GENSCAN 1.0	Date run:  8-Nov-116	Time: 04:25:02

Sequence gi568815588f:123036051_123237728 : 201678 bp : 44.36% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   4416   4622  207  2  0   97   87    85 0.991   8.57
 1.02 Intr +   5159   5329  171  1  0   71   87    81 0.828   6.44
 1.03 Intr +   6996   7121  126  2  0   83   98     4 0.771   1.78
 1.04 Intr +   7408   7572  165  0  0   11   45   126 0.585   0.76
 1.05 Intr +   8343   8435   93  2  0   54  111    38 0.808   2.86
 1.06 Intr +  11159  11248   90  1  0   87   91     3 0.546   0.69
 1.07 Intr +  14999  15136  138  1  0   74   83    29 0.687   1.66
 1.08 Intr +  17011  17110  100  0  1   54   27   104 0.617   0.58
 1.09 Term +  17645  17715   71  0  2   90   45    98 0.838   3.80
 1.10 PlyA +  17804  17809    6                               1.05

 2.08 PlyA -  18502  18497    6                               1.05
 2.07 Term -  19121  19099   23  0  2  105   48    16 0.330  -2.23
 2.06 Intr -  26975  26792  184  2  1   32   36   157 0.041   4.26
 2.05 Intr -  37425  37192  234  0  0  -30   72   235 0.058   7.99
 2.04 Intr -  49614  49483  132  0  0   -3   89   178 0.958   9.64
 2.03 Intr -  53004  52852  153  0  0   53  119    52 0.803   5.07
 2.02 Intr -  62926  62846   81  1  0   69   75    81 0.402   4.73
 2.01 Init -  64809  64684  126  0  0   91   42    33 0.296  -0.81
 2.00 Prom -  71016  70977   40                              -1.56

 3.03 PlyA -  71191  71186    6                               1.05
 3.02 Term -  76008  75860  149  1  2   54   38   117 0.539   1.36
 3.01 Init -  82213  82033  181  1  1   83    0   238 0.349  11.85
 3.00 Prom -  87404  87365   40                              -4.26

 4.00 Prom +  91523  91562   40                              -5.86
 4.01 Init +  98383  98965  583  0  1   54   64   310 0.839  20.55
 4.02 Intr +  99900 100400  501  1  0   54   81   484 0.020  37.25
 4.03 Term + 101008 101681  674  2  2   83   54  1200 0.986 110.02
 4.04 PlyA + 104604 104609    6                               1.05

 5.00 Prom + 104682 104721   40                              -5.46
 5.01 Init + 111899 112011  113  1  2   44   58   141 0.121   4.43
 5.02 Intr + 112328 112596  269  2  2   47   82   242 0.139  16.68
 5.03 Term + 113520 114073  554  1  2  116   47   879 0.999  81.08
 5.04 PlyA + 114603 114608    6                               1.05

 6.00 Prom + 115857 115896   40                              -7.16
 6.01 Init + 118697 119066  370  1  1   75   17   498 0.782  36.56
 6.02 Intr + 121679 121830  152  0  2  106  102    29 0.970   5.98
 6.03 Intr + 124357 124515  159  0  0   29   72   160 0.990   8.68
 6.04 Intr + 126186 126363  178  2  1  101  103   103 0.999  12.59
 6.05 Term + 126562 126782  221  2  2   70   48   174 0.540   8.80
 6.06 PlyA + 127821 127826    6                               1.05

 7.03 PlyA - 127857 127852    6                               1.05
 7.02 Term - 135825 135482  344  1  2   32   49   308 0.603  15.97
 7.01 Init - 167528 167411  118  2  1   54   64   103 0.723   4.89
 7.00 Prom - 172803 172764   40                              -1.26

 8.03 PlyA - 174428 174423    6                               1.05
 8.02 Term - 186402 186272  131  1  2   56   48    62 0.162  -2.66
 8.01 Init - 190111 189982  130  1  1   44   57   154 0.621   8.21

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  24252  24316   65  2  2   37  116    60 0.820   4.32
S.002 Intr -  91208  91080  129  2  0   64  103    83 0.861   8.29
S.003 Term +  99247  99404  158  2  2  112   44    45 0.891   0.60
S.004 Init + 100001 100400  400  1  1  104   81   557 0.967  51.43
S.005 Init + 112329 112596  268  2  1   83   82   233 0.855  19.50


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588f:123036051_123237728|GENSCAN_predicted_peptide_1|386_aa
LMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKAT
YLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMA
NVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKLETCEPNGAAEK
EVWCQCTKGHKMGVLLSESGNSQAIKREQQKIQIVSADAGELPVPEANILGQIGHGYKYA
IGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAA
RLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRD
AKIGTIYEGASNIQLNTIAKHIDAEY

>gi568815588f:123036051_123237728|GENSCAN_predicted_CDS_1|1161_bp
ttgatgggtattgaagttgacccagaatatggaggcacaggagcttcatttttatccact
gtgctcgtgatagaggaattagccaaagttgatgcatctgtggctgtcttttgtgagatc
cagaacacattaattaacacactgattagaaaacatggaacagaagaacaaaaggccacc
tatttgcctcagctcactacagaaaaagtaggaagtttctgcctttcagaggctggagca
ggtagtgactcatttgctttgaagaccagagctgataaagagggagattattatgtcctc
aatggatcaaagatgtggatcagcagtgctgagcacgcagggctctttctggtgatggca
aatgtagaccctaccattggatataagggaattacctccttcttagtagatcgtgatact
ccgggccttcatatagggaaacctgaaaacaaattggggctcagagcttcttccacctgc
ccgttaacattcgaaaatgtcaagcttgagacttgtgaaccaaatggggccgcagagaag
gaagtctggtgtcagtgcactaaaggccacaagatgggggtgttgctcagtgagagcgga
aacagccaggctattaaacgtgagcagcagaagatccagatagttagtgctgatgctgga
gaactccctgttccagaagccaatatcttgggacaaattggacatggctataagtatgcc
atagggagtctcaatgaaggtagaataggaattgctgcacagatgctgggactggcgcaa
ggatgttttgactacactattccatatattaaagaaaggatacaatttggcaaaagacta
tttgattttcagggcctccaacaccaagtggctcacgtggccacccagctggaagctgca
agattactaacatacaatgctgctaggcttttagaagctggaaagccattcataaaagaa
gcgtcaatggccaaatactatgcatcagagattgcaggacaaacaacgagtaaatgtatc
gagtggatggggggagtaggctacaccaaagattaccctgtggagaaatacttccgagat
gcaaagattggtacgatatatgaaggagcttccaacatccagttgaacaccattgcaaag
catatcgatgcagaatactga

>gi568815588f:123036051_123237728|GENSCAN_predicted_peptide_2|310_aa
MTCRRMSGEGSFSLEGLSQNYSQKALETYSQDMPQRSSLSRQSGNDLSILHRHSLAEPRE
THEDVKDSKHQGFSRWALVIFQQQHFPRVAPQSVQQDDGLCPLIVPEGPRPVSWHLKGAL
TGLGAVKKSEDDIIEGDLAVSEIKEEGGCEPDEDPKRMCCQEAQVRQANSLSPPQTVHGT
SRGQGSFLNPLLFVESTCSLGLRHRCGLHGPTEDVPESLDVAVTGECIYSGVFGALPFMD
SKITKHDNEDGGMSRADSVDDQEGGRADNMDTLDKGMIHVLIGTEQNCARFHHATQNDVQ
FKTCMSLSAA

>gi568815588f:123036051_123237728|GENSCAN_predicted_CDS_2|933_bp
atgacctgcaggagaatgagtggagagggctctttctctctcgaggggctttcacagaac
tactcccagaaggccctggagacctactctcaggacatgcctcagcggtcaagtctttcc
agacagagtggcaatgatcttagcatccttcaccggcacagccttgccgagcccagggag
acgcatgaagacgtgaaggactccaagcatcaaggcttctctcggtgggccctggtcata
ttccaacagcagcatttccccagagtggctccccagagtgttcaacaggacgatggcctg
tgtcccctcattgttccagaaggccccaggcccgtctcatggcatctgaagggggctctg
actgggttaggagcagtgaagaagagtgaggatgatatcatagagggtgacttggcagtt
agtgagatcaaggaggagggtggctgcgagccagatgaggaccccaagaggatgtgctgc
caggaagcacaggtaagacaagcaaacagcctgagtcccccacaaacagtgcatggaacc
agcagaggccagggctccttcctcaaccccttgctcttcgtggagtccacctgctccctg
ggcctcagacacagatgtggcctgcatgggcccacggaggacgttccagagtccctcgat
gtggccgtcacaggggagtgcatctactcaggagtgtttggggcattacccttcatggat
tcaaagatcaccaagcatgacaatgaagatggcgggatgtcaagagcagacagtgttgat
gaccaagaagggggtagagcagacaacatggatacgctggacaaagggatgattcacgtt
cttattgggacggagcagaattgtgcaagatttcatcatgctactcagaacgacgtgcaa
tttaaaacttgtatgtctttatcagcagcgtga

>gi568815588f:123036051_123237728|GENSCAN_predicted_peptide_3|109_aa
MVSAVQLGACLPARAGGRLAAVLLPVQALGGGSGGEAVTDFECPDPSNTPFGACFRCSRI
ARIVKLFDFSQPGTSGGVESASGKSAIGFLFREAKIHATQHNLSIFISI

>gi568815588f:123036051_123237728|GENSCAN_predicted_CDS_3|330_bp
atggtttcggccgtccagcttggggcctgcctgccagctcgggcgggtggccgacttgct
gcagtgctgctcccagtccaggcactgggtggcggctctggtggtgaagcagtcactgac
ttcgaatgtcccgatccatccaacactccgtttggggcgtgcttccggtgttcccgcata
gctaggattgtcaagctctttgattttagccaaccaggtacaagtggaggtgttgaaagc
gcctctggaaagtctgctataggatttctgttccgtgaagccaaaattcatgctacccag
cacaaccttagtatcttcatctctatttaa

>gi568815588f:123036051_123237728|GENSCAN_predicted_peptide_4|585_aa
MSLKCLPHGLLVRTGELFLKPVEWNVLSLSRSAKVQCGSLRTSLPSRRAADAAACRGGGS
YAAAPSVHLAPIKALVRQLQTPAGRRDFLGESAVVGVTDSELIREPWAPAARAEGCPSES
SRRCREAVAPAAPPSDARVLAGSARIRTQAHPLLVPGEGSLFGFPGLKAKATRISESEDA
VRGLTPGFPYYRLDVEFRLWSDFRPLACSPRRPPVPLPPSRGPGGEGTMPEPGPDAAGTA
SAQPQPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPASAAAAAAAAAAAA
AKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPYTLTPAGGHLPRP
EASEKALLRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEESDSEESKKEGEAA
PGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYL
SSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHE
NSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYSHPVVSSVPLLRPV

>gi568815588f:123036051_123237728|GENSCAN_predicted_CDS_4|1758_bp
atgagtcttaaatgtctgcctcatgggcttctcgtgcgaaccggggagctgtttttaaag
ccagtggagtggaatgtcctttcactaagccgttctgcaaaggtccagtgtggttctcta
aggacttcgctgccgtcgagacgcgcagcggatgccgctgcttgccgcggcggaggaagc
tacgccgctgcgccttcggttcaccttgcccccattaaagcgttagttagacagctccaa
acgccagctggccggagagacttcctgggagaaagtgctgtcgtcggggtcacagactcg
gagttgatccgcgagccttgggcaccggcggccagagcagaggggtgcccttccgagagc
agccgtcggtgccgagaagctgttgccccagcagccccaccgagtgacgcgcgggttttg
gccgggtcagcgcgcatacgcacacaggcacacccactcctggtcccgggggaaggctca
ctcttcggttttccagggctaaaggccaaggccacgcggatttctgagtccgaagacgca
gtgcgaggacttacacctggattcccttactatcggctggatgttgagttccgtttatgg
tctgatttccggcctctcgcctgctcgccccgccgcccgcctgtcccgctccctccctcc
cggggacccggaggagaggggaccatgccggaacccgggccggacgctgccggcaccgcc
agcgcacagccccaaccgccgccgccccccccacccgctcccaaggagtccccgttctcc
atcaagaacctgctcaacggagaccaccaccggccgccccctaagcctcagccgccccca
cggacgctcttcgcgccagcctcggctgccgccgccgccgccgctgccgctgccgcggcg
gccaagggggccctggagggcgccgcgggcttcgcgctctcgcaggtgggcgacctggct
ttccctcgctttgagatcccggcgcagaggtttgccctgcccgcgcactacctggagcgc
tccccagcctggtggtacccctacaccctgacccccgccggcggccacctcccgcgacct
gaagcctcggagaaggccttgctgagagactcctcccccgcctccggcacagaccgcgac
tctccggagccactgctcaaggccgaccccgatcacaaggagctggactccaagagcccg
gacgagatcattctggaggagagcgactccgaggaaagcaaaaaggaaggcgaagcggcg
ccaggcgcggccggggcgagcgtaggggcggcggcggccactccgggcgcagaagactgg
aagaagggcgctgaaagtccagagaagaagccggcgtgccgcaagaagaagacgcgcaca
gtcttctcgcgcagccaggtcttccagctcgagtccaccttcgacatgaagcgctatctg
agcagctcggagcgagccggcctggccgcgtccctgcacctcaccgagacgcaggtcaag
atctggttccagaaccgccgcaacaagtggaagcggcagctggcggcggagctggaggcg
gccaacctgagccatgccgcggcgcagcgcatcgtgcgggtgcccatcctctaccacgag
aactcggcggccgagggcgcggcggctgcagccgcgggggccccggtgccagtcagccag
ccgctgctcaccttcccgcaccccgtctactactcgcacccggtggtctcttccgtgccg
ctgctacggccggtctga

>gi568815588f:123036051_123237728|GENSCAN_predicted_peptide_5|311_aa
MPARPSARSGGAPVLCAWPERFEIFRGRSAALRLAAFGMGSKEDAGKGCPAAGGVSSFTI
QSILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGWKAPACFCPDQHGPKEQGPKHHP
PIPFPCLGTPKGSGGSGPGGLERTPFLSPSHSDFKEEKERLLPAGSPSPGSERPRDGGAE
RQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRN
KWKRQLSAELEAANMAHASAQTLVSMPLVFRDSSLLRVPVPRSLAFPAPLYYPGSNLSAL
PLYNLYNKLDY

>gi568815588f:123036051_123237728|GENSCAN_predicted_CDS_5|936_bp
atgcccgccaggccctcggcgcgctctgggggcgcaccggtgctgtgtgcctggccggag
cgttttgaaattttccggggccgctcggcggcgctgcgattggccgcgttcgggatgggc
agcaaagaagatgcgggcaaggggtgtccggcggccggtggcgtctccagcttcaccatc
cagtccatcctgggcgggggcccctcggaggcaccgcgggagcccgtcggctggccagcc
aggaagcgcagcctgtccgtgtcctcggaggaggaggagccggacgacggctggaaggcg
cccgcctgcttctgcccagaccagcacggccctaaggagcagggccccaagcaccatccc
cccatcccttttccttgcctgggtacccccaagggcagcggaggctcgggcccgggcggc
ttggagcgcacgcctttcctctctccttcgcactcggactttaaagaagagaaagagagg
ctcctgcccgcgggctcgccctcgccggggtccgagcggccgcgggacggcggcgctgag
cggcaggccggcgcggccaagaagaagacgcgcaccgtcttttcgcgcagccaggtgtac
cagctcgagtccaccttcgacatgaagcgctacctgagcagctcggagcgcgcctgcctc
gcctccagcctgcagctcacggagacccaggtaaagacttggttccagaaccgccgcaac
aagtggaagcggcagctctcggctgagctggaggcggccaacatggcgcacgcgtcggcg
cagactctggtgagcatgccgctggtgttccgggacagttcgctgctgcgcgtgccggtg
ccgcgctcgctcgcctttcccgcgccgctctactacccgggaagcaacctctcggcctta
cctctctacaacctatacaacaagctcgactactga

>gi568815588f:123036051_123237728|GENSCAN_predicted_peptide_6|359_aa
MGRVRTLAGECSAQAQAQSLLAVVLSAPPSGGTPSARLSVRSPSPRDPWGLWAPVLQMTG
SNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCA
FYVENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSV
SGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAV
EYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFN
KKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAETKPK

>gi568815588f:123036051_123237728|GENSCAN_predicted_CDS_6|1080_bp
atggggcgagtccggaccttggcgggcgagtgctcggcgcaggcgcaagcgcagagtctc
ctcgcggtcgtcctctcggcccctccctctggggggacccccagtgccaggctgtcagtg
cgcagccccagcccgcgggacccctggggactctgggcgcctgttctgcagatgaccggt
tctaacgagttcaagctgaaccagccacccgaggatggcatctcctccgtgaagttcagc
cccaacacctcccagttcctgcttgtctcctcctgggacacgtccgtgcgtctctacgat
gtgccggccaactccatgcggctcaagtaccagcacaccggcgccgtcctggactgcgcc
ttctacgtagaaaatcttgttgggacccatgatgcccctatcagatgtgttgaatactgt
ccagaagtgaatgtgatggtcactggaagttgggatcagacagttaaactgtgggatccc
agaactccttgtaatgctgggaccttctctcagcctgaaaaggtatataccctctcagtg
tctggagaccggctgattgtgggaacagcaggccgcagagtgttggtgtgggacttacgg
aacatgggttacgtgcagcagcgcagggagtccagcctgaaataccagactcgctgcata
cgagcgtttccaaacaagcagggttatgtattaagctctattgaaggccgagtggcagtt
gagtatttggacccaagccctgaggtacagaagaagaagtatgccttcaaatgtcacaga
ctaaaagaaaataatattgagcagatttacccagtcaatgccatttcttttcacaatatc
cacaatacatttgccacaggtggttctgatggctttgtaaatatttgggatccatttaac
aaaaagcgactgtgccaattccatcggtaccccacgagcatcgcatcacttgccttcagt
aatgatgggactacgcttgcaatagcgtcatcatatatgtatgaaatggatgacacagaa
catcctgaagatggtatcttcattcgccaagtgacagatgcagaaacaaaacccaagtga

>gi568815588f:123036051_123237728|GENSCAN_predicted_peptide_7|153_aa
MIPDSKTDSGPWMLGYLLPRALLICHSLGLQFVLSFRNGNDKRRNNGRAKKGHGHVQPIC
CTNCAQCVPKDKAIKKFVIRNIVEAAAVRDISEAGIFDAYVLPKLYVKLHYCVSCAIHNK
VVRNQSCEARKDRTPPPRFRPAGAAPPPLPKPI

>gi568815588f:123036051_123237728|GENSCAN_predicted_CDS_7|462_bp
atgatacctgattccaagaccgactctggtccctggatgctgggctacctccttcctagg
gccctgctgatctgccactcactgggcttgcagtttgtgctgtccttccgtaatgggaat
gacaaaagaaggaacaacggtcgtgccaaaaagggccatggccacgtgcagcctatttgc
tgcactaactgtgcccaatgcgtgcccaaggacaaggccattaagaaattcgtcattcga
aacatagtggaggccgcagcagtcagggacatttctgaagcgggcatcttcgatgcctat
gtgcttcccaagctgtatgtgaagctacattactgtgtgagttgtgcaattcacaacaaa
gtagtcaggaatcaatcttgtgaagcccgcaaggaccgaacacccccaccccgatttaga
cctgcgggtgctgccccacctcccctaccaaagcccatataa

>gi568815588f:123036051_123237728|GENSCAN_predicted_peptide_8|86_aa
MWEALELPSDLKGFDQNADNDTDNEIQAEVVSDGDEELVNWSKAELQTVSEKDIVAVPAP
MDIKWNRDKPIPLCSVQILNSLNHKK

>gi568815588f:123036051_123237728|GENSCAN_predicted_CDS_8|261_bp
atgtgggaagctttggaacttcctagtgacttaaaaggctttgaccaaaatgctgataat
gatacggacaatgaaatccaggctgaggtggtctcagatggagatgaggaacttgtgaac
tggagtaaagctgagctacagacagtgagtgaaaaagacattgtggctgttccagccccc
atggacatcaagtggaacagagacaaaccaatcccactatgctctgtgcaaattcttaac
tcactgaatcataagaaatga