GENSCAN 1.0	Date run:  5-Nov-116	Time: 04:03:50

Sequence gi568815588f:87764470_88065469 : 301000 bp : 37.53% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 PlyA -    817    812    6                               1.05
 1.05 Term -   7604   7495  110  0  2  105   41    85 0.343   3.19
 1.04 Intr -  20201  20001  201  0  0   76   57   228 0.805  16.84
 1.03 Intr -  25961  25841  121  2  1   62   86    77 0.990   4.05
 1.02 Intr -  28286  28188   99  2  0   72   50    90 0.830   2.99
 1.01 Init -  50130  49969  162  0  0   62   80   184 0.884  14.78
 1.00 Prom -  50636  50597   40                              -7.35

 2.00 Prom +  51410  51449   40                              -4.25
 2.01 Sngl +  53191  53403  213  0  0   68   47   235 0.831  12.33
 2.02 PlyA +  55229  55234    6                               1.05

 3.00 Prom +  77424  77463   40                              -2.75
 3.01 Init +  79401  79628  228  2  0  100   70   364 0.537  34.22
 3.02 Term +  79667  79849  183  1  0   18   37   194 0.783   3.86
 3.03 PlyA +  80322  80327    6                               1.05

 4.00 Prom +  80884  80923   40                              -6.55
 4.01 Init +  80934  80964   31  2  1   40   92    36 0.240  -0.62
 4.02 Intr +  84702  84833  132  1  0  106   50   107 0.226   8.40
 4.03 Intr +  95179  95260   82  2  1   21  103    57 0.084  -1.72
 4.04 Intr +  98495  98644  150  2  0   22   91   132 0.335   5.26
 4.05 Term +  99280 100141  862  1  1   10   42   553 0.305  34.11
 4.06 PlyA + 100491 100496    6                               1.05

 5.02 PlyA - 101730 101725    6                               1.05
 5.01 Sngl - 135614 134673  942  2  0   42   47   411 0.979  28.67
 5.00 Prom - 137068 137029   40                              -6.15

 6.02 PlyA - 137164 137159    6                               1.05
 6.01 Sngl - 138490 137855  636  1  0   88   44   504 0.895  41.93
 6.00 Prom - 140034 139995   40                              -7.65

 7.00 Prom + 140649 140688   40                              -4.05
 7.01 Init + 150875 150997  123  1  0   56   76    80 0.059   2.59
 7.02 Intr + 168582 168782  201  2  0   34  115   155 0.253  11.36
 7.03 Intr + 181155 181455  301  2  1   10  110   299 0.300  19.68
 7.04 Intr + 193384 193550  167  2  2   45   76    76 0.777   0.86
 7.05 Intr + 196425 196649  225  2  0  125   86   116 0.978  12.36
 7.06 Term + 200818 201003  186  0  0  100   38   206 0.999  13.31
 7.07 PlyA + 201039 201044    6                               1.05

 8.00 Prom + 235522 235561   40                              -3.05
 8.01 Init + 235576 235819  244  0  1   74    6   180 0.048   6.34
 8.02 Intr + 255944 256081  138  0  0   58   95    47 0.332   1.91
 8.03 Intr + 256409 256574  166  0  1   98   76    29 0.381   0.80
 8.04 Intr + 256643 256715   73  2  1   76  116   -13 0.364  -1.21
 8.05 Term + 257717 257839  123  1  0   73   45   104 0.483   2.00
 8.06 PlyA + 259604 259609    6                               1.05

 9.00 Prom + 276232 276271   40                              -2.85
 9.01 Init + 277360 277522  163  0  1   83   94    64 0.516   6.44
 9.02 Term + 281909 282102  194  0  2   57   44   184 0.613   7.50
 9.03 PlyA + 282805 282810    6                               1.05

10.03 PlyA - 282986 282981    6                               1.05
10.02 Term - 287173 287082   92  2  2  109   38   115 0.291   5.50
10.01 Init - 300491 300374  118  2  1   38   55   112 0.160   3.31

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl + 235576 235836  261  0  0   74   42   182 0.847   7.11


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588f:87764470_88065469|GENSCAN_predicted_peptide_1|230_aa
MVHAEAFSRPLSRNEVVGLIFRLTIFGAVTYFTIKWMVDAIDPTRKQKVEAQKQAEKLMK
QIGVKNVKLSEYEMSIAAHLVDPLNMHVTWSDIAGLDDVITDLKDTVILPIKKKHLFENS
RLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSL
AIKLQPSIIFIDEIGGKLSQLIESNWALRLLNVIQCRVEVGYKIWIISEM

>gi568815588f:87764470_88065469|GENSCAN_predicted_CDS_1|693_bp
atggtacatgctgaagccttttctcgtcctttgagtcggaatgaagttgttggtttaatt
ttccgtttgacaatatttggtgcagtgacatactttactatcaaatggatggtagatgca
attgatccaaccagaaagcaaaaagtagaagctcagaaacaggcagaaaaactaatgaag
caaattggagtgaaaaatgtgaagctctcagaatatgaaatgagtattgctgctcatctt
gtagaccctcttaatatgcatgttacttggagtgatatagcaggtttagatgatgtcatt
acggatctgaaagacacagtcatcttacctatcaaaaagaaacatttgtttgagaattcc
aggcttctgcagcctccaaaaggtgttcttctctatgggcctccaggctgtggtaaaacg
ttgattgccaaggccacagccaaagaagcaggctgtcgatttattaaccttcagccttcg
acactgaccgataagtggtatggagaatctcagaaattggctgctgctgtcttctccctt
gccataaagctacaaccatccatcatctttatagatgaaataggtggcaaactctcacag
ttaattgaaagtaattgggctctgaggctcctgaatgtcattcagtgtagagtagaagta
ggatataagatttggattatttcagaaatgtaa

>gi568815588f:87764470_88065469|GENSCAN_predicted_peptide_2|70_aa
MKACQSSQRGQVIINITIFCESVPGPEEPPSILHKVVAAPVRQSDLVHSSRLRLGSPGSE
VFRDDLKPPQ

>gi568815588f:87764470_88065469|GENSCAN_predicted_CDS_2|213_bp
atgaaggcctgccaatcttcacaaagagggcaggttattattaacatcaccatcttttgt
gaaagcgtgcccggccctgaagaaccaccttcgattttgcacaaggtggtggccgcgcct
gtgcgacaatcagacctggttcattccagccgccttcgtctaggttcgcctggttctgaa
gtcttccgggacgacctcaaacccccacagtga

>gi568815588f:87764470_88065469|GENSCAN_predicted_peptide_3|136_aa
MGSHVAVFDDVIKVFSDMKVCKSSTLEKVKKRKKLLLFCLSEYKKYIILAEAKKILVSNV
DQTIDDPYATFVKMLTDSKKKDLVFIFWASESASIKSKMIYASSKDVIKKQLGVSTVVFL
EGKLCDPLQRPSWRIY

>gi568815588f:87764470_88065469|GENSCAN_predicted_CDS_3|411_bp
atgggctcccatgtggctgtctttgatgatgtcatcaaggtgttcagtgacatgaaagtg
tgcaagtcttcaacactagaaaaggtgaagaagcgcaagaagttgctgctcttctgcctg
agtgagtacaagaagtacatcatccttgcggaggccaagaagatcctggtaagtaatgtg
gaccaaaccattgatgatccctatgccacttttgtcaagatgctgacagacagcaagaag
aaggacctggtgtttatcttctgggcctctgagtctgcatccattaagagcaaaatgatc
tatgccagctccaaagacgtcatcaagaagcagctaggggtcagcactgtcgtcttcttg
gagggcaaactttgtgatcccctccagcgcccttcctggagaatctactag

>gi568815588f:87764470_88065469|GENSCAN_predicted_peptide_4|418_aa
MELAGLEVALGEVGKQWSYEWQQPMAWGCTLGASQDKDAMSRKEISEMTYGSEPFTLKLY
IIVPLLQASTSPYGILVLNPDSGAKGKSECSPRRGNLGVEARGEGIPLAGTVPAFPSTLS
SVVTWSFSPVHSACEQPRGQRPRGAGRPAAAAAAAFLASSSSFLTVQPLPRLLLKGKVEA
VGSGGSRLRRGGGGGTSRSWSGGEKRRRRRPRRLQLQGGGLSRLSPFPGLGTPESWSLPF
YCLQHGGGGGWHIQGPGPVLNLPCAAAAPPVARAPEAAGGGSRSEDYSSSPHSAAAAARP
LAAEEKQAQSLQPSSSRRSSHYPAAVQSQAAAERGASATAKSRAISILQKKPRHQQLLPS
LSSFFFSHRLPDMTAIIKEIVSRNKRRYQEDGFDLDLTCIHFCGCSSLPFCHSLRTWE

>gi568815588f:87764470_88065469|GENSCAN_predicted_CDS_4|1257_bp
atggagcttgcaggactggaagttgctctgggtgaggtaggaaaacagtggtcctatgag
tggcagcagccaatggcctggggctgcaccctgggagctagccaagacaaagatgccatg
tccagaaaagaaatttcagaaatgacttatggctcagagccattcaccctgaagctttat
ataattgtccctttgttacaagcttctacttctccctatggtattctggttctgaatcca
gacagcggtgcaaaaggaaagagcgaatgcagtccacgccgcggaaatctaggggtagag
gcaaggggggagggtattccccttgcagggaccgtccctgcatttccctctacactgagc
agcgtggtcacctggtccttttcacctgtgcacagcgcctgtgagcagccgcgggggcag
cgccctcggggagccggccggcctgcggcggcggcagcggcggcgtttctcgcctcctct
tcgtcttttctaaccgtgcagcctcttcctcggcttctcctgaaagggaaggtggaagcc
gtgggctcgggcgggagccggctgaggcgcggcggcggcggcggcacctcccgctcctgg
agcgggggggagaagcggcggcggcggcggccgcggcggctgcagctccagggagggggt
ctgagtcgcctgtcaccatttccagggctgggaacgccggagagttggtctctccccttc
tactgcctccaacacggcggcggcggcggctggcacatccagggacccgggccggtttta
aacctcccgtgcgccgccgccgcaccccccgtggcccgggctccggaggccgccggcgga
ggcagccgttcggaggattattcgtcttctccccattccgctgccgccgctgccaggcct
ctggctgctgaggagaagcaggcccagtcgctgcaaccatccagcagccgccgcagcagc
cattacccggctgcggtccagagccaagcggcggcagagcgaggggcatcagctaccgcc
aagtccagagccatttccatcctgcagaagaagccccgccaccagcagcttctgccatct
ctctcctcctttttcttcagccacaggctcccagacatgacagccatcatcaaagagatc
gttagcagaaacaaaaggagatatcaagaggatggattcgacttagacttgacctgtatc
catttctgcggctgctcctctttacctttctgtcactctcttagaacgtgggagtag

>gi568815588f:87764470_88065469|GENSCAN_predicted_peptide_5|313_aa
MIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYLKIIRAIYDKPTASIILNGQKLEAFPLK
TGTRQGRPLSPLLFNTVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLESPTVS
AQNLLQLISNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSELPLTTATKRIKYLGIQLT
RDVKDLFKNYKPLLNEIKDDTNKWKNIPCSWVGRINIVKMATLPKVIYRNNAIPIKLPIN
FFTELEKTTLKFIWSQKRARTAKTILSRKKKAGGITLPDFKLYYKATVTKTAWYWYQNRD
IDQWNRTEPSEIT

>gi568815588f:87764470_88065469|GENSCAN_predicted_CDS_5|942_bp
atgattatctcaatagatgcagaaaaggcctttgacaaaattcaacagcccttcatgcta
aaaactctcaataaattaggtattgatggaacgtatctcaaaataataagagctatttat
gacaaacccacagccagtatcatactgaatgggcaaaaactggaagcattccctttgaaa
actggcacaagacagggacgccctctctcaccactcctattcaacacagtgttggaagtt
ctggccagggcaatcaggcaagagaaagaaataaagggtattcaattaggaaaagaggaa
gtcaaattgtccctgtttgcagatgacatgattgtatatttagaaagccccactgtctca
gcccaaaatctccttcagctgataagcaacttcagcaaagtctcaggatacaaaatcaat
gtgcaaaaatcacaagcattcttatacaccaataacagacagacagagagccaaatcatg
agtgaactcccactcacaactgctacaaagagaataaaatacctaggaatccaacttaca
agggatgtgaaggacctgttcaagaactacaaaccactgctcaacgaaataaaagatgac
acaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatg
gccacactgcccaaggtaatttatagaaacaatgccatccccatcaagctaccaataaat
ttcttcacagaattggaaaaaactactttaaagttcatatggagccaaaaaagagcccgc
actgccaagacaatcctaagcagaaagaaaaaagctggaggcatcacactacctgacttc
aaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaacagagat
atagaccaatggaacagaacagagccctcagaaataacatga

>gi568815588f:87764470_88065469|GENSCAN_predicted_peptide_6|211_aa
MGRKQSRKAENSKTQSASSPPKDHSSSPAMEQSWMKNDFDELTEVGFRRSVVTNFSELKE
DVQTHRKEAKNLEKRLDKWLTRINSVQKTINDLMELKIMARELHDACTSFSSRFDQVEER
VSVIADQMNEMKQEEKFREKTVKRNEQSLQEIWDYVKRPNLRLIGVLDSDGENGTKLENT
LQDIIQENFPNIARHANIQIQGIQRPPQRYS

>gi568815588f:87764470_88065469|GENSCAN_predicted_CDS_6|636_bp
atggggagaaaacagagcagaaaagctgaaaattctaaaacccagagtgcctcttctcct
ccaaaggatcacagctcctcaccagcaatggaacaaagctggatgaagaatgactttgac
gagttgacagaagtaggcttcagaaggtcagtagtaacaaacttctccgagctaaaggag
gatgttcaaacccatcgcaaggaagctaaaaatcttgaaaaaagattagacaaatggcta
actagaataaacagtgtacagaagaccataaatgacctgatggagctgaaaatcatggct
cgagaactacatgacgcatgcacaagcttcagcagccgattcgatcaagtggaagaaagg
gtatcagtaattgcagatcaaatgaatgaaatgaagcaagaagagaagtttagagaaaaa
acagtaaaaagaaatgaacaaagcctccaagaaatatgggactatgtgaaaagaccaaat
ctacgtttgattggtgtacttgacagtgacggggagaatggaaccaagctggaaaacact
cttcaggatattatccaggagaacttccccaacatagcaaggcacgccaacattcaaatt
cagggaatacagagaccaccacaaagatactcctag

>gi568815588f:87764470_88065469|GENSCAN_predicted_peptide_7|400_aa
MKTDFLTLLMGASRASLLQVSGSVTCRRHQGFGPAWSECCPLELIKPFCEDLDQWLSEDD
NHVAAIHCKAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRDKKLTGQNQVFSKAR
YTVSAFGNRRNEKTVVCCTVRGAKADEILENDLKVQECELRKNNFSDTGNFGFGTQEHID
LGIRYDPSIDVYSLDFYVVLEKPGFIIADPQFVVCQLKVKIYSSNSGPTRREDKFMYFEF
PQPLPVCGDIKVEFFHKQNKMLKKDKMFHFWVNTFFIPGPEETSEKVENGSLCDQEIDSI
CSIERADNDKEYLVLTLTKNDLDKANKDKANRYFSPNFKVKLYFTKTVEEPSNPEASSST
SVTPDVSDNEPDHYRYSDTTDSDPENEPFDEDQHTQITKV

>gi568815588f:87764470_88065469|GENSCAN_predicted_CDS_7|1203_bp
atgaagacagattttctcaccctgcttatgggtgcttctcgtgctagccttttgcaagtg
tcgggaagtgtaacctgcaggaggcatcagggctttgggcctgcatggtctgagtgctgc
cctctagaacttatcaaacccttttgtgaagatcttgaccaatggctaagtgaagatgac
aatcatgttgcagcaattcactgtaaagctggaaagggacgaactggtgtaatgatatgt
gcatatttattacatcggggcaaatttttaaaggcacaagaggccctagatttctatggg
gaagtaaggaccagagacaaaaagcttacaggtcagaaccaggtgttttccaaagctaga
tatactgttagcgcctttggcaacagaagaaatgaaaagactgttgtctgctgcacagtt
cgaggggccaaggcagacgaaatcctggagaatgatctaaaggtgcaggagtgtgagtta
agaaaaaataacttctcagatactggaaactttggttttgggacccaggaacacattgat
ctgggtatcagatatgacccaagcattgatgtctacagcctggacttctatgtggtgctg
gaaaagccaggtttcatcattgcagatcctcagtttgtggtctgccagctaaaggtgaag
atatattcctccaattcaggacccacacgacgggaagacaagttcatgtactttgagttc
cctcagccgttacctgtgtgtggtgatatcaaagtagagttcttccacaaacagaacaag
atgctaaaaaaggacaaaatgtttcacttttgggtaaatacattcttcataccaggacca
gaggaaacctcagaaaaagtagaaaatggaagtctatgtgatcaagaaatcgatagcatt
tgcagtatagagcgtgcagataatgacaaggaatatctagtacttactttaacaaaaaat
gatcttgacaaagcaaataaagacaaagccaaccgatacttttctccaaattttaaggtg
aagctgtacttcacaaaaacagtagaggagccgtcaaatccagaggctagcagttcaact
tctgtaacaccagatgttagtgacaatgaacctgatcattatagatattctgacaccact
gactctgatccagagaatgaaccttttgatgaagatcagcatacacaaattacaaaagtc
tga

>gi568815588f:87764470_88065469|GENSCAN_predicted_peptide_8|247_aa
MGKDFKVKMSKAIAMKTKIDNRDLTKLKHFCTEKETIIRVNRQPTEWEKMCAVYPSDKGP
ITIIYKELKQIHTKKQTTPLKSRKNWNTERLSQLGITGEVGAGWILRDQVQVKVLREKRL
RKQRTVDGNLIELECEFLGAGWECPELEDLGFTGRAEISSHSYSRGMTIFHHLKKVLTNA
FKITLYMSDTHFSVHLLSKQKIKGEKKDNGTFRKVENAREGEGSEEEEEIGEENSFLNQF
KKLQRLN

>gi568815588f:87764470_88065469|GENSCAN_predicted_CDS_8|744_bp
atgggcaaagatttcaaggtgaaaatgtcaaaagcaattgcaatgaaaacaaaaattgac
aatcgggatctcactaaactgaagcacttctgcacagaaaaagaaaccatcatcagagtg
aacagacaacctacagaatgggagaaaatgtgtgcagtctatccatccgacaaaggtcca
ataaccataatctacaaggaacttaagcaaattcacactaaaaagcaaacaaccccctta
aaatcaaggaagaattggaacactgagagactaagccagttaggtatcacaggtgaagtt
ggggcaggctggatcttaagagaccaagtacaagttaaagttttgagggagaaaagactg
agaaagcagaggacagtggatggaaaccttatagaattggagtgtgaatttcttggtgca
ggatgggaatgcccagagcttgaggatttagggtttactggcagggctgagatctcttca
cactcctactcaagaggcatgactatcttccatcacctcaagaaggttttaactaatgct
ttcaagataactctttatatgagcgatactcacttctcagttcatttgctcagtaaacaa
aagatcaaaggggaaaaaaaggataatggtacttttaggaaagtggagaatgccagagaa
ggagaaggaagtgaggaggaggaagaaataggggaggagaactcattcttgaatcagttt
aagaagcttcaaagactcaattga

>gi568815588f:87764470_88065469|GENSCAN_predicted_peptide_9|118_aa
MATSSFVSLSEFQEEFGAFQGRTSSWRQGVGSDKRNSLTWNPEIGLGFLGRGCTASSPGW
ISSMLEKNMLRNTMMNSKDLPGERDFKRRWEGLLWWPYVAAAARVLMTAMMIVVVVGS

>gi568815588f:87764470_88065469|GENSCAN_predicted_CDS_9|357_bp
atggcgacaagctcgttcgtgtcgttgtctgagtttcaagaagagtttggtgcgtttcag
ggaagaacttcttcatggaggcaaggggttggaagtgataagagaaactctttaacttgg
aatcctgagataggacttgggtttctgggcagaggttgcacagcctcttcccctggttgg
atctcctctatgctggagaagaacatgttgagaaatactatgatgaacagtaaggatctg
cctggggaacgggatttcaagagacgatgggaaggcttgctctggtggccctatgttgct
gctgctgctagggtgctgatgacggccatgatgattgtggtggtggtgggtagttga

>gi568815588f:87764470_88065469|GENSCAN_predicted_peptide_10|69_aa
MSLIRSSPTFNQNHQPIDSGTEWLDHFARKPYAIGPKETNFYEKITFDVPKDAALKHAEE
YWYTSLTQL

>gi568815588f:87764470_88065469|GENSCAN_predicted_CDS_10|210_bp
atgtcactcatcaggtcctctcccacgtttaaccagaatcatcagcctatagattcggga
actgagtggcttgaccattttgcacgtaagccatatgcaattggtccaaaggagaccaat
ttttatgagaaaatcacttttgatgttccaaaggatgccgcattaaagcatgctgaggag
tattggtacacctccttgactcaactgtaa