagccctgaggagcctctgcaaccgggac
accgacatggaggtggaggacttcattggcgtggacagcatgtacgagaactggcaggtg
gacaggccactgctgtgccaccttttcgtgcccttcacaccccccgagccctaccgcttc
cacccagagctctggtgctccggccgctcagtgcccctggatcgccagggctacggccag
atcaaggtggtccgcgccgatggggacacattgagctgcatctgcggcaagaccaagctc
ggggaagacatgctgtgtctcctgcacggcaggaacagcatggcgcctccctgcggcgac
atggagaacctgctgtgtgccacagattccctgtacctggacacgatgcaggtcatgaag
tggttccagacggccctcaccagagcctggaagggcatcgcccacaagtacgagttcgac
ctggcctttggccagctggacagcccggggtccctgaagatcaagttccgttcagggaag
ttcatgcccttcaacctgattcctgtgatccagtgtgatgactcggacctgtactttgtc
tcccaccttcccagggagccctctgagggcaccccagcctccagcacagactggctcctg
tcctttgctgtctatgagcgacacttcctcaggacgacactaaaggcactgcccgagggc
gcctgccacctcagctgcctgcagatagcatccttcctgctctccaagcagagccgcctg
accggtcccagcgggctcagcagctaccacctgaagacggccctactgcacctcctactc
ctccggcaggccgccgactggaaggcggggcagctggacgctcgtctgcacgagttgctg
tgcttcctggagaagagcttgctccagaagaagctccaccacttcttcatcggcaaccgc
aaggtgcctgaggccatgggactccctgaggccgtgctcagggccgagcccctcaacctc
ttccggcccttcgtcctgcagcgaagcctttaccgtaagacactggactccttctatgag
atgctcaagaatgccccagcgctcattagcgagtattccctacatgtcccctcagaccag
cctaccccaaaaagctga

>gi568815588r:104214411_104416051|GENSCAN_predicted_peptide_4|383_aa
MMESLLGDKCIFQEKGGKQVLEESAFEEMERDFQGVLHELSGDKSLEKFRIEYERLHAVM
KKSYDNEKRLMAKCRELNAEIVVNSAKVATALKLSQDDQTTIASLKKEIEKAWKMVDSAY
DKEQKAKETILALKEEIVNLTKLVEQGSGLSMDQHSNIRDLLRFKEEVTKERDQLLSEVV
KLRESLAQTTEQQQETERSKEEAEHAISQFQQEIQQRQNEASREFRKKEKLEKELKQIQA
DMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQENEQ
HSLVCEQLSQENQQKALELKAKEEEVHQMRLDIGKLNKIREQIHKKLHHTEDQKAEVEQH
KETLKNQIVGLERGSIGKNDNPT

>gi568815588r:104214411_104416051|GENSCAN_predicted_CDS_4|1152_bp
atgatggaatctcttttgggagataagtgcatatttcaggaaaagggtggaaagcaagtc
ctggaagaatctgcatttgaagaaatggaaagagattttcagggagttctccatgaactt
tctggagacaaaagtttggaaaaatttcggattgaatatgagaggcttcatgctgtcatg
aaaaagtcttatgacaatgaaaagcgtctgatggccaaatgcagagagctaaatgcagag
attgtagtgaattctgcgaaggtcgccactgcccttaagctctctcaggatgatcagacc
accattgcatccctaaagaaggaaattgaaaaggcctggaagatggtggactcagcctat
gacaaagagcagaaggccaaggagacgattcttgctctgaaagaggaaatagtgaacctg
accaaactagtggagcaggggtctggactgtcaatggaccagcatagcaacatccgagat
ttactgaggttcaaagaagaagtgacaaaggagagagaccagctcttatcagaagtggta
aaattacgagaatccctagctcagaccactgaacagcagcaggaaacagagcgatcaaaa
gaggaggctgaacatgccatcagtcagttccaacaagaaatccagcaacgtcagaacgaa
gcttcccgggagttccggaagaaggaaaaactagagaaagagctcaagcagattcaggca
gacatggacagcaggcagacagaaataaaagccctgcagcagtatgtgcagaagagcaag
gaggagcttcagaagctggagcagcagctgaaggagcagaagatattgaatgagagagct
gcaaaggaactcgagcaatttcagatgagaaatgctaaacttcagcaagagaatgaacag
cacagtttggtctgtgagcagctatcccaggaaaaccaacagaaggcgttggagctcaaa
gccaaagaggaagaagtccatcaaatgcgccttgacatcgggaagctcaacaaaatcaga
gaacaaattcataagaaattgcaccacaccgaagatcaaaaggcagaagtcgaacagcac
aaagaaaccctaaaaaatcagattgtgggattagagagaggttccattggcaaaaatgac
aatccaacctga

>gi568815588r:104214411_104416051|GENSCAN_predicted_peptide_5|470_aa
MDELLRERDILNKNMLKAVNATQKQTDLVKLHEQAKRNLEGEIQNYKDEAQKQRKIIFHL
EKERDRYINQASDLTQKVLMNMEDIKVRETQIFDYRKKIAESEIKLKQQQNLYEAVRSDR
NLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALVKLHLEQQRIEKEKETLK
AELQKLRQQALETKHFIEKQEAEERKLLRIIAEADGERLRQKKELDQVISERDILGSQLV
RRNDELALLYEKIKIQQSVLNKGESQYNQRLEDMRILRLEIKKLRREKGILARSMANVEE
LRKYGFVNCPLFESIALAKPFLLESGDTAKVPLASDPNAYELIQKIHTLQKRLISKTEEV
VEKELLLQLDLLFAFDVSEFQHNAFGHLWDEAGLYALSNCYPLPGYHYIIIIIIIIIIII
IIKMAFLIMGIRHDSIGIIIIIKMAFLIMGIRHDSIGVGSSNLLLEAFKT

>gi568815588r:104214411_104416051|GENSCAN_predicted_CDS_5|1413_bp
atggacgagcttctaagagaaagggacatactaaataagaacatgcttaaggcggtcaat
gcgacccagaagcagacagacttggtaaagctccatgaacaagccaagaggaacctggag
ggagaaatccagaactacaaggatgaggctcagaagcagagaaagatcatctttcatctg
gaaaaggagcgtgaccggtacatcaaccaagccagtgaccttacgcaaaaggtccttatg
aacatggaagacataaaagttcgtgaaacacagatttttgactacaggaaaaaaatagct
gaatcagagattaaattaaaacagcaacagaacctatatgaagctgtgagatcagacaga
aatctgtatagcaaaaatctggttgaggctcaggatgaaataacagatatgaagagaaag
ttaaagattatgatccatcaggtagatgagctgaaagaagacatctctgccaaagagtcc
gcacttgtgaagctgcacctggaacagcagcgaatagaaaaggaaaaggaaacattgaag
gctgagctgcagaagctgagacaacaagccctggagacaaaacactttattgaaaagcaa
gaagctgaagagagaaaactcctgcgaataattgctgaggctgacggggagaggttgaga
cagaagaaggaattagaccaggtcatcagtgagagagatatcctggggtctcagcttgtt
cggcgcaatgatgagttagctttgctctatgagaagatcaagatccaacagtctgtgctg
aataaaggggagagccagtacaaccagaggttggaggacatgagaatcctcagacttgag
atcaagaagcttcgccgggaaaaggggattcttgccaggagtatggctaatgttgaagaa
ctcagaaaatacggttttgtgaactgccctctttttgaaagcattgcgttagccaagccc
tttctcttagaatctggggacacagctaaagtcccattggccagcgaccccaatgcatat
gagctgatacagaaaattcacaccctgcagaagcgtctcatcagcaagactgaagaggtg
gttgaaaaagagctgctcctccagttagatcttctctttgcctttgatgtttcagagttt
cagcacaacgcatttgggcatctgtgggatgaggcaggtctatatgccttgagtaactgc
tatccattacctgggtatcattacatcatcatcatcatcatcatcatcatcatcatcatc
atcatcaagatggcatttctaataatgggcataaggcatgatagcattggcatcatcatc
atcatcaagatggcatttctaataatgggcataaggcatgatagcattggagtaggaagc
tctaacctcttgctagaggcatttaaaacatga